Genus | Begomovirus |
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NCBI Assembly | GCF_000840485.1 |
Isolate | Jamaica |
Release date | 2015/2/12 |
Submitter | Stewart,C.S., Kon,T., Gilbertson,R.L., Roye,M.E., Gilbertson,B.L. |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_004064949.1 |
---|---|
Location | 374-1150 |
Gene Name | NSP |
Protein Name | nuclear shuttle protein |
Coding Region | ATGAATATGTATCCTTTTAGGAATAAACGTGGGTCCTCATTCACTCAACGTCGTTATTATCCACGCAATACTGTGTTTAACCGTTTAACCGCCTCTAAGAGACATGATGTGAAACTACGACTGGGTCATATGAACAAGCCCACTGACGAGCCCAAGATGTCAGCCCAACGCATACATGAGAATCAATATAGTCCAGAGTTTGTTATGTCACAAAACTCCGCCATATCAACCTTTATCAGCTATCCTAATCTGGGTAAGACAGAACCCAATCGAAGCAGGTCTTATATAAAGTTGAAACGACTCCGTTTCAGAGGGACTGTGAAGATTGAGCGTGTTCAATCGGATGTGAATATGGATGGTTCTGTTCCTAAATTAGAAGGAGTTTTTTCTATCGTTGTAGTCGTGGATCGTAAACCCCACTTGGGTCCGACTGGTAGTCTTCATACATTCGACGAACTATTTGGTGCAATGATCCATAGTCATGGTAATCTTAGCATAACCCCGTCTCTGAAAGATCGGTTCTATATTCGACACGTGTTCAAACGTGTGATATCTGTTGATAAGGATACGACAATGTTTGACGTGGGAGGGTCTACTACGCTCTCTAATAGGCGATTCAATTGTTGGGCATCGTTTAAGGATTTTGATTGTGACTCAAGCAAGGGTGTATATGACAATATCAGCAAGAACGCTCTATTAGTTTATTATTGTTGGATGTCAGATACTATGTCTAAGGCATCGAATTTTGTATCGTTTGAACTCGATTATATCGGATGA |
Protein Sequence | MNMYPFRNKRGSSFTQRRYYPRNTVFNRLTASKRHDVKLRLGHMNKPTDEPKMSAQRIHENQYSPEFVMSQNSAISTFISYPNLGKTEPNRSRSYIKLKRLRFRGTVKIERVQSDVNMDGSVPKLEGVFSIVVVVDRKPHLGPTGSLHTFDELFGAMIHSHGNLSITPSLKDRFYIRHVFKRVISVDKDTTMFDVGGSTTLSNRRFNCWASFKDFDCDSSKGVYDNISKNALLVYYCWMSDTMSKASNFVSFELDYIG |
NCBI Accession | YP_004064944.1 |
---|---|
Location | 183-938 |
Gene Name | CP |
Protein Name | coat protein |
Coding Region | ATGACTAAGCGCGATTCATCTTGGCGCTCGATTGGTGGAACCTCAAAGGTTCGTCGCACGTTGAATTTCTCCCCACGTGGAGGTGGTGGCCCAAAACAGACACGGGCCTCAGAATGGGTTAACAGGCCTATGTACAGGAAGCCCTTGATCTATCGGACTATACGAACGCCCGACGTTCCCAGAGGTTGTGAAGGCCCGTGCAAGGTCCAGTCCTATGAACAGCGTCATGATATCTCTCACGTCGGGAAGGTGATGTGTATTTCTGATGTCACTCGTGGTAATGGTATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTCTATATTTTAGGGAAGATATGGATGGATGAGAACATCAAGCTTAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGACCGTCGACCCTATGGCACTCCTATGGATTTCGGTCAGGTGTTCAACATGTATGACAATGAGCCTAGTACAGCTACGATCAAGAACGATCTCCGTGATCGTCATCAGGTTATGCACAGGTTCTATGGTAAGGTCACAGGTGGTCAATATGCCAGCAACGAGCAAGCTTTGGTTAGGCGATTCTGGAAGGTCAACAATCATGTAGAGTACAACCATCAAGAAGCTGGGAAATACGAGAATCATACGGAGAACGCCTTATTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCGACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence | MTKRDSSWRSIGGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMYRKPLIYRTIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATIKNDLRDRHQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVEYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | YP_004064945.1 |
---|---|
Location | 935-1333 |
Gene Name | REn |
Protein Name | replication enhancer |
Coding Region | ATGGTTTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATATACTGGGTAGAGGACCAGATATACACCAGAACCAGAGTGTACCACATACAGATACGATTCAACCACAACCTGAGGAGAGCGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTTTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGCTAGATTTGGACAATTAGTAAATGAGTACTTGTACCAATTAGGTGTAATTGGAATAAACAATGTAATTAGAGCTGTTCGTTTTGCAACAGCCAAACCATATGTAACTCATGTGCTTGAAAATCATGAAATAAAATTTAAATTTTATTAA |
Protein Sequence | MVSRTGELITARQAENGVYIWEIENPLYFKIYWVEDQIYTRTRVYHIQIRFNHNLRRALGLHKAYLNFQVWTTSMTASGSTYLARFGQLVNEYLYQLGVIGINNVIRAVRFATAKPYVTHVLENHEIKFKFY |
NCBI Accession | YP_004064946.1 |
---|---|
Location | 1080-1469 |
Gene Name | TrAP |
Protein Name | transcriptional activator protein |
