| Genus | Begomovirus | 
|---|---|
| NCBI Assembly | GCF_000840485.1 | 
| Isolate | Jamaica | 
| Release date | 2015/2/12 | 
| Submitter | Stewart,C.S., Kon,T., Gilbertson,R.L., Roye,M.E., Gilbertson,B.L. | 
| Vector | |
| Download | Genome |GFF3 |PEP |CDS | 
            | NCBI Accession | YP_004064949.1 | 
|---|---|
| Location | 374-1150 | 
| Gene Name | NSP | 
| Protein Name | nuclear shuttle protein | 
| Coding Region | ATGAATATGTATCCTTTTAGGAATAAACGTGGGTCCTCATTCACTCAACGTCGTTATTATCCACGCAATACTGTGTTTAACCGTTTAACCGCCTCTAAGAGACATGATGTGAAACTACGACTGGGTCATATGAACAAGCCCACTGACGAGCCCAAGATGTCAGCCCAACGCATACATGAGAATCAATATAGTCCAGAGTTTGTTATGTCACAAAACTCCGCCATATCAACCTTTATCAGCTATCCTAATCTGGGTAAGACAGAACCCAATCGAAGCAGGTCTTATATAAAGTTGAAACGACTCCGTTTCAGAGGGACTGTGAAGATTGAGCGTGTTCAATCGGATGTGAATATGGATGGTTCTGTTCCTAAATTAGAAGGAGTTTTTTCTATCGTTGTAGTCGTGGATCGTAAACCCCACTTGGGTCCGACTGGTAGTCTTCATACATTCGACGAACTATTTGGTGCAATGATCCATAGTCATGGTAATCTTAGCATAACCCCGTCTCTGAAAGATCGGTTCTATATTCGACACGTGTTCAAACGTGTGATATCTGTTGATAAGGATACGACAATGTTTGACGTGGGAGGGTCTACTACGCTCTCTAATAGGCGATTCAATTGTTGGGCATCGTTTAAGGATTTTGATTGTGACTCAAGCAAGGGTGTATATGACAATATCAGCAAGAACGCTCTATTAGTTTATTATTGTTGGATGTCAGATACTATGTCTAAGGCATCGAATTTTGTATCGTTTGAACTCGATTATATCGGATGA | 
| Protein Sequence | MNMYPFRNKRGSSFTQRRYYPRNTVFNRLTASKRHDVKLRLGHMNKPTDEPKMSAQRIHENQYSPEFVMSQNSAISTFISYPNLGKTEPNRSRSYIKLKRLRFRGTVKIERVQSDVNMDGSVPKLEGVFSIVVVVDRKPHLGPTGSLHTFDELFGAMIHSHGNLSITPSLKDRFYIRHVFKRVISVDKDTTMFDVGGSTTLSNRRFNCWASFKDFDCDSSKGVYDNISKNALLVYYCWMSDTMSKASNFVSFELDYIG | 
| NCBI Accession | YP_004064944.1 | 
|---|---|
| Location | 183-938 | 
| Gene Name | CP | 
| Protein Name | coat protein | 
| Coding Region | ATGACTAAGCGCGATTCATCTTGGCGCTCGATTGGTGGAACCTCAAAGGTTCGTCGCACGTTGAATTTCTCCCCACGTGGAGGTGGTGGCCCAAAACAGACACGGGCCTCAGAATGGGTTAACAGGCCTATGTACAGGAAGCCCTTGATCTATCGGACTATACGAACGCCCGACGTTCCCAGAGGTTGTGAAGGCCCGTGCAAGGTCCAGTCCTATGAACAGCGTCATGATATCTCTCACGTCGGGAAGGTGATGTGTATTTCTGATGTCACTCGTGGTAATGGTATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTCTATATTTTAGGGAAGATATGGATGGATGAGAACATCAAGCTTAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGACCGTCGACCCTATGGCACTCCTATGGATTTCGGTCAGGTGTTCAACATGTATGACAATGAGCCTAGTACAGCTACGATCAAGAACGATCTCCGTGATCGTCATCAGGTTATGCACAGGTTCTATGGTAAGGTCACAGGTGGTCAATATGCCAGCAACGAGCAAGCTTTGGTTAGGCGATTCTGGAAGGTCAACAATCATGTAGAGTACAACCATCAAGAAGCTGGGAAATACGAGAATCATACGGAGAACGCCTTATTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCGACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA | 
| Protein Sequence | MTKRDSSWRSIGGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMYRKPLIYRTIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATIKNDLRDRHQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVEYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN | 
| NCBI Accession | YP_004064945.1 | 
|---|---|
| Location | 935-1333 | 
| Gene Name | REn | 
| Protein Name | replication enhancer | 
| Coding Region | ATGGTTTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATATACTGGGTAGAGGACCAGATATACACCAGAACCAGAGTGTACCACATACAGATACGATTCAACCACAACCTGAGGAGAGCGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTTTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGCTAGATTTGGACAATTAGTAAATGAGTACTTGTACCAATTAGGTGTAATTGGAATAAACAATGTAATTAGAGCTGTTCGTTTTGCAACAGCCAAACCATATGTAACTCATGTGCTTGAAAATCATGAAATAAAATTTAAATTTTATTAA | 
| Protein Sequence | MVSRTGELITARQAENGVYIWEIENPLYFKIYWVEDQIYTRTRVYHIQIRFNHNLRRALGLHKAYLNFQVWTTSMTASGSTYLARFGQLVNEYLYQLGVIGINNVIRAVRFATAKPYVTHVLENHEIKFKFY | 
| NCBI Accession | YP_004064946.1 | 
|---|---|
| Location | 1080-1469 | 
| Gene Name | TrAP | 
| Protein Name | transcriptional activator protein | 
