Sida golden yellow spot virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_003029415.1 |
| Isolate |
Brazil |
| Release date |
2018/8/26 |
| Submitter |
Ferro,C.G., Silva,J.P., Xavier,C.A.D., Godinho,M.T., Lima,A.T.M., Mar,T.B., Lau,D., Zerbini,F.M. |
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTGACCCCCGACCCGCTTCCGCATTTCTCGCCGCTTTGTCGGCCGCAATAATGACATGTGGGTCCTCTGAAGGATACGTGTATCAATGAGAAACACGCCTCAAAGCTTAGTTCTTTTGTAACAACTTGTTGCCTAAGTAGTTATAAATTGGGCCTAGGCCCAATATAATATTTGCACATGGATCAGTTATTTTGTCAGTTAGAAGGTAACAAGATAGAGCCCAAAGATCTGTTACCTGCTGTGAGTCGCTGGATCGTAGAGAAGGGAACGGCCCAGCAATTCATTGACTGGATCAATGGACTTCAGGCGGAAACGAAAGGCCTCTTTCACGCCCTTAACGCCGTACCAGATGGCGAAGAGATTCAGACAGATTCAGCAGAGGTCGACGGCGAGGAGGAGACTGAACTTCGGTTATCCCAGCCCGTACGCATCTCAGGTACCGGTAAAGAGCAGGGGTCTTACAGACAGATTCCGATTGACTAATGCCTGTAATTGCTATGGTGGTCCAACATACAAGAATAATCAGGGTCAGATGATATTGTTGCCTGCTCGCGGTCAGGGTGTTGATCAGAGGAGGGGTTCTACAATTAAAGTGTGGAGTATTAATATCAAATCTGTATGGTCTTTCACGATGCCCTCTAGTGGTAGTGGGGGTGATCTGGGAAATGTATTCTTCAGGTGGGTAATTCTTGTGGATAGGACGCCTGGGAAAGACGTTCCTTCGTGGTCCGATGTGTATCAGACGCCCAGCATTGACAGTGACACGCAGACCATGATTAACTGTCATATGAAGCAGGACTCGCTGGGCCGTTTCCAGATATTGTCCGATGTGAAGAGGTCCATGCAGCCCTTCCAAAAAGATACACATAGCAGGGATCATGTTCTTGTGGATTTGGACCTGAGGCCCAGGATGAGGAAAATGGGCCAGTATTCCGGATCGAAGAATATGAGGCCCATATTGGTAGACTATCACGCAAACAACACCTCTAACGCCTGGACCGATATTAAGAAGAATGGCCTGTTTATGTTGGCCATGGCCCATTGTGATGTAGATGGGTCATTTGTATTGGGTTCTTGTGATGTATCCGTTACTGGCTATTCATAAATATTATTTGAATTTTATATATTAATATAATTTGAATTTTATATCATGAAATTCAATTACATGATGTACATATTTCTTATCCGTTGCATTTGATACTGCACGGATTACATTGTTAATTGAAATTACCCCTAATTGTTCTAAATACATTAAAACTAAATGTTTAAATCTAGCAAAATAAGTTGTCCCAGAAGCTCGAATCGATGTCGTCCAGACTTGGAAGTTGAGAAAGGCTTTGTGGAGACCCAGTGCTCTCCTCAGGTTGTGGTTGAATCGGATTTGGACGTGGTAGATTGTTGTCTTGGTGTACGGTGGGTGTTCTACATGGTATATCTTGAAATACAGGGGATTTGTTATCTCCCAGATATATACGCCATTCTCTGCCTGAGGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTTACTGCACTTGAGATGGACGTATATCGAGCACCCGCAGCTAATGTCAATCCTTTTACGGCGATTGGCTCTCCTTTTCGCTGCTCTGTGCGTTGGCTTGATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCACGCTCTTAGGGATGCATTTTCCTCTTTGTCGAGGTAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGTATACCGCCTTTAATTTGAACTGGCTTCCCGTATTTGCAGTTGGACTGCCAGTCCCTTTGGGCCCCGATGAGCTCTTTCCAGTGCTTTAACTTTAGGTATTGCGGAGTGATGTCATCCATGACGTTGTACTCCGCCTCATTGGAATAAACCCTAGAATTGAAATCTAGGTGTCCACTCAAATAGTTGTGGGACCCTAAAGACCTAGCCCACATTGTCTTCCCCGTCCTCGAATCACCTTCAATGATGATACTAACAGGTCTTTCCGGCCGCGCAGCGCGATCGACACCGAAATACTCATCAGCCCATTCCTGCATCTCCTCCGGTACGGCGTTAAAGGAGGAGAGGGGAAACGGAGGAGTCCATGGCTCCGGAGCCTTCTGAAAGATACGCTCTAGATTGGAGCGTATGTTGTGATGTTGAAGGACAAAGTCCTTTGGTTGTTCCTCCTTTAGAATTTGAAGTGCTTCTGTGATGGATGATGCATTTAGGACCTTGGCGTAAGACTCGTTAGCCGTCTGCTGACCTCCTCTAGCACTTCTTGCGTCGATCTGGAATTCTCCCCATTCGATGGTGTCTCCGTCCTTCTCGACGTAGGTCTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTACTGACCTGGTTGGGGAAACCAGGTCGAAGAATCGGCAATTCTGGGTTTTGAACTTGCCTTCGAATTGGATAAGCACGTGGAGATGAGGTTCCCCATTCTCGTGTAATTCTCTTGCTATCTTGATGAACTTCTTATTTGTGGGTGTTTGGATGTTTAGAATTTGGGAAAGTGTTTCCTCTTTAGTAAGGGAACACTGTGGATAAGTAAGGAAATAATTTTTAGCATTAATAAGGAATTTTCTGGGTTGGGATGGCATTCTCGTAAATAAGCTAGGTATACCCAAATGGTTGCTCTGCTAAAGTCTTATGGAATTGGGTATATTGGGTCCTTATTTATAGTAGACCTCTAACTCCCAGAGGGGCACGTGGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009508428.1
|
|
Location
|
199-504 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGGATCAGTTATTTTGTCAGTTAGAAGGTAACAAGATAGAGCCCAAAGATCTGTTACCTGCTGTGAGTCGCTGGATCGTAGAGAAGGGAACGGCCCAGCAATTCATTGACTGGATCAATGGACTTCAGGCGGAAACGAAAGGCCTCTTTCACGCCCTTAACGCCGTACCAGATGGCGAAGAGATTCAGACAGATTCAGCAGAGGTCGACGGCGAGGAGGAGACTGAACTTCGGTTATCCCAGCCCGTACGCATCTCAGGTACCGGTAAAGAGCAGGGGTCTTACAGACAGATTCCGATTGACTAA |
|
Protein Sequence
|
MDQLFCQLEGNKIEPKDLLPAVSRWIVEKGTAQQFIDWINGLQAETKGLFHALNAVPDGEEIQTDSAEVDGEEETELRLSQPVRISGTGKEQGSYRQIPID |
|
NCBI Accession
|
YP_009508429.1
|
|
Location
|
317-1126 |
|
Protein Name
|
CP |
|
Coding Region
|
ATGGACTTCAGGCGGAAACGAAAGGCCTCTTTCACGCCCTTAACGCCGTACCAGATGGCGAAGAGATTCAGACAGATTCAGCAGAGGTCGACGGCGAGGAGGAGACTGAACTTCGGTTATCCCAGCCCGTACGCATCTCAGGTACCGGTAAAGAGCAGGGGTCTTACAGACAGATTCCGATTGACTAATGCCTGTAATTGCTATGGTGGTCCAACATACAAGAATAATCAGGGTCAGATGATATTGTTGCCTGCTCGCGGTCAGGGTGTTGATCAGAGGAGGGGTTCTACAATTAAAGTGTGGAGTATTAATATCAAATCTGTATGGTCTTTCACGATGCCCTCTAGTGGTAGTGGGGGTGATCTGGGAAATGTATTCTTCAGGTGGGTAATTCTTGTGGATAGGACGCCTGGGAAAGACGTTCCTTCGTGGTCCGATGTGTATCAGACGCCCAGCATTGACAGTGACACGCAGACCATGATTAACTGTCATATGAAGCAGGACTCGCTGGGCCGTTTCCAGATATTGTCCGATGTGAAGAGGTCCATGCAGCCCTTCCAAAAAGATACACATAGCAGGGATCATGTTCTTGTGGATTTGGACCTGAGGCCCAGGATGAGGAAAATGGGCCAGTATTCCGGATCGAAGAATATGAGGCCCATATTGGTAGACTATCACGCAAACAACACCTCTAACGCCTGGACCGATATTAAGAAGAATGGCCTGTTTATGTTGGCCATGGCCCATTGTGATGTAGATGGGTCATTTGTATTGGGTTCTTGTGATGTATCCGTTACTGGCTATTCATAA |
|
Protein Sequence
|
MDFRRKRKASFTPLTPYQMAKRFRQIQQRSTARRRLNFGYPSPYASQVPVKSRGLTDRFRLTNACNCYGGPTYKNNQGQMILLPARGQGVDQRRGSTIKVWSINIKSVWSFTMPSSGSGGDLGNVFFRWVILVDRTPGKDVPSWSDVYQTPSIDSDTQTMINCHMKQDSLGRFQILSDVKRSMQPFQKDTHSRDHVLVDLDLRPRMRKMGQYSGSKNMRPILVDYHANNTSNAWTDIKKNGLFMLAMAHCDVDGSFVLGSCDVSVTGYS |
|
NCBI Accession
|
YP_009508430.1
|
|
Location
|
1148-1546 |
|
Protein Name
|
REN |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCGCCTCAGGCAGAGAATGGCGTATATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCATGTAGAACACCCACCGTACACCAAGACAACAATCTACCACGTCCAAATCCGATTCAACCACAACCTGAGGAGAGCACTGGGTCTCCACAAAGCCTTTCTCAACTTCCAAGTCTGGACGACATCGATTCGAGCTTCTGGGACAACTTATTTTGCTAGATTTAAACATTTAGTTTTAATGTATTTAGAACAATTAGGGGTAATTTCAATTAACAATGTAATCCGTGCAGTATCAAATGCAACGGATAAGAAATATGTACATCATGTAATTGAATTTCATGATATAAAATTCAAATTATATTAA |
|
Protein Sequence
|
MDSRTGELITAPQAENGVYIWEITNPLYFKIYHVEHPPYTKTTIYHVQIRFNHNLRRALGLHKAFLNFQVWTTSIRASGTTYFARFKHLVLMYLEQLGVISINNVIRAVSNATDKKYVHHVIEFHDIKFKLY |
|
NCBI Accession
|
YP_009508431.1
|
|
Location
|
1293-1682 |
|
Protein Name
|
TRAP |
|
Coding Region
|
ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAGCCAACGCACAGAGCAGCGAAAAGGAGAGCCAATCGCCGTAAAAGGATTGACATTAGCTGCGGGTGCTCGATATACGTCCATCTCAAGTGCAGTAACAATGGATTCACGCACAGGGGAACTCATCACTGCGCCTCAGGCAGAGAATGGCGTATATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCATGTAGAACACCCACCGTACACCAAGACAACAATCTACCACGTCCAAATCCGATTCAACCACAACCTGAGGAGAGCACTGGGTCTCCACAAAGCCTTTCTCAACTTCCAAGTCTGGACGACATCGATTCGAGCTTCTGGGACAACTTATTTTGCTAG |
|
Protein Sequence
|
MLNSSSSTPPSIKPTHRAAKRRANRRKRIDISCGCSIYVHLKCSNNGFTHRGTHHCASGREWRIYLGDNKSPVFQDIPCRTPTVHQDNNLPRPNPIQPQPEESTGSPQSLSQLPSLDDIDSSFWDNLFC |
|
NCBI Accession
|
YP_009508432.1
|
|
Location
|
