Bean golden yellow mosaic virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002867405.1 
Release date 2015/2/12
Submitter Morinaga,T., Ikegami,M., Shimotohno,K., Miura,K.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038790
GTGATGGCAGTTTTGTAATAAGAAGGTGTCTCCATTCGAGTTCTTGAGTGTCTCCATTTGATCCCCCTCAAAACTCGCTCATGCAATTGGAGACTGGAGTACAATATATACTAGAACCCTCAATCTCGTGAATTACGAGATTCACACACGTGGCGGCCATCCGATATAATATTACCGGATGGCCGCGCGCTCCCTCTTATATCCGTACGCCGCATTTCGATACCAGAAATGCCCTTCCCACGCTTTATACACGGTATTCTATACCGTTGGATAAAGCCTATCGCACTCTATCTTTTGAATTTTGAATTATTGGCTTTGCCCTTGTGTCTAGTTATTTATGGATATGTCTGACACATCTCTGATATTGTACGACTCGACCAATCAAAATTCAAAATAGAAGTTTAGTTAAATCGTGTGTTAATATGTGATTCATATAAATAAGCATGTTTGATAAAGAAAAAACGTACCGTTTTTAATGACTATGATTTTATGTTAGCCACACGATTTAATTATGTATACGTCTAAGTATAAACGTGGTTCGTCTAACTATCAACGACGAGGTTATTCACGTAGCCAAGGTTTTCGACGAACGTCAATTGTTAAACGACATGATGGTAAGCGTCGACAACATCAATCCAGTAAGTCTAATGAAGATCCTAAATTGTTGGTGCAATGTATACGTGAAAATCAATTTGGTCCTGATTTTGTTATGGCTCATAATACTGCCATATCCACGTTTATTAATTATCCCCAATTGGGTAAGATCGAACCTAATCGATGTAGGTCGTATATGAAGTTGAAACGCTTGCGTTTCAAAGGGACGGTTAAAATTGAACGTGTACACTCTGATGTGAACATGGATGGATTATCTCCTAAGATTGAAGGCGTATTTAGTATTGTTATTGTGGTTGATCGGAAACCACATTTAAATCCCAGTGGATGTCTTCATACATTTGATGAACTATTTGGAGCAAGGATTCATAGCCATGGGAATCTTGCTGTGATGCCTTCTTTGAAAGACCGATTTTACATACGACACGTGTTGAAGCGTGTTTTATCGGTAGATAAAGACACGACTATGATAGACGTTGAGGGTTCCACTTTGTTGTCTAATAAGCGTTATAATATGTGGTCTACGTTTAATGATTTTGATCATGACTCATGTAATGGTGCATATGCTAATATTGCTAAGAACGCTTTATTAGTGTATTATTGTTGGATGTCGGATATTATGTCTAAGGCATCGACATTTGTGTCATTTGATCTTGATTATGTTGGATAAACGTCAATGTATAAGATAAATAAATATGTTTATTTATTTCAAAGATTTTGGTTGAGAAGGAGTACAATTGTTGTTGATACATTCATGTACCGTTGATCGCACAATTTCGTTTAATTGTGCAATTGACAATGTTATGTTTGATTGGGCTCTCTGAGCCCCAATAATTGACGCTGAATCTCCCGGGTCCAAAACACTGGTTCCCAGTCTGTTTAAATCCTTGTATGGGTGTATCGCGCTCTCTAAGTCCGAGTCCGCATCTACATGAGACATACCGATTGTACTTCTTGAGGCCCAAGACTCTCCTGGTTTTAATTCGATTGGGCCTTGTAGACCATACCTTGATAATGATGCGGACCGGATCAATTTCCTTTCCCACCTCCCATAGTCGACGTGGGAGAAGTCGACGTCCTTATTGGAAAACTGCTTTGATAATATTTTAACTGTTGGTGCCCGGAAGGGGATATCTACTGAATGTTTAGCCGTTGATAATTTCAGTTTTCCTTTGAATTTTGCGAAATGTGTCCTTTGATGAACGTTGGTGTCTGAAACTCTATAATAGAGTTTCCATGGTATTGGGTCTTTCAACGAGAAAAATGACGATGAAAAGTAGTGGAGATCTATGTTGCATCTAATGGGAAATGTCCATGAAGCTTGTAATGATTCGTTGTCTGTCATCCTCTTGTCATGAATCTCCACTACAACTGATCCTGTTGCGTTAATAGGCACCTGTTGCCTATATTCTATGACGCAATGATCGATCTTCATACAGCTGCGACTGAATCTCGCAGATAATTGAGAAGCTGTGGAAGGAAATTGAAGGATTATCTCAGTTAGATCATGAGACAATTGATATTCGTCTCTGTGTGACTCTACATAATTAAATGCATTTGGAGGATTTGCTAACTGAGAATCCATTTAAGAAGAAATGGCCGCGCAGCTGAAGCGCAAAGATAGAGAAGCTCGACTCTAACTAGCGGAATGCTAAGAGAGAGAAACTCATTTGGTGACACTCGCATACAACTGATAAACTGAACAACCAAGAGATTATGAAATAGTTTATATTGATATAGACAAGCATTGTGTATGCTTATATAGGCAGTTGTATGCCTTTATATCGCCTTTTGAAAAAGAACATATTATTTAGTTAATATGTTAATGTGTTTTATTTGAACATGATATATATATCGGATATATATATTTGAAGAATTTAATATATTTATGGTATATTAAATGTTATATGACAGTTGAATGTTAATATCAAATTATTAATTTGGTTTATGAATTATTTGATGATTAATAAGCAAAACGATATCGTTTTGAGTCTAT
NC_038791
GTGATGGCATATTTGTAAATATGCGAGTGTCTTCCGAATGGGTTTGCGAGTGTCTCCAATTGAGGCTCCTCAAACTCTCGCATTCAATTGGAGACTGGAGTACAATATATACTAGAACCCTCAATCTCGTGAATTACGAGATTCACACACGTGGCGGCCATCCGATATAATATTACCGGATGGCCGCGCGCCCCCCTTTATTTCCGTACTTCTCCACGTGGCGCTTTAATTTAAATTAAAGATGTCTATTTTTGACTGACCAATGCTTTTGCATGTGAGGAGCTTAGTTATTTGTGTAAAACTTGGCGACTAAGTTTTACCCTCGTTTATAAATTTAAATTAAATGCATGCCCATTCCACGTGTAAGTCCAGAATGCCTAAGCGTGATGCGCCTTGGCGTAATAATGCGGGAACCTACAAGGTTTCCCGTTCTGGCAATTATTCTCCAGGCGGTGGAATGGGCTCAAAATCCAACAAGGCCAATGCATGGGTTAACAGGCCCATGTATAGAAAGCCAAGGATATATCGGATGTACAGAAGCCCAGACGTGCCCAAGGGATGTGAAGGACCTTGCAAGGTCCAATCATATGAACAACGCCATGATATATCTCATGTTGGTAAGGTTATGTGTATATCCGATATCACACGTGGGAATGGTATTACCCACCGTGTTGGTAAACGTTTTTGTGTGAAGTCTGTGTACATTTTAGGGAAGATATGGATGGATGAAAATATCAAGCTTAAGAACCATACTAATAGTGTTATATTTTGGTTGGTCCGTGACCGTAGACCATATGGAACCCCTATGGATTTTGGTCAAGTTTTTAATATGTTTGACAATGAACCCAGTACTGCTACGGTCAAGAACGATCTTCGTGATCGTTATCAAGTTATGCATAGGTTCAATGCAAAGGTGACTGGTGGTCAATATGCAAGCAACGAGCAAGCCTTGGTAAGGCGATTTTGGAAGGTGAACAACCATGTCGTCTATAACCACCAGGAAGCAGGAAAATACGAGAATCATACGGAGAATGCGTTATTGTTATATATGGCATGTACACATGCCTCTAATCCTGTATATGCGACATTGAAAATTCGGATCTATTTCTATGATTCGATAACCAATTAATAAAATTTATATTTTATTTCATGATTCTCAAGTACAGTATTTACATATGATTTGTCTGTTGCGAACTGAACAGCTCGATTGACATTGTTTAATCCTATTACGCCTAACCTATGTAAATACAATAAAACCAAATGTCTAAATCTATTTAAATATGTCGTCCCAGAAGCTTGAATCGATGTCGTCCAGACTTGGAAGTTCAGGAATGCTTTGTGGAGATCCAGTGCTTTCCTGAGGTTGTGATTGAACCTGACTTGGATGTGGTATATCCTTGTCCGTGTGTATGCTGGATCTTCCACCCGCATGATCTTGAAATAAAGGGGATTTGGTACCTCCCAAATAAAAACGGAATTCTCTGCCTGATGCGCAGTGATGTTCTCCCCTGTGCGTGAATCCATGATCTGCGCACTTGATATGGTAAAATATGGAACAGCCGCAGTTCAGGTCAATGCGTCGTCGACGAATGGCTTTACGTTTGGCAATCCTGTGCTGTGCTTTGATAGAGGGGGGCTGTGAGGGTGACGAAGATCGCATTATGAATAGTCCAGTTGTGTAAAGCTCGGTTTTCTTCTTTGTCGAGGAAGTCTTTATAACTGGAACCCTCACCTGGATTGCACAGCACGATTGATGGTATTCCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTTGATTGCCAGTCCTTTTGTGCCCCAATTAGTTCTTTCCAGTGCTTTAACTTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTATTCCACCTCGTTGGAATAGACACGTGAATTAAAGTCCAAGTGACCGCTCAAATAATTATGTGGTCCTAATGCACGAGCCCACATTGTTTTTCCTGTTCGTGAATCACCTTCGACGATGATACTAATAGGTCTCTCCGGCCGCGCAGCGGAACCCCTTCCGAAATAGTCGTCAACCCATTCTTGCATAACAACCGGAACATTGATGAATGATGACAACGGAAATGGAGGAACCCATGGTTCCGGCACTTTGAAGAAGATCCGTTCGAGATTAGAACGGATGTTGTGATTTTGAAGGACGTAATCTTTCGGTTGTTCTTCCTTTAATATCGTCAAGGCAGATTCAATTGAATCTGCGTTTAATGCCTTTGCATATGAGTCGTTGGCAGTCTGCTGACCCCCTCTTGCAGATCTGCCGTCGACTTGAAATTGTCCCCATTCGATTGTGTCTCCATCTTTGTCGATGTATGCTTTGACGTCTGAACTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGAGGATACCAGGTCGAACAATCTTTTATTTGTGCAGACGAATTTACCTTCGAACTGAATAAGCGCATGAAGATGGGGTTCACCATTCTCGTGACGTTCCTCACAGACTTTGATGAATTTTTTATTCGTCGCTGTATGAATCTTCTGAAGTTGCGAAAGAGCTTCTTCTTTCGGTATAGAGCAATGAGGATAAGTGAGGAAATAGTTTTTGGACTGAACTCTAAATCTATGAG

Gene Information

NCBI Accession YP_009507973.1
Location 512-1282
Gene Name BR1
Protein Name BR1 protein
Coding Region ATGTATACGTCTAAGTATAAACGTGGTTCGTCTAACTATCAACGACGAGGTTATTCACGTAGCCAAGGTTTTCGACGAACGTCAATTGTTAAACGACATGATGGTAAGCGTCGACAACATCAATCCAGTAAGTCTAATGAAGATCCTAAATTGTTGGTGCAATGTATACGTGAAAATCAATTTGGTCCTGATTTTGTTATGGCTCATAATACTGCCATATCCACGTTTATTAATTATCCCCAATTGGGTAAGATCGAACCTAATCGATGTAGGTCGTATATGAAGTTGAAACGCTTGCGTTTCAAAGGGACGGTTAAAATTGAACGTGTACACTCTGATGTGAACATGGATGGATTATCTCCTAAGATTGAAGGCGTATTTAGTATTGTTATTGTGGTTGATCGGAAACCACATTTAAATCCCAGTGGATGTCTTCATACATTTGATGAACTATTTGGAGCAAGGATTCATAGCCATGGGAATCTTGCTGTGATGCCTTCTTTGAAAGACCGATTTTACATACGACACGTGTTGAAGCGTGTTTTATCGGTAGATAAAGACACGACTATGATAGACGTTGAGGGTTCCACTTTGTTGTCTAATAAGCGTTATAATATGTGGTCTACGTTTAATGATTTTGATCATGACTCATGTAATGGTGCATATGCTAATATTGCTAAGAACGCTTTATTAGTGTATTATTGTTGGATGTCGGATATTATGTCTAAGGCATCGACATTTGTGTCATTTGATCTTGATTATGTTGGATAA
Protein Sequence MYTSKYKRGSSNYQRRGYSRSQGFRRTSIVKRHDGKRRQHQSSKSNEDPKLLVQCIRENQFGPDFVMAHNTAISTFINYPQLGKIEPNRCRSYMKLKRLRFKGTVKIERVHSDVNMDGLSPKIEGVFSIVIVVDRKPHLNPSGCLHTFDELFGARIHSHGNLAVMPSLKDRFYIRHVLKRVLSVDKDTTMIDVEGSTLLSNKRYNMWSTFNDFDHDSCNGAYANIAKNALLVYYCWMSDIMSKASTFVSFDLDYVG

NCBI Accession YP_009507974.1
Location 1316-2197
Gene Name BL1
Protein Name BL1 protein
Coding Region ATGGATTCTCAGTTAGCAAATCCTCCAAATGCATTTAATTATGTAGAGTCACACAGAGACGAATATCAATTGTCTCATGATCTAACTGAGATAATCCTTCAATTTCCTTCCACAGCTTCTCAATTATCTGCGAGATTCAGTCGCAGCTGTATGAAGATCGATCATTGCGTCATAGAATATAGGCAACAGGTGCCTATTAACGCAACAGGATCAGTTGTAGTGGAGATTCATGACAAGAGGATGACAGACAACGAATCATTACAAGCTTCATGGACATTTCCCATTAGATGCAACATAGATCTCCACTACTTTTCATCGTCATTTTTCTCGTTGAAAGACCCAATACCATGGAAACTCTATTATAGAGTTTCAGACACCAACGTTCATCAAAGGACACATTTCGCAAAATTCAAAGGAAAACTGAAATTATCAACGGCTAAACATTCAGTAGATATCCCCTTCCGGGCACCAACAGTTAAAATATTATCAAAGCAGTTTTCCAATAAGGACGTCGACTTCTCCCACGTCGACTATGGGAGGTGGGAAAGGAAATTGATCCGGTCCGCATCATTATCAAGGTATGGTCTACAAGGCCCAATCGAATTAAAACCAGGAGAGTCTTGGGCCTCAAGAAGTACAATCGGTATGTCTCATGTAGATGCGGACTCGGACTTAGAGAGCGCGATACACCCATACAAGGATTTAAACAGACTGGGAACCAGTGTTTTGGACCCGGGAGATTCAGCGTCAATTATTGGGGCTCAGAGAGCCCAATCAAACATAACATTGTCAATTGCACAATTAAACGAAATTGTGCGATCAACGGTACATGAATGTATCAACAACAATTGTACTCCTTCTCAACCAAAATCTTTGAAATAA
Protein Sequence MDSQLANPPNAFNYVESHRDEYQLSHDLTEIILQFPSTASQLSARFSRSCMKIDHCVIEYRQQVPINATGSVVVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFSNKDVDFSHVDYGRWERKLIRSASLSRYGLQGPIELKPGESWASRSTIGMSHVDADSDLESAIHPYKDLNRLGTSVLDPGDSASIIGAQRAQSNITLSIAQLNEIVRSTVHECINNNCTPSQPKSLK

NCBI Accession YP_009507975.1
Location 344-1129
Gene Name AR1
Protein Name coat protein
Coding Region ATGCATGCCCATTCCACGTGTAAGTCCAGAATGCCTAAGCGTGATGCGCCTTGGCGTAATAATGCGGGAACCTACAAGGTTTCCCGTTCTGGCAATTATTCTCCAGGCGGTGGAATGGGCTCAAAATCCAACAAGGCCAATGCATGGGTTAACAGGCCCATGTATAGAAAGCCAAGGATATATCGGATGTACAGAAGCCCAGACGTGCCCAAGGGATGTGAAGGACCTTGCAAGGTCCAATCATATGAACAACGCCATGATATATCTCATGTTGGTAAGGTTATGTGTATATCCGATATCACACGTGGGAATGGTATTACCCACCGTGTTGGTAAACGTTTTTGTGTGAAGTCTGTGTACATTTTAGGGAAGATATGGATGGATGAAAATATCAAGCTTAAGAACCATACTAATAGTGTTATATTTTGGTTGGTCCGTGACCGTAGACCATATGGAACCCCTATGGATTTTGGTCAAGTTTTTAATATGTTTGACAATGAACCCAGTACTGCTACGGTCAAGAACGATCTTCGTGATCGTTATCAAGTTATGCATAGGTTCAATGCAAAGGTGACTGGTGGTCAATATGCAAGCAACGAGCAAGCCTTGGTAAGGCGATTTTGGAAGGTGAACAACCATGTCGTCTATAACCACCAGGAAGCAGGAAAATACGAGAATCATACGGAGAATGCGTTATTGTTATATATGGCATGTACACATGCCTCTAATCCTGTATATGCGACATTGAAAATTCGGATCTATTTCTATGATTCGATAACCAATTAA
Protein Sequence MHAHSTCKSRMPKRDAPWRNNAGTYKVSRSGNYSPGGGMGSKSNKANAWVNRPMYRKPRIYRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDITRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFNAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_009507976.1
Location 1126-1524
Gene Name AL3
Protein Name AL3 protein
Coding Region ATGGATTCACGCACAGGGGAGAACATCACTGCGCATCAGGCAGAGAATTCCGTTTTTATTTGGGAGGTACCAAATCCCCTTTATTTCAAGATCATGCGGGTGGAAGATCCAGCATACACACGGACAAGGATATACCACATCCAAGTCAGGTTCAATCACAACCTCAGGAAAGCACTGGATCTCCACAAAGCATTCCTGAACTTCCAAGTCTGGACGACATCGATTCAAGCTTCTGGGACGACATATTTAAATAGATTTAGACATTTGGTTTTATTGTATTTACATAGGTTAGGCGTAATAGGATTAAACAATGTCAATCGAGCTGTTCAGTTCGCAACAGACAAATCATATGTAAATACTGTACTTGAGAATCATGAAATAAAATATAAATTTTATTAA
Protein Sequence MDSRTGENITAHQAENSVFIWEVPNPLYFKIMRVEDPAYTRTRIYHIQVRFNHNLRKALDLHKAFLNFQVWTTSIQASGTTYLNRFRHLVLLYLHRLGVIGLNNVNRAVQFATDKSYVNTVLENHEIKYKFY

NCBI Accession YP_009507977.1
Location 1271-1789
Gene Name AL2
Protein Name AL2 protein
Coding Region ATGGAAAGCCGGTTCAAATTAAAGGAGGAATACCATCAATCGTGCTGTGCAATCCAGGTGAGGGTTCCAGTTATAAAGACTTCCTCGACAAAGAAGAAAACCGAGCTTTACACAACTGGACTATTCATAATGCGATCTTCGTCACCCTCACAGCCCCCCTCTATCAAAGCACAGCACAGGATTGCCAAACGTAAAGCCATTCGTCGACGACGCATTGACCTGAACTGCGGCTGTTCCATATTTTACCATATCAAGTGCGCAGATCATGGATTCACGCACAGGGGAGAACATCACTGCGCATCAGGCAGAGAATTCCGTTTTTATTTGGGAGGTACCAAATCCCCTTTATTTCAAGATCATGCGGGTGGAAGATCCAGCATACACACGGACAAGGATATACCACATCCAAGTCAGGTTCAATCACAACCTCAGGAAAGCACTGGATCTCCACAAAGCATTCCTGAACTTCCAAGTCTGGACGACATCGATTCAAGCTTCTGGGACGACATATTTAAATAG
Protein Sequence MESRFKLKEEYHQSCCAIQVRVPVIKTSSTKKKTELYTTGLFIMRSSSPSQPPSIKAQHRIAKRKAIRRRRIDLNCGCSIFYHIKCADHGFTHRGEHHCASGREFRFYLGGTKSPLFQDHAGGRSSIHTDKDIPHPSQVQSQPQESTGSPQSIPELPSLDDIDSSFWDDIFK

References More References in PubMed

1

NAC Candidate Gene Marker for bgm-1 and Interaction With QTL for Resistance to Bean Golden Yellow Mosaic Virus in Common Bean.

Soler-Garzón A, et al.  Front Plant Sci. 2021 Mar 25;12:628443. doi: 10.3389/fpls.2021.628443. eCollection 2021.

PMID: 33841459
2

RNAi-mediated resistance to Bean golden mosaic virus in genetically engineered common bean (Phaseolus vulgaris).

Bonfim K, et al.  Mol Plant Microbe Interact. 2007 Jun;20(6):717-26. doi: 10.1094/MPMI-20-6-0717.

PMID: 17555279
3

Bean golden yellow mosaic virus from Chiapas, Mexico: Characterization, Pseudorecombination with Other Bean-Infecting Geminiviruses and Germ Plasm Screening.

Garrido-Ramirez ER, et al.  Phytopathology. 2000 Nov;90(11):1224-32. doi: 10.1094/PHYTO.2000.90.11.1224.

PMID: 18944424
4

Resistance to Bean Golden Mosaic Virus in Bean Genotypes.

Bianchini A.  Plant Dis. 1999 Jul;83(7):615-620. doi: 10.1094/PDIS.1999.83.7.615.

PMID: 30845611
5

PCR and DNA Hybridization Methods for Specific Detection of Bean-Infecting Begomoviruses in the Americas and Caribbean.

Potter JL, et al.  Plant Dis. 2003 Oct;87(10):1205-1212. doi: 10.1094/PDIS.2003.87.10.1205.

PMID: 30812724
6

Cuban Isolate of Bean golden yellow mosaic virus is a Member of the Mesoamerican BGYMV Group.

Echemendía AL, et al.  Plant Dis. 2001 Sep;85(9):1030. doi: 10.1094/PDIS.2001.85.9.1030C.

PMID: 30823097
7

Macroptilium yellow mosaic virus, a New Begomovirus Infecting Macroptilium lathyroides in Cuba.

Ramos PL, et al.  Plant Dis. 2002 Sep;86(9):1049. doi: 10.1094/PDIS.2002.86.9.1049B.

PMID: 30818538
8

First Report of a Bean-Infecting Begomovirus from Macroptilium lathyroides in Puerto Rico That Is Distinct from Bean Golden Mosaic Virus.

Idris AM, et al.  Plant Dis. 1999 Nov;83(11):1071. doi: 10.1094/PDIS.1999.83.11.1071C.

PMID: 30841284
9

Interactions between Common Bean Viruses and Their Whitefly Vector.

Ferreira AL, et al.  Viruses. 2024 Oct 2;16(10):1567. doi: 10.3390/v16101567.

PMID: 39459901
10

Begomoviruses Associated with Bean Golden Mosaic Disease in Nicaragua.

Karkashian J, et al.  Plant Dis. 2011 Aug;95(8):901-906. doi: 10.1094/PDIS-03-10-0165.

PMID: 30732116