| Coding Region | ATGCCAAATTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAATCCAAGAGGCGGGCAATCAGGAGGCGCAGGATTGATCTAAATTGCGGGTGCTCCATTTACTTCCACATCAACTGCACGGGACATGGTTTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATATACTGGGTAGAGGACCAGATATACACCAGAACCAGAGTGTACCACATACAGATACGATTCAACCACAACCTGAGGAGAGCGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTTTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGCTAG | 
| Protein Sequence | MPNSSPSQPPSIKKAHRQSKRRAIRRRRIDLNCGCSIYFHINCTGHGFTHRGTHHCTSGREWRVYLGDRKSPLFQDILGRGPDIHQNQSVPHTDTIQPQPEESVGSPQSLPELPSLDDIDDSFWVNLFS | 
| NCBI Accession | YP_004064947.1 | 
|---|---|
| Location | 1381-2466 | 
| Gene Name | Rep | 
| Protein Name | replication-associated protein | 
| Coding Region | ATGCCATCGATTAAACGTTTCAAAATAAATGCCAAAAACTATTTTATCACTTATCCAGGCTGCTCCCTCACCAAAGAAGAGGCACTTTCCCAATTGCTAAACCTCTCCACGCCAGTGAATAAGAAGTTCATCAAAATTTGCAGAGAGCTCCATCAAAATGGGAAGCCTCATCTCCATGTGCCCATGCAATTCGAGGGAAAATATGCATGCAAGAATAACAGATTCTTCGATCTGGCCTCCCCAACCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCAAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCAGTCTGCTAATGATTCATATGCCAAGGCGTTAAATGCAGATTCCGTTGAATCTGCCATGGCGGTTTTAAAAGAAGAACAGCCAAAAGATTTCGTTTTGCAGAATCATAACATCCGTGCCAACTTAGAAAGGATATTCGCTAAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCCCTCTCCTCTTTCAATGCCGTTCCAGACGAGATGCAAGCATGGTCAGACGGTTATTTTGGAACAGATGCCGCTGCGCGGCCGGAGAGGCCTGTGAGTATCATAATTGAAGGCGACTCGAGGACAGGGAAGACGATGTGGGCTCGTGCCTTAGGCCCACACAATTATCTCAGTGGACACTTAGACTTCAATTCCCGGGTCTTTTCAAATGAAGTGGAATATAACGTCATTGATGACGTCGCACCGCAATATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTGAACAAAGAGGAAAACACAGGTCTCAGGAACTGGACCATCAAGAATGCCAAATTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAATCCAAGAGGCGGGCAATCAGGAGGCGCAGGATTGA | 
| Protein Sequence | MPSIKRFKINAKNYFITYPGCSLTKEEALSQLLNLSTPVNKKFIKICRELHQNGKPHLHVPMQFEGKYACKNNRFFDLASPTRSAHFHPNIQGAKSSSDVKSYIAKDGDTLEWGEFQIDGRSARGGCQSANDSYAKALNADSVESAMAVLKEEQPKDFVLQNHNIRANLERIFAKAPEPWSPPFPLSSFNAVPDEMQAWSDGYFGTDAAARPERPVSIIIEGDSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEVEYNVIDDVAPQYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENTGLRNWTIKNAKFITLTAPLYQEGTQAIQEAGNQEAQD | 
| NCBI Accession | YP_004064948.1 | 
|---|---|
| Location | 2052-2309 | 
| Gene Name | AC4 | 
| Protein Name | AC4 | 
| Coding Region | ATGGGAAGCCTCATCTCCATGTGCCCATGCAATTCGAGGGAAAATATGCATGCAAGAATAACAGATTCTTCGATCTGGCCTCCCCAACCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCAAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCAGTCTGCTAATGATTCATATGCCAAGGCGTTAA | 
| Protein Sequence | MGSLISMCPCNSRENMHARITDSSIWPPQPGQHISIQTYRELNPAPTSSPTSQRTEIHWNGENSRSTAEVLEEAASLLMIHMPRR | 
| 1 | 
                             First report of the complete sequence of Sida golden yellow vein virus from Jamaica. Stewart CS, et al. Arch Virol. 2011 Aug;156(8):1481-4. doi: 10.1007/s00705-011-1030-z. Epub 2011 May 29. PMID: 21625977  | 
                    
|---|---|
| 2 | 
                            
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| 3 | 
                            
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| 5 | 
                             Complete sequence of a new bipartite begomovirus infecting Sida sp. in Northeastern Brazil. Macedo MA, et al. Arch Virol. 2020 Jan;165(1):253-256. doi: 10.1007/s00705-019-04458-9. Epub 2019 Nov 22. PMID: 31758274  | 
                    
| 6 | 
                            
                             Stewart C, et al. Arch Virol. 2014 Sep;159(9):2509-12. doi: 10.1007/s00705-014-2063-x. Epub 2014 Apr 1. PMID: 24687859  | 
                    
| 7 | 
                            
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| 9 | 
                            
                             Frischmuth T, et al. J Gen Virol. 1997 Oct;78 ( Pt 10):2675-82. doi: 10.1099/0022-1317-78-10-2675. PMID: 9349490  |