Genus | Begomovirus |
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NCBI Assembly | GCF_000888515.1 |
Isolate | Cuba: Havana |
Release date | 2015/2/22 |
Submitter | Fiallo-Olive,E., Martinez-Zubiaur,Y., Moriones,E., Navas-Castillo,J. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_003856008.1 |
---|---|
Location | 182-937 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGTCTAAGCGCGATGGTTCCTGGCGCTCTATCGCGGGAATGTCAAAAGTGAAACGCACTATGAATTTCTCTCCTCGTGGAGGTGGTGGCCCAAAAATGACAAGGGCCGCTGAATGGGTTAACAGGCCTATGTACAGGAAGCCTAGGATTTATCGGACTCTGAGGACGCCTGATATTCCGAGAGGCTGTGAAGGCCCTTGCAAGGTGCAGTCTTATGAACAACGGCATGATATCTCACATGTCGGGAAGGTCATGTGTATTTCAGATGTGACACGTGGTAACGGCATTACTCATCGTGTTGGTAAGCGATTCTGTGTTAAGTