Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000840905.1 |
Isolate | Brazil |
Release date | 2015/2/12 |
Submitter | Jovel,J., Reski,G., Rothenstein,D., Ringel,M., Frischmuth,T., Jeske,H. |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_957671.1 |
---|---|
Location | 268-1023 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGGGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTTAGCCGCTCTTCTAATTTCTCACCTCGTGGAGGTGGAGGCCCAAAATATAACAAGGCCTCAGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATATACAGGACGCTAAGGACGCCTGATATTCCTAGAGGCTGTGAAGGGCCTTGTAAAGTCCAGTCATACGAGCAACGCCATGATATCTCACATGTCGGGAAGGTCATGTGCATCTCTGACGTCACCCGTGGCAACGGTATAGCACACCGTGTCGGTAAGCGTTTTTGCGTTAAGTCTGTGTACATTTTAGGGAAGATATGGATGGACGAGAACATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGTACTCCTATGGACTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGCACTGCTACGGTGAAGAACGATCTCCGTGATCGTTATCAAGTTATGCACAAGTTCTACGCCAAGGTCACTGGTGGTCAATATGCCAGCAACGAGCAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAGGAAGCTGGCAAGTATGAGAATCACACGGAGAATGCTTTGTTACTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTTAAGATTCGGATCTATTTCTACGATTCGATAACCAATTAA |
Protein Sequence | MPKRDPSWRQMAGTSKVSRSSNFSPRGGGGPKYNKASEWVNRPMYRKPRIYRTLRTPDIPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGIAHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | NP_957672.1 |
---|---|
Location | 1020-1418 |
Gene Name | AC3 |
Protein Name | replication enhancer |
Coding Region | ATGGATTCACGCACCGGGGAATTCATCACTGCACATCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATGTACAACGTAGAGGACCTGCCGTACACGAGGACCAGAGTGTACCACATACAGATAAGGTTCAACCACAGCCTCAGGAAAGTATTGGGTCTCCACAAGGCCTACCTGAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGAACGACTTATTTGATTAGGCTTAGACGCCTTGTAATGATGTACTTAGACCAATTAGGTGTAATTTCCCTTAATAATGTAATTAGAGCTGTTCGCTTTGCCACTGACAAAGCCTATGTAAACTATGTACTTGAAGATCATGATATAAAATTCAAATTTTATTAA |
Protein Sequence | MDSRTGEFITAHQAENGVYIWEITNPLYFKMYNVEDLPYTRTRVYHIQIRFNHSLRKVLGLHKAYLNFQVWTTSLTASGTTYLIRLRRLVMMYLDQLGVISLNNVIRAVRFATDKAYVNYVLEDHDIKFKFY |
NCBI Accession | NP_957673.1 |
---|---|
Location | 1165-1584 |
Gene Name | AC2 |
Protein Name | transcriptional regulator |
Coding Region | ATGCACAGCTCCGTGCTTGGACACTCCACAATGCTAAATTCATCTTCCTCGACGCCCCCCTCTATCAAACCGAGACACAGGATTGCCAAGAAGAGAGCCATCAGGCGTAGACGAGTGGACATACAGTGCGGCTGCTCCATATACCTACACCTTAACTGCTCCGGCCATGGATTCACGCACCGGGGAATTCATCACTGCACATCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATGTACAACGTAGAGGACCTGCCGTACACGAGGACCAGAGTGTACCACATACAGATAAGGTTCAACCACAGCCTCAGGAAAGTATTGGGTCTCCACAAGGCCTACCTGAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGAACGACTTATTTGATTAG |
Protein Sequence | MHSSVLGHSTMLNSSSSTPPSIKPRHRIAKKRAIRRRRVDIQCGCSIYLHLNCSGHGFTHRGIHHCTSGREWRLYLGDNKSPVFQDVQRRGPAVHEDQSVPHTDKVQPQPQESIGSPQGLPELPSLDDFSDSFWNDLFD |
NCBI Accession | NP_957674.1 |
---|---|
Location | 1475-2551 |
Gene Name | AC1 |
Protein Name | replication associated protein |
Coding Region | ATGCCACCGCCAAAGCGTTTTAAAATAAGTGCCAAGAATTATTTCTTGACTTATCCACAGTGCTCCTTAACCAAAGAGGAGACACTTTCCCAATTACAGAGCTTATCGACACCAGTTAACAAGAAGTTCATCAAAATCTGCAGAGAGCTCCACGAAAATGGGGAGCCTCATCTCCACGTCCTTATACAGTTCCAGGGGAAATTCCAATGCACGAATAACAGACTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCTAACATACAGGGAGCTAAATCCTCGTCCGACGTTAAGTCCTACATCGAAAAGGACGGAGATACTCTCGAGTGGGGGGAATTCCAGATCGACGGTAGAAGTGCTAGAGGCGGTTGCCAGACAGCTAACGACGCTGCCGCAGAAGCCTTGAACGCCCCTTCCAAAGAAATCGCCTTGCAGATAATCCGGGAGAAGTTGCCGGAAAAGTTCCTATTCCAGTTTCACAATCTAAATAGTAATTTAGATAGGATCTTTGCAAAGGCTCCGGAGCCATGGGCCCCTCCGTTTCGACTCTCCTCATTCACTGACGTGCCAGACGAGATGCAAGAGTGGGCCGATGATTATTTTGGGAGGGGTTCCGCTGCGCGGCCATTGAGGCCTATAAGTTTAATTGTTGAAGGTGGTTCTCGAACTGGCAAGACGATGTGGGCTAGAGCATTAGGCCCACATAATTACTTCAGTGGCCATCTGGATTTCAACTCAAAGGTATATTCTGATCAAGTGGAGTATAACGTCATTGATGACGTCGCTCCGCATTACCTAAAGTTGAAACACTGGAAAGAGCTAGTAGGGGCCCAACAAAAATGGCAGACAAACTGCAAGTACGGAAAGCCTCGTTTGATTGAAGGTGGGGTCCCTTCAATCGTGCTATGCAATCCTGGAGAGGGGGCCTGCTATAAAGACTTCCTAGACAAAGAGGAAAATGCACAGCTCCGTGCTTGGACACTCCACAATGCTAAATTCATCTTCCTCGACGCCCCCCTCTATCAAACCGAGACACAGGATTGCCAAGAAGAGAGCCATCAGGCGTAG |
Protein Sequence | MPPPKRFKISAKNYFLTYPQCSLTKEETLSQLQSLSTPVNKKFIKICRELHENGEPHLHVLIQFQGKFQCTNNRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYIEKDGDTLEWGEFQIDGRSARGGCQTANDAAAEALNAPSKEIALQIIREKLPEKFLFQFHNLNSNLDRIFAKAPEPWAPPFRLSSFTDVPDEMQEWADDYFGRGSAARPLRPISLIVEGGSRTGKTMWARALGPHNYFSGHLDFNSKVYSDQVEYNVIDDVAPHYLKLKHWKELVGAQQKWQTNCKYGKPRLIEGGVPSIVLCNPGEGACYKDFLDKEENAQLRAWTLHNAKFIFLDAPLYQTETQDCQEESHQA |
NCBI Accession | NP_957675.1 |
---|---|
Location | 2137-2394 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGGGGAGCCTCATCTCCACGTCCTTATACAGTTCCAGGGGAAATTCCAATGCACGAATAACAGACTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCTAACATACAGGGAGCTAAATCCTCGTCCGACGTTAAGTCCTACATCGAAAAGGACGGAGATACTCTCGAGTGGGGGGAATTCCAGATCGACGGTAGAAGTGCTAGAGGCGGTTGCCAGACAGCTAACGACGCTGCCGCAGAAGCCTTGA |
Protein Sequence | MGSLISTSLYSSRGNSNARITDSSTWYPQPGQHISILTYRELNPRPTLSPTSKRTEILSSGGNSRSTVEVLEAVARQLTTLPQKP |
NCBI Accession | NP_957676.1 |
---|---|
Location | 546-1316 |
Gene Name | BV1 |
Protein Name | nuclear shuttle protein |
Coding Region | ATGTTTCCCAGTAGGTATAGACGTGGTTGGTCGTCTAATCAGCGACGAGGTTACACACGTAATCCCGTGTTTAAGCGTTCTTATGTTGCTAAACGAAGTGAAGTAAAACGACGACCCAGTTATCCAAACAAGACCCAAGAAGAAGGGAAACTAGCAGCCCAACGGATGCACGAGAACCAGTTTGGGCCTGAATTTGTTATGGGCCATAATTCAGCCATTTCGACGTTCATCACTTACCCTTCGCTGGGGAAGGCTCTCCCGAACCGATCCAGGTCATATATTAAGTTAAGACGACTGCGTTTTAAGGGTACTGTCAAGGTTGAGCGTGTGCATGCTAACGTCAACATGGATGGGTCCAACCCAAAGGTGGAAGGAGTCTTCTCTCTTGTTGTTGTTGTGGATCGTAAACCCCATCTGGGCTCATCTGGAGCCCTTCTTACATTTGATGAGTTATTCGGTGCTAGGATCCACAGCCATGGTAATCTCGCGATAGTACCCTCTCTGAAAGACCGTTTCTACATACGACACGTGTTCAAACGTGTGTTGTCCGTTGAGAAGGATTCCATGATGGTGGACGTAGAAGGGACGACCACTCTAACTACCAGGCGTTTTAGTTGTTGGTCTTCGTTTACGGATGTTGACCGTGAATCGTGTAACGGCGTCTATGCTAACATAAGCAAGAACGCCCTTTTAGTTTATTACTGCTGGATGTCGGATAATATTTCCAAGGCATCGACATTTGTTTCGTTTGACCTCGATTATATTGGCTAA |
Protein Sequence | MFPSRYRRGWSSNQRRGYTRNPVFKRSYVAKRSEVKRRPSYPNKTQEEGKLAAQRMHENQFGPEFVMGHNSAISTFITYPSLGKALPNRSRSYIKLRRLRFKGTVKVERVHANVNMDGSNPKVEGVFSLVVVVDRKPHLGSSGALLTFDELFGARIHSHGNLAIVPSLKDRFYIRHVFKRVLSVEKDSMMVDVEGTTTLTTRRFSCWSSFTDVDRESCNGVYANISKNALLVYYCWMSDNISKASTFVSFDLDYIG |
NCBI Accession | NP_957677.1 |
---|---|
Location | 1398-2279 |
Gene Name | BC1 |
Protein Name | movement protein |
Coding Region | ATGGAATCTCAGCTAGTGAATCCTCCAAACGCATTCAATTATATTGAGTCTCAGCGTGATGAATATCAGCTTTCTCATGACCTAACAGAGATTCTTCTTCAATTTCCCTCCACGGCGTCCCAATTAAGCGCACGGCTCAGTCGTAGCTGTATGAAAATAGACCATTGCGTCATAGAATACAGACAGCAGGTACCCATTAACGCCGTGGGTTCCGTCGTCGTGGAGATCCATGACAGGAGAATGACTGACAACGAGTCGCTGCAAGCGTCCTGGACGTTTCCGATACGATGCAACATCGATCTCCATTACTTTTCCTCGTCCTTCTTCTCCCTCAAGGACCCAATTCCATGGAAATTGTACTACAGAGTGTGCGACACTAACGTCCATCAGAGGACCCATTTCGCGAAATTCAAGGGAATGCTGAAGCTGTCGACGGCCAAACACTCTGTAGACATACCTTTCCGTGCCCCAACAGTGAAGATCCTCTCCAAGCAGTTTACAGAGAAGGACATCGATTTCAGCCACGTTGGCTACGGAAAGTGGGAGAGAAAGATGATCAGATCTGCGTCCATATCGGGTGTTGGGTTGCACAGCCCAATTGAATTAAGGCCTGGAGAGTCCTGGGCTGTCAGGAGCACTGTAGGGATCAGTCACTCAGTCGCAGACTCCGATGCAGAGAACGCGGCGCACCCATATAGGCAGCTGCACAGGCTAGGAACCAGTAGTCTAGACCCAGGTGACTCGGCCTCAATAGTGGGTGCTCAAAGGGCCCAATCCAACATAACGATGTCAATGGCCCAGATGATAGAACTAGTTAGGGCCACGGCCCAGGAATGTATCAACAGTAACTGTACCCCTTCTCAACCCAAATCATTGCACTGA |
