Sida leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000866845.1
Isolate China:Hainan
Release date 2015/2/13
Submitter Guo,X., Zhou,X.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_007638
ACCGGATAGCCGCGCGATTTTTTAAAGTGGTCCCCCCCACTAAATGTTGTCGACCAACCAGAAGGCGCGCTCAAAGCTTAATTGTTTTTTCCCTCCCTATATAATACTTCCCTCGTAAGTTTTGGGTTCAAATATGTGGGACCCTTTAGAGAACGAATTCCCTGAAACCGTTCACGGTTTCCGTTCTATGCTTGCGGTGAAGTATATGCAGGAGATTGCGAAGAGCTACGAACCTAGCACATTGGGTTTTGAATACGTCCGTGATCTTATCTCCGTTCTGAGGTGTAAGGATTATGTCCAAGCGTCCTGCAAGTATGGCGTATTCCTCTCCAATTTCTTCCGCGCGTCGAAGGCTGAACTTCGACAGTCCTCGCCCATCAGTTGCTGCTGCCCTTACTGCCCCAGGCATAAGGAGAAGAAGATGGACCAACAGGCCCATGAACAGAAAGCCCAGGTTCTACAGAATGTATCGAACCCCTGATGTTCCTAAGGGCTGTGAGGGCCCATGTAAGGTGCAATCGTTCGATGCCAAAGACGATATTGGGCACATGGGTAAGGTTATTTGTTTGTCTGATGTTACAAGAGGTATTGGGCTGACCCACCGAGTGGGTAAGCGTTTCTGTGTGAAATCATTGTATTTCGTAGGGAAAATATGGATGGACGAGAATATCAAGGTGAAAAACCACACGAACACCGTTATGTTTTGGATTGTTAGGGATCGGCGACCTACGGGAACTCCATTGGATTTCCAGCAGGTGTTTAATGTCTACGATAACGAGCCCGCCACTGCTACAGTCAAGAACGACAAACGTGATCGTTTCCAGGTTTTAAGGAGGTTCCATGCAACGGTGACCGGAGGGCAATATGCAGCTAAGGAGTCTGCTATTATTAGGAAGTTCTATCGTGTGAACAATTATGTTGTTTACAACCACCAGGAGGCCGGAAAATACGAGAACCATACTGAGAATGCTTTGCTCTTGTACATGGCATGTACGCATGCCTCTAATCCTGTGTATGCTACTTTGAAATGTAGGAGTTATTTCTACGATACTGTAACGAATTAAGATTAATAAAGGTTGAATTTTATTGACTCAGTTTGTTGCACCTGAATTGTGCCTTGAATTACATTGTATAATACATGATCAAAAGCCCTAATTACATTATTAATACTAATAACTCCTAATCTATCTAAGTACCCAAGAACTTGATTGCGTAAGACCCTCAAGAAACGCCATGTCTGAGGATGTAAACGAGTCCAGATCCGGAAGGTTATGAAACATTTGTGAATCCCCAAGGCTTTCCTCAGGTTGTGGTTGAACCTCACTTGGACGGTTATGATGTCGTGGTTGCGGAGGAACGGCCTGTCCAGGTGGTCTAGGATCTTGAAATACAGGGGATTTGCCATATCCCAGGTATATACGCCACTCGTCGCTTGAGCTGCAGTGATGTATTCCCCTGTGCGTGAATCCATGGTTGTGACAGTTGAGACTGCGGAAGTATGTGCACCCGCATTCAAGGTCCACCCTCTTCCTGCGATTGTACTTCTTCCTCACCTTCTGATGCTCGATTTTGATGGGCACCTGAGTACAATGGCTCTGTGAGGGTGACGAACGACGCATTTTTTAAAGCCCACGTCTTTAAAGCGGAATTCTTTTCCTCGTCCAGGTACTCTTTATAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCTTTAAAGTGTTTGAGAAAATGGGGATCAACGTCATCGATGACGTTGTACCATGCGTCGTTGCTGTACACCTTTGGGCTTAGGTCTAGATGCCCACACAAGTAATTATGTGGACCTAATGACCTGGCCCACATCGTCTTCCCTGTTCTACTGTCACCTTCTACCACTAAACTTAAGGGTCTCAGAGGCCGCGCAGCGGCCGCCACTACATTCTCGCACGCCCACTCTTCGAGTTCTTCCGGAACTCGATCAAAAGAAGAGACAGAAAAAGGAGAAACATAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAGTTAGCATTTAAATTATGAAATTGTAAAACATAATCTTTAGGGGCTAGTTCCCTAAGTACTCTAAGAGCCTCCGGCTTACTGCCTGTGTTAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCCCCTCTGGCAGATCTTCCGTCGATCTGAAACTCTCCCCATTCGATGGTGTCGCCGTCCTTGTCGATGTAGGACTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGGTTTGGGGAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATGAGCACGTGAATATGAGGTTCCCCATTCTCGTGGAGTTCTCTGCAGACCTTAATGTATTTTTTGTTGGTTGGGGTGTTTAGGTTTTGGATTTGGGAAAGTGTTTCCTCTTTAGTAAGAGAGCATTTGGGATAAGTAAGGAAATAATTTTTGCAATAAATGTTAAAGCGTTTAGAGGGAGCCATAATGGTCAATGATCACCGATTGACTCGCTCTTGCAACTCTCTCTGGTATTTCGGTGATCAATATATAGTGATCACCAAATGGCATTAATCGTAAATACCCATAGAAATTCAAATCCCTCGCGCTCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_425029.1
Location 134-481
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGACCCTTTAGAGAACGAATTCCCTGAAACCGTTCACGGTTTCCGTTCTATGCTTGCGGTGAAGTATATGCAGGAGATTGCGAAGAGCTACGAACCTAGCACATTGGGTTTTGAATACGTCCGTGATCTTATCTCCGTTCTGAGGTGTAAGGATTATGTCCAAGCGTCCTGCAAGTATGGCGTATTCCTCTCCAATTTCTTCCGCGCGTCGAAGGCTGAACTTCGACAGTCCTCGCCCATCAGTTGCTGCTGCCCTTACTGCCCCAGGCATAAGGAGAAGAAGATGGACCAACAGGCCCATGAACAGAAAGCCCAGGTTCTACAGAATGTATCGAACCCCTGA
Protein Sequence MWDPLENEFPETVHGFRSMLAVKYMQEIAKSYEPSTLGFEYVRDLISVLRCKDYVQASCKYGVFLSNFFRASKAELRQSSPISCCCPYCPRHKEKKMDQQAHEQKAQVLQNVSNP

NCBI Accession YP_425030.1
Location 294-1064
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCCAAGCGTCCTGCAAGTATGGCGTATTCCTCTCCAATTTCTTCCGCGCGTCGAAGGCTGAACTTCGACAGTCCTCGCCCATCAGTTGCTGCTGCCCTTACTGCCCCAGGCATAAGGAGAAGAAGATGGACCAACAGGCCCATGAACAGAAAGCCCAGGTTCTACAGAATGTATCGAACCCCTGATGTTCCTAAGGGCTGTGAGGGCCCATGTAAGGTGCAATCGTTCGATGCCAAAGACGATATTGGGCACATGGGTAAGGTTATTTGTTTGTCTGATGTTACAAGAGGTATTGGGCTGACCCACCGAGTGGGTAAGCGTTTCTGTGTGAAATCATTGTATTTCGTAGGGAAAATATGGATGGACGAGAATATCAAGGTGAAAAACCACACGAACACCGTTATGTTTTGGATTGTTAGGGATCGGCGACCTACGGGAACTCCATTGGATTTCCAGCAGGTGTTTAATGTCTACGATAACGAGCCCGCCACTGCTACAGTCAAGAACGACAAACGTGATCGTTTCCAGGTTTTAAGGAGGTTCCATGCAACGGTGACCGGAGGGCAATATGCAGCTAAGGAGTCTGCTATTATTAGGAAGTTCTATCGTGTGAACAATTATGTTGTTTACAACCACCAGGAGGCCGGAAAATACGAGAACCATACTGAGAATGCTTTGCTCTTGTACATGGCATGTACGCATGCCTCTAATCCTGTGTATGCTACTTTGAAATGTAGGAGTTATTTCTACGATACTGTAACGAATTAA
Protein Sequence MSKRPASMAYSSPISSARRRLNFDSPRPSVAAALTAPGIRRRRWTNRPMNRKPRFYRMYRTPDVPKGCEGPCKVQSFDAKDDIGHMGKVICLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVMFWIVRDRRPTGTPLDFQQVFNVYDNEPATATVKNDKRDRFQVLRRFHATVTGGQYAAKESAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKCRSYFYDTVTN

NCBI Accession YP_425031.1
Location 1067-1471
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGAATACATCACTGCAGCTCAAGCGACGAGTGGCGTATATACCTGGGATATGGCAAATCCCCTGTATTTCAAGATCCTAGACCACCTGGACAGGCCGTTCCTCCGCAACCACGACATCATAACCGTCCAAGTGAGGTTCAACCACAACCTGAGGAAAGCCTTGGGGATTCACAAATGTTTCATAACCTTCCGGATCTGGACTCGTTTACATCCTCAGACATGGCGTTTCTTGAGGGTCTTACGCAATCAAGTTCTTGGGTACTTAGATAGATTAGGAGTTATTAGTATTAATAATGTAATTAGGGCTTTTGATCATGTATTATACAATGTAATTCAAGGCACAATTCAGGTGCAACAAACTGAGTCAATAAAATTCAACCTTTATTAA
Protein Sequence MDSRTGEYITAAQATSGVYTWDMANPLYFKILDHLDRPFLRNHDIITVQVRFNHNLRKALGIHKCFITFRIWTRLHPQTWRFLRVLRNQVLGYLDRLGVISINNVIRAFDHVLYNVIQGTIQVQQTESIKFNLY

NCBI Accession YP_425032.1
Location 1185-1619
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCGTCGTTCGTCACCCTCACAGAGCCATTGTACTCAGGTGCCCATCAAAATCGAGCATCAGAAGGTGAGGAAGAAGTACAATCGCAGGAAGAGGGTGGACCTTGAATGCGGGTGCACATACTTCCGCAGTCTCAACTGTCACAACCATGGATTCACGCACAGGGGAATACATCACTGCAGCTCAAGCGACGAGTGGCGTATATACCTGGGATATGGCAAATCCCCTGTATTTCAAGATCCTAGACCACCTGGACAGGCCGTTCCTCCGCAACCACGACATCATAACCGTCCAAGTGAGGTTCAACCACAACCTGAGGAAAGCCTTGGGGATTCACAAATGTTTCATAACCTTCCGGATCTGGACTCGTTTACATCCTCAGACATGGCGTTTCTTGAGGGTCTTACGCAATCAAGTTCTTGGGTACTTAGATAG
Protein Sequence MRRSSPSQSHCTQVPIKIEHQKVRKKYNRRKRVDLECGCTYFRSLNCHNHGFTHRGIHHCSSSDEWRIYLGYGKSPVFQDPRPPGQAVPPQPRHHNRPSEVQPQPEESLGDSQMFHNLPDLDSFTSSDMAFLEGLTQSSSWVLR

NCBI Accession YP_425033.1
Location 1513-2607
Gene Name AC1
Protein Name replication protein
Coding Region ATGGCTCCCTCTAAACGCTTTAACATTTATTGCAAAAATTATTTCCTTACTTATCCCAAATGCTCTCTTACTAAAGAGGAAACACTTTCCCAAATCCAAAACCTAAACACCCCAACCAACAAAAAATACATTAAGGTCTGCAGAGAACTCCACGAGAATGGGGAACCTCATATTCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTCTCCCCAAACCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGTCCTACATCGACAAGGACGGCGACACCATCGAATGGGGAGAGTTTCAGATCGACGGAAGATCTGCCAGAGGGGGACAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACACAGGCAGTAAGCCGGAGGCTCTTAGAGTACTTAGGGAACTAGCCCCTAAAGATTATGTTTTACAATTTCATAATTTAAATGCTAACTTAGATAGGATTTTTACACCTCCAATGGAGGTTTATGTTTCTCCTTTTTCTGTCTCTTCTTTTGATCGAGTTCCGGAAGAACTCGAAGAGTGGGCGTGCGAGAATGTAGTGGCGGCCGCTGCGCGGCCTCTGAGACCCTTAAGTTTAGTGGTAGAAGGTGACAGTAGAACAGGGAAGACGATGTGGGCCAGGTCATTAGGTCCACATAATTACTTGTGTGGGCATCTAGACCTAAGCCCAAAGGTGTACAGCAACGACGCATGGTACAACGTCATCGATGACGTTGATCCCCATTTTCTCAAACACTTTAAAGAGTTTATGGGGGCCCAGAGGGACTGGCAAAGCAATACCAAGTACGGCAAGCCAGTTCAAATTAAAGGCGGGATCCCAACAATCTTCCTTTGCAATCCAGGGCCCAATTCCAGCTATAAAGAGTACCTGGACGAGGAAAAGAATTCCGCTTTAAAGACGTGGGCTTTAAAAAATGCGTCGTTCGTCACCCTCACAGAGCCATTGTACTCAGGTGCCCATCAAAATCGAGCATCAGAAGGTGAGGAAGAAGTACAATCGCAGGAAGAGGGTGGACCTTGA
Protein Sequence MAPSKRFNIYCKNYFLTYPKCSLTKEETLSQIQNLNTPTNKKYIKVCRELHENGEPHIHVLIQFEGKYKCQNQRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQTANDAYAAALNTGSKPEALRVLRELAPKDYVLQFHNLNANLDRIFTPPMEVYVSPFSVSSFDRVPEELEEWACENVVAAAARPLRPLSLVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKTWALKNASFVTLTEPLYSGAHQNRASEGEEEVQSQEEGGP

NCBI Accession YP_425034.1
Location 2148-2450
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGGAACCTCATATTCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTCTCCCCAAACCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGTCCTACATCGACAAGGACGGCGACACCATCGAATGGGGAGAGTTTCAGATCGACGGAAGATCTGCCAGAGGGGGACAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACACAGGCAGTAAGCCGGAGGCTCTTAGAGTACTTAGGGAACTAG
Protein Sequence MGNLIFTCSSSSRGNTSARISDSSTWSPQTGQHISIRTFRELNQAQMSSPTSTRTATPSNGESFRSTEDLPEGDNRQPTTLTPQHLTQAVSRRLLEYLGN

References More References in PubMed

1

First Report of Sida leaf curl virus and Associated Betasatellite from Tobacco.

Wang D, et al.  Plant Dis. 2022 Mar;106(3):1078. doi: 10.1094/PDIS-05-21-1044-PDN. Epub 2022 Feb 9.

PMID: 34713725
2

Sida chlorotic leaf virus: a new recombinant begomovirus found in non-cultivated plants and Cucumis sativus L.

García-Rodríguez DA, et al.  PeerJ. 2023 Mar 22;11:e15047. doi: 10.7717/peerj.15047. eCollection 2023.

PMID: 36974135
3

An interspecies recombinant sida yellow mosaic China virus isolate and betasatellite cause a leaf curl disease in tobacco in Hainan, China.

Wang D, et al.  Plant Dis. 2023 Sep 24. doi: 10.1094/PDIS-07-23-1346-RE. Online ahead of print.

PMID: 37743589
4

Cotton leaf curl Gezira virus-satellite DNAs represent a divergent, geographically isolated Nile Basin lineage: predictive identification of a satDNA REP-binding motif.

Idris AM, et al.  Virus Res. 2005 Apr;109(1):19-32. doi: 10.1016/j.virusres.2004.10.002. Epub 2004 Nov 23.

PMID: 15826909
5

Association of an alphasatellite with tomato yellow leaf curl virus and ageratum yellow vein virus in Japan is suggestive of a recent introduction.

Shahid MS, et al.  Viruses. 2014 Jan 14;6(1):189-200. doi: 10.3390/v6010189.

PMID: 24424499
6

Differential Transcriptional Responses in Two Old World Bemisia tabaci Cryptic Species Post Acquisition of Old and New World Begomoviruses.

Mugerwa H, et al.  Cells. 2022 Jun 29;11(13):2060. doi: 10.3390/cells11132060.

PMID: 35805143
7

Molecular analysis of Cotton leaf curl virus-Sudan reveals an evolutionary history of recombination.

Idris AM, et al.  Virus Genes. 2002 Jun;24(3):249-56. doi: 10.1023/a:1015380600089.

PMID: 12086146
8

Differential Transmission of Old and New World Begomoviruses by Middle East-Asia Minor 1 (MEAM1) and Mediterranean (MED) Cryptic Species of Bemisia tabaci.

Gautam S, et al.  Viruses. 2022 May 20;14(5):1104. doi: 10.3390/v14051104.

PMID: 35632844
9

Complete nucleotide sequence of a novel monopartite begomovirus infecting Ageratum conyzoides in China.

Li P, et al.  Arch Virol. 2018 Dec;163(12):3443-3446. doi: 10.1007/s00705-018-4004-6. Epub 2018 Aug 25.

PMID: 30145682
10

Two new begomoviruses infecting tomato and Hibiscus sp. in the Amazon region of Brazil.

Quadros AFF, et al.  Arch Virol. 2019 Jul;164(7):1897-1901. doi: 10.1007/s00705-019-04245-6. Epub 2019 Apr 10.

PMID: 30972592