1603-2682 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGCCATCCCAACCCAGAAAATTCCTTATTAATGCTAAAAATTATTTCCTTACTTATCCACAGTGTTCCCTTACTAAAGAGGAAACACTTTCCCAAATTCTAAACATCCAAACACCCACAAATAAGAAGTTCATCAAGATAGCAAGAGAATTACACGAGAATGGGGAACCTCATCTCCACGTGCTTATCCAATTCGAAGGCAAGTTCAAAACCCAGAATTGCCGATTCTTCGACCTGGTTTCCCCAACCAGGTCAGTACATTTCCATCCAAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGACCTACGTCGAGAAGGACGGAGACACCATCGAATGGGGAGAATTCCAGATCGACGCAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGAGTCTTACGCCAAGGTCCTAAATGCATCATCCATCACAGAAGCACTTCAAATTCTAAAGGAGGAACAACCAAAGGACTTTGTCCTTCAACATCACAACATACGCTCCAATCTAGAGCGTATCTTTCAGAAGGCTCCGGAGCCATGGACTCCTCCGTTTCCCCTCTCCTCCTTTAACGCCGTACCGGAGGAGATGCAGGAATGGGCTGATGAGTATTTCGGTGTCGATCGCGCTGCGCGGCCGGAAAGACCTGTTAGTATCATCATTGAAGGTGATTCGAGGACGGGGAAGACAATGTGGGCTAGGTCTTTAGGGTCCCACAACTATTTGAGTGGACACCTAGATTTCAATTCTAGGGTTTATTCCAATGAGGCGGAGTACAACGTCATGGATGACATCACTCCGCAATACCTAAAGTTAAAGCACTGGAAAGAGCTCATCGGGGCCCAAAGGGACTGGCAGTCCAACTGCAAATACGGGAAGCCAGTTCAAATTAAAGGCGGTATACCATCAATCGTGCTCTGCAATCCAGGAGAGGGGGCCAGCTATAAAGATTACCTCGACAAAGAGGAAAATGCATCCCTAAGAGCGTGGACACTCCACAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAGCCAACGCACAGAGCAGCGAAAAGGAGAGCCAATCGCCGTAA |
|
Protein Sequence
|
MPSQPRKFLINAKNYFLTYPQCSLTKEETLSQILNIQTPTNKKFIKIARELHENGEPHLHVLIQFEGKFKTQNCRFFDLVSPTRSVHFHPNIQGAKSSSDVKTYVEKDGDTIEWGEFQIDARSARGGQQTANESYAKVLNASSITEALQILKEEQPKDFVLQHHNIRSNLERIFQKAPEPWTPPFPLSSFNAVPEEMQEWADEYFGVDRAARPERPVSIIIEGDSRTGKTMWARSLGSHNYLSGHLDFNSRVYSNEAEYNVMDDITPQYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDYLDKEENASLRAWTLHNAKFIFLDSPLYQANAQSSEKESQSP |
|
NCBI Accession
|
YP_009508433.1
|
|
Location
|
2265-2522 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGGAACCTCATCTCCACGTGCTTATCCAATTCGAAGGCAAGTTCAAAACCCAGAATTGCCGATTCTTCGACCTGGTTTCCCCAACCAGGTCAGTACATTTCCATCCAAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGACCTACGTCGAGAAGGACGGAGACACCATCGAATGGGGAGAATTCCAGATCGACGCAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGAGTCTTACGCCAAGGTCCTAA |
|
Protein Sequence
|
MGNLISTCLSNSKASSKPRIADSSTWFPQPGQYISIQTFRELNQAQTSRPTSRRTETPSNGENSRSTQEVLEEVSRRLTSLTPRS |