Protein Sequence | MESQLVNPPNAFNYIESQRDEYQLSHDLTEILLQFPSTASQLSARLSRSCMKIDHCVIEYRQQVPINAVGSVVVEIHDRRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGMLKLSTAKHSVDIPFRAPTVKILSKQFTEKDIDFSHVGYGKWERKMIRSASISGVGLHSPIELRPGESWAVRSTVGISHSVADSDAENAAHPYRQLHRLGTSSLDPGDSASIVGAQRAQSNITMSMAQMIELVRATAQECINSNCTPSQPKSLH |
1 |
First Report of Sida micrantha mosaic virus Infecting Oxalis Species in Brazil. Fontenele RS, et al. Plant Dis. 2018 Sep;102(9):1862. doi: 10.1094/PDIS-01-18-0149-PDN. Epub 2018 Jun 29. PMID: 30125166 |
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2 |
First Report of Sida micrantha mosaic virus in Phaseolus vulgaris in Brazil. Fernandes-Acioli NAN, et al. Plant Dis. 2011 Sep;95(9):1196. doi: 10.1094/PDIS-05-10-0343. PMID: 30732032 |
3 |
Wyant PS, et al. Arch Virol. 2011 Feb;156(2):347-52. doi: 10.1007/s00705-010-0876-9. Epub 2010 Dec 19. PMID: 21170729 |
4 |
Jovel J, et al. Arch Virol. 2004 Apr;149(4):829-41. doi: 10.1007/s00705-003-0235-1. Epub 2003 Dec 8. PMID: 15045569 |
5 |
In planta cloning of geminiviral DNA: the true Sida micrantha mosaic virus. Jeske H, et al. J Virol Methods. 2010 Feb;163(2):301-8. doi: 10.1016/j.jviromet.2009.10.014. Epub 2009 Oct 28. PMID: 19878698 |
6 |
Evolutionary liberties of the Abutilon mosaic virus cluster. Fischer A, et al. Virus Genes. 2015 Feb;50(1):63-70. doi: 10.1007/s11262-014-1125-1. Epub 2014 Oct 15. PMID: 25315632 |
7 |
A study of weeds as potential inoculum sources for a tomato-infecting begomovirus in central Brazil. Barreto SS, et al. Phytopathology. 2013 May;103(5):436-44. doi: 10.1094/PHYTO-07-12-0174-R. PMID: 23489523 |
8 |
Quadros AFF, et al. Virus Res. 2023 Jan 2;323:198969. doi: 10.1016/j.virusres.2022.198969. Epub 2022 Oct 17. PMID: 36257487 |
9 |
Detection and identification of the first viruses in chia (Salvia hispanica). Celli MG, et al. Viruses. 2014 Sep 19;6(9):3450-7. doi: 10.3390/v6093450. PMID: 25243369 |
10 |
Three distinct begomoviruses associated with soybean in central Brazil. Fernandes FR, et al. Arch Virol. 2009;154(9):1567-70. doi: 10.1007/s00705-009-0463-0. Epub 2009 Jul 28. PMID: 19636495 |