Coding Region | ATGCCAAATTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAATCCAAGAGGCGGGCAATCAGGAGGCGCAGGATTGATCTAAATTGCGGGTGCTCCATTTACTTCCACATCAACTGCACGGGACATGGTTTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATATACTGGGTAGAGGACCAGATATACACCAGAACCAGAGTGTACCACATACAGATACGATTCAACCACAACCTGAGGAGAGCGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTTTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGCTAG |
Protein Sequence | MPNSSPSQPPSIKKAHRQSKRRAIRRRRIDLNCGCSIYFHINCTGHGFTHRGTHHCTSGREWRVYLGDRKSPLFQDILGRGPDIHQNQSVPHTDTIQPQPEESVGSPQSLPELPSLDDIDDSFWVNLFS |
NCBI Accession | YP_004064947.1 |
---|---|
Location | 1381-2466 |
Gene Name | Rep |
Protein Name | replication-associated protein |
Coding Region | ATGCCATCGATTAAACGTTTCAAAATAAATGCCAAAAACTATTTTATCACTTATCCAGGCTGCTCCCTCACCAAAGAAGAGGCACTTTCCCAATTGCTAAACCTCTCCACGCCAGTGAATAAGAAGTTCATCAAAATTTGCAGAGAGCTCCATCAAAATGGGAAGCCTCATCTCCATGTGCCCATGCAATTCGAGGGAAAATATGCATGCAAGAATAACAGATTCTTCGATCTGGCCTCCCCAACCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCAAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCAGTCTGCTAATGATTCATATGCCAAGGCGTTAAATGCAGATTCCGTTGAATCTGCCATGGCGGTTTTAAAAGAAGAACAGCCAAAAGATTTCGTTTTGCAGAATCATAACATCCGTGCCAACTTAGAAAGGATATTCGCTAAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCCCTCTCCTCTTTCAATGCCGTTCCAGACGAGATGCAAGCATGGTCAGACGGTTATTTTGGAACAGATGCCGCTGCGCGGCCGGAGAGGCCTGTGAGTATCATAATTGAAGGCGACTCGAGGACAGGGAAGACGATGTGGGCTCGTGCCTTAGGCCCACACAATTATCTCAGTGGACACTTAGACTTCAATTCCCGGGTCTTTTCAAATGAAGTGGAATATAACGTCATTGATGACGTCGCACCGCAATATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTGAACAAAGAGGAAAACACAGGTCTCAGGAACTGGACCATCAAGAATGCCAAATTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAATCCAAGAGGCGGGCAATCAGGAGGCGCAGGATTGA |
Protein Sequence | MPSIKRFKINAKNYFITYPGCSLTKEEALSQLLNLSTPVNKKFIKICRELHQNGKPHLHVPMQFEGKYACKNNRFFDLASPTRSAHFHPNIQGAKSSSDVKSYIAKDGDTLEWGEFQIDGRSARGGCQSANDSYAKALNADSVESAMAVLKEEQPKDFVLQNHNIRANLERIFAKAPEPWSPPFPLSSFNAVPDEMQAWSDGYFGTDAAARPERPVSIIIEGDSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEVEYNVIDDVAPQYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENTGLRNWTIKNAKFITLTAPLYQEGTQAIQEAGNQEAQD |
NCBI Accession | YP_004064948.1 |
---|---|
Location | 2052-2309 |
Gene Name | AC4 |
Protein Name | AC4 |
Coding Region | ATGGGAAGCCTCATCTCCATGTGCCCATGCAATTCGAGGGAAAATATGCATGCAAGAATAACAGATTCTTCGATCTGGCCTCCCCAACCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCAAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCAGTCTGCTAATGATTCATATGCCAAGGCGTTAA |
Protein Sequence | MGSLISMCPCNSRENMHARITDSSIWPPQPGQHISIQTYRELNPAPTSSPTSQRTEIHWNGENSRSTAEVLEEAASLLMIHMPRR |
1 |
De La Torre-Almaraz R, et al. Plant Dis. 2006 Mar;90(3):378. doi: 10.1094/PD-90-0378B. PMID: 30786574 |
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2 |
First report of the complete sequence of Sida golden yellow vein virus from Jamaica. Stewart CS, et al. Arch Virol. 2011 Aug;156(8):1481-4. doi: 10.1007/s00705-011-1030-z. Epub 2011 May 29. PMID: 21625977 |
3 |
Bornancini VA, et al. Viruses. 2020 Feb 11;12(2):202. doi: 10.3390/v12020202. PMID: 32054104 |
4 |
Stewart C, et al. Arch Virol. 2014 Sep;159(9):2509-12. doi: 10.1007/s00705-014-2063-x. Epub 2014 Apr 1. PMID: 24687859 |
5 |
Complete sequence of a new bipartite begomovirus infecting Sida sp. in Northeastern Brazil. Macedo MA, et al. Arch Virol. 2020 Jan;165(1):253-256. doi: 10.1007/s00705-019-04458-9. Epub 2019 Nov 22. PMID: 31758274 |
6 |
Fiallo-Olivé E, et al. Arch Virol. 2012 Jan;157(1):141-6. doi: 10.1007/s00705-011-1123-8. Epub 2011 Oct 1. PMID: 21964921 |
7 |
Domínguez M, et al. Plant Dis. 2002 Sep;86(9):1050. doi: 10.1094/PDIS.2002.86.9.1050A. PMID: 30818540 |
8 |
Ferro CG, et al. Microorganisms. 2021 May 10;9(5):1018. doi: 10.3390/microorganisms9051018. PMID: 34068583 |
9 |
Frischmuth T, et al. J Gen Virol. 1997 Oct;78 ( Pt 10):2675-82. doi: 10.1099/0022-1317-78-10-2675. PMID: 9349490 |