Sida golden yellow spot virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_003029415.1
Isolate Brazil
Release date 2018/8/26
Submitter Ferro,C.G., Silva,J.P., Xavier,C.A.D., Godinho,M.T., Lima,A.T.M., Mar,T.B., Lau,D., Zerbini,F.M.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038992
ACCGGATGGCCGCGCGATTTTTTGACCCCCGACCCGCTTCCGCATTTCTCGCCGCTTTGTCGGCCGCAATAATGACATGTGGGTCCTCTGAAGGATACGTGTATCAATGAGAAACACGCCTCAAAGCTTAGTTCTTTTGTAACAACTTGTTGCCTAAGTAGTTATAAATTGGGCCTAGGCCCAATATAATATTTGCACATGGATCAGTTATTTTGTCAGTTAGAAGGTAACAAGATAGAGCCCAAAGATCTGTTACCTGCTGTGAGTCGCTGGATCGTAGAGAAGGGAACGGCCCAGCAATTCATTGACTGGATCAATGGACTTCAGGCGGAAACGAAAGGCCTCTTTCACGCCCTTAACGCCGTACCAGATGGCGAAGAGATTCAGACAGATTCAGCAGAGGTCGACGGCGAGGAGGAGACTGAACTTCGGTTATCCCAGCCCGTACGCATCTCAGGTACCGGTAAAGAGCAGGGGTCTTACAGACAGATTCCGATTGACTAATGCCTGTAATTGCTATGGTGGTCCAACATACAAGAATAATCAGGGTCAGATGATATTGTTGCCTGCTCGCGGTCAGGGTGTTGATCAGAGGAGGGGTTCTACAATTAAAGTGTGGAGTATTAATATCAAATCTGTATGGTCTTTCACGATGCCCTCTAGTGGTAGTGGGGGTGATCTGGGAAATGTATTCTTCAGGTGGGTAATTCTTGTGGATAGGACGCCTGGGAAAGACGTTCCTTCGTGGTCCGATGTGTATCAGACGCCCAGCATTGACAGTGACACGCAGACCATGATTAACTGTCATATGAAGCAGGACTCGCTGGGCCGTTTCCAGATATTGTCCGATGTGAAGAGGTCCATGCAGCCCTTCCAAAAAGATACACATAGCAGGGATCATGTTCTTGTGGATTTGGACCTGAGGCCCAGGATGAGGAAAATGGGCCAGTATTCCGGATCGAAGAATATGAGGCCCATATTGGTAGACTATCACGCAAACAACACCTCTAACGCCTGGACCGATATTAAGAAGAATGGCCTGTTTATGTTGGCCATGGCCCATTGTGATGTAGATGGGTCATTTGTATTGGGTTCTTGTGATGTATCCGTTACTGGCTATTCATAAATATTATTTGAATTTTATATATTAATATAATTTGAATTTTATATCATGAAATTCAATTACATGATGTACATATTTCTTATCCGTTGCATTTGATACTGCACGGATTACATTGTTAATTGAAATTACCCCTAATTGTTCTAAATACATTAAAACTAAATGTTTAAATCTAGCAAAATAAGTTGTCCCAGAAGCTCGAATCGATGTCGTCCAGACTTGGAAGTTGAGAAAGGCTTTGTGGAGACCCAGTGCTCTCCTCAGGTTGTGGTTGAATCGGATTTGGACGTGGTAGATTGTTGTCTTGGTGTACGGTGGGTGTTCTACATGGTATATCTTGAAATACAGGGGATTTGTTATCTCCCAGATATATACGCCATTCTCTGCCTGAGGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTTACTGCACTTGAGATGGACGTATATCGAGCACCCGCAGCTAATGTCAATCCTTTTACGGCGATTGGCTCTCCTTTTCGCTGCTCTGTGCGTTGGCTTGATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCACGCTCTTAGGGATGCATTTTCCTCTTTGTCGAGGTAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGTATACCGCCTTTAATTTGAACTGGCTTCCCGTATTTGCAGTTGGACTGCCAGTCCCTTTGGGCCCCGATGAGCTCTTTCCAGTGCTTTAACTTTAGGTATTGCGGAGTGATGTCATCCATGACGTTGTACTCCGCCTCATTGGAATAAACCCTAGAATTGAAATCTAGGTGTCCACTCAAATAGTTGTGGGACCCTAAAGACCTAGCCCACATTGTCTTCCCCGTCCTCGAATCACCTTCAATGATGATACTAACAGGTCTTTCCGGCCGCGCAGCGCGATCGACACCGAAATACTCATCAGCCCATTCCTGCATCTCCTCCGGTACGGCGTTAAAGGAGGAGAGGGGAAACGGAGGAGTCCATGGCTCCGGAGCCTTCTGAAAGATACGCTCTAGATTGGAGCGTATGTTGTGATGTTGAAGGACAAAGTCCTTTGGTTGTTCCTCCTTTAGAATTTGAAGTGCTTCTGTGATGGATGATGCATTTAGGACCTTGGCGTAAGACTCGTTAGCCGTCTGCTGACCTCCTCTAGCACTTCTTGCGTCGATCTGGAATTCTCCCCATTCGATGGTGTCTCCGTCCTTCTCGACGTAGGTCTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTACTGACCTGGTTGGGGAAACCAGGTCGAAGAATCGGCAATTCTGGGTTTTGAACTTGCCTTCGAATTGGATAAGCACGTGGAGATGAGGTTCCCCATTCTCGTGTAATTCTCTTGCTATCTTGATGAACTTCTTATTTGTGGGTGTTTGGATGTTTAGAATTTGGGAAAGTGTTTCCTCTTTAGTAAGGGAACACTGTGGATAAGTAAGGAAATAATTTTTAGCATTAATAAGGAATTTTCTGGGTTGGGATGGCATTCTCGTAAATAAGCTAGGTATACCCAAATGGTTGCTCTGCTAAAGTCTTATGGAATTGGGTATATTGGGTCCTTATTTATAGTAGACCTCTAACTCCCAGAGGGGCACGTGGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009508428.1
Location 199-504
Protein Name AV2 protein
Coding Region ATGGATCAGTTATTTTGTCAGTTAGAAGGTAACAAGATAGAGCCCAAAGATCTGTTACCTGCTGTGAGTCGCTGGATCGTAGAGAAGGGAACGGCCCAGCAATTCATTGACTGGATCAATGGACTTCAGGCGGAAACGAAAGGCCTCTTTCACGCCCTTAACGCCGTACCAGATGGCGAAGAGATTCAGACAGATTCAGCAGAGGTCGACGGCGAGGAGGAGACTGAACTTCGGTTATCCCAGCCCGTACGCATCTCAGGTACCGGTAAAGAGCAGGGGTCTTACAGACAGATTCCGATTGACTAA
Protein Sequence MDQLFCQLEGNKIEPKDLLPAVSRWIVEKGTAQQFIDWINGLQAETKGLFHALNAVPDGEEIQTDSAEVDGEEETELRLSQPVRISGTGKEQGSYRQIPID

NCBI Accession YP_009508429.1
Location 317-1126
Protein Name CP
Coding Region ATGGACTTCAGGCGGAAACGAAAGGCCTCTTTCACGCCCTTAACGCCGTACCAGATGGCGAAGAGATTCAGACAGATTCAGCAGAGGTCGACGGCGAGGAGGAGACTGAACTTCGGTTATCCCAGCCCGTACGCATCTCAGGTACCGGTAAAGAGCAGGGGTCTTACAGACAGATTCCGATTGACTAATGCCTGTAATTGCTATGGTGGTCCAACATACAAGAATAATCAGGGTCAGATGATATTGTTGCCTGCTCGCGGTCAGGGTGTTGATCAGAGGAGGGGTTCTACAATTAAAGTGTGGAGTATTAATATCAAATCTGTATGGTCTTTCACGATGCCCTCTAGTGGTAGTGGGGGTGATCTGGGAAATGTATTCTTCAGGTGGGTAATTCTTGTGGATAGGACGCCTGGGAAAGACGTTCCTTCGTGGTCCGATGTGTATCAGACGCCCAGCATTGACAGTGACACGCAGACCATGATTAACTGTCATATGAAGCAGGACTCGCTGGGCCGTTTCCAGATATTGTCCGATGTGAAGAGGTCCATGCAGCCCTTCCAAAAAGATACACATAGCAGGGATCATGTTCTTGTGGATTTGGACCTGAGGCCCAGGATGAGGAAAATGGGCCAGTATTCCGGATCGAAGAATATGAGGCCCATATTGGTAGACTATCACGCAAACAACACCTCTAACGCCTGGACCGATATTAAGAAGAATGGCCTGTTTATGTTGGCCATGGCCCATTGTGATGTAGATGGGTCATTTGTATTGGGTTCTTGTGATGTATCCGTTACTGGCTATTCATAA
Protein Sequence MDFRRKRKASFTPLTPYQMAKRFRQIQQRSTARRRLNFGYPSPYASQVPVKSRGLTDRFRLTNACNCYGGPTYKNNQGQMILLPARGQGVDQRRGSTIKVWSINIKSVWSFTMPSSGSGGDLGNVFFRWVILVDRTPGKDVPSWSDVYQTPSIDSDTQTMINCHMKQDSLGRFQILSDVKRSMQPFQKDTHSRDHVLVDLDLRPRMRKMGQYSGSKNMRPILVDYHANNTSNAWTDIKKNGLFMLAMAHCDVDGSFVLGSCDVSVTGYS

NCBI Accession YP_009508430.1
Location 1148-1546
Protein Name REN
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCGCCTCAGGCAGAGAATGGCGTATATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCATGTAGAACACCCACCGTACACCAAGACAACAATCTACCACGTCCAAATCCGATTCAACCACAACCTGAGGAGAGCACTGGGTCTCCACAAAGCCTTTCTCAACTTCCAAGTCTGGACGACATCGATTCGAGCTTCTGGGACAACTTATTTTGCTAGATTTAAACATTTAGTTTTAATGTATTTAGAACAATTAGGGGTAATTTCAATTAACAATGTAATCCGTGCAGTATCAAATGCAACGGATAAGAAATATGTACATCATGTAATTGAATTTCATGATATAAAATTCAAATTATATTAA
Protein Sequence MDSRTGELITAPQAENGVYIWEITNPLYFKIYHVEHPPYTKTTIYHVQIRFNHNLRRALGLHKAFLNFQVWTTSIRASGTTYFARFKHLVLMYLEQLGVISINNVIRAVSNATDKKYVHHVIEFHDIKFKLY

NCBI Accession YP_009508431.1
Location 1293-1682
Protein Name TRAP
Coding Region ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAGCCAACGCACAGAGCAGCGAAAAGGAGAGCCAATCGCCGTAAAAGGATTGACATTAGCTGCGGGTGCTCGATATACGTCCATCTCAAGTGCAGTAACAATGGATTCACGCACAGGGGAACTCATCACTGCGCCTCAGGCAGAGAATGGCGTATATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCATGTAGAACACCCACCGTACACCAAGACAACAATCTACCACGTCCAAATCCGATTCAACCACAACCTGAGGAGAGCACTGGGTCTCCACAAAGCCTTTCTCAACTTCCAAGTCTGGACGACATCGATTCGAGCTTCTGGGACAACTTATTTTGCTAG
Protein Sequence MLNSSSSTPPSIKPTHRAAKRRANRRKRIDISCGCSIYVHLKCSNNGFTHRGTHHCASGREWRIYLGDNKSPVFQDIPCRTPTVHQDNNLPRPNPIQPQPEESTGSPQSLSQLPSLDDIDSSFWDNLFC

NCBI Accession YP_009508432.1
Location 1603-2682
Protein Name Rep
Coding Region ATGCCATCCCAACCCAGAAAATTCCTTATTAATGCTAAAAATTATTTCCTTACTTATCCACAGTGTTCCCTTACTAAAGAGGAAACACTTTCCCAAATTCTAAACATCCAAACACCCACAAATAAGAAGTTCATCAAGATAGCAAGAGAATTACACGAGAATGGGGAACCTCATCTCCACGTGCTTATCCAATTCGAAGGCAAGTTCAAAACCCAGAATTGCCGATTCTTCGACCTGGTTTCCCCAACCAGGTCAGTACATTTCCATCCAAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGACCTACGTCGAGAAGGACGGAGACACCATCGAATGGGGAGAATTCCAGATCGACGCAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGAGTCTTACGCCAAGGTCCTAAATGCATCATCCATCACAGAAGCACTTCAAATTCTAAAGGAGGAACAACCAAAGGACTTTGTCCTTCAACATCACAACATACGCTCCAATCTAGAGCGTATCTTTCAGAAGGCTCCGGAGCCATGGACTCCTCCGTTTCCCCTCTCCTCCTTTAACGCCGTACCGGAGGAGATGCAGGAATGGGCTGATGAGTATTTCGGTGTCGATCGCGCTGCGCGGCCGGAAAGACCTGTTAGTATCATCATTGAAGGTGATTCGAGGACGGGGAAGACAATGTGGGCTAGGTCTTTAGGGTCCCACAACTATTTGAGTGGACACCTAGATTTCAATTCTAGGGTTTATTCCAATGAGGCGGAGTACAACGTCATGGATGACATCACTCCGCAATACCTAAAGTTAAAGCACTGGAAAGAGCTCATCGGGGCCCAAAGGGACTGGCAGTCCAACTGCAAATACGGGAAGCCAGTTCAAATTAAAGGCGGTATACCATCAATCGTGCTCTGCAATCCAGGAGAGGGGGCCAGCTATAAAGATTACCTCGACAAAGAGGAAAATGCATCCCTAAGAGCGTGGACACTCCACAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAGCCAACGCACAGAGCAGCGAAAAGGAGAGCCAATCGCCGTAA
Protein Sequence MPSQPRKFLINAKNYFLTYPQCSLTKEETLSQILNIQTPTNKKFIKIARELHENGEPHLHVLIQFEGKFKTQNCRFFDLVSPTRSVHFHPNIQGAKSSSDVKTYVEKDGDTIEWGEFQIDARSARGGQQTANESYAKVLNASSITEALQILKEEQPKDFVLQHHNIRSNLERIFQKAPEPWTPPFPLSSFNAVPEEMQEWADEYFGVDRAARPERPVSIIIEGDSRTGKTMWARSLGSHNYLSGHLDFNSRVYSNEAEYNVMDDITPQYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDYLDKEENASLRAWTLHNAKFIFLDSPLYQANAQSSEKESQSP

NCBI Accession YP_009508433.1
Location 2265-2522
Protein Name AC4 protein
Coding Region ATGGGGAACCTCATCTCCACGTGCTTATCCAATTCGAAGGCAAGTTCAAAACCCAGAATTGCCGATTCTTCGACCTGGTTTCCCCAACCAGGTCAGTACATTTCCATCCAAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGACCTACGTCGAGAAGGACGGAGACACCATCGAATGGGGAGAATTCCAGATCGACGCAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGAGTCTTACGCCAAGGTCCTAA
Protein Sequence MGNLISTCLSNSKASSKPRIADSSTWFPQPGQYISIQTFRELNQAQTSRPTSRRTETPSNGENSRSTQEVLEEVSRRLTSLTPRS

References More References in PubMed

1

Characterization of sida golden mottle virus isolated from Sida santaremensis Monteiro in Florida.

Al-Aqeel HA, et al.  Arch Virol. 2018 Oct;163(10):2907-2911. doi: 10.1007/s00705-018-3903-x. Epub 2018 Jun 21.

PMID: 29931396
2

Tomato yellow spot virus, a tomato-infecting begomovirus from Brazil with a closer relationship to viruses from Sida sp., forms pseudorecombinants with begomoviruses from tomato but not from Sida.

Andrade EC, et al.  J Gen Virol. 2006 Dec;87(Pt 12):3687-3696. doi: 10.1099/vir.0.82279-0.

PMID: 17098986
3

Reconstruction and Characterization of Full-Length Begomovirus and Alphasatellite Genomes Infecting Pepper through Metagenomics.

Bornancini VA, et al.  Viruses. 2020 Feb 11;12(2):202. doi: 10.3390/v12020202.

PMID: 32054104
4

Preliminary identification and coat protein gene phylogenetic relationships of begomoviruses associated with native flora and cultivated plants from the Yucatan Peninsula of Mexico.

Hernández-Zepeda C, et al.  Virus Genes. 2007 Dec;35(3):825-33. doi: 10.1007/s11262-007-0149-1. Epub 2007 Aug 8.

PMID: 17682933
5

Begomoviruses infecting weeds in Cuba: increased host range and a novel virus infecting Sida rhombifolia.

Fiallo-Olivé E, et al.  Arch Virol. 2012 Jan;157(1):141-6. doi: 10.1007/s00705-011-1123-8. Epub 2011 Oct 1.

PMID: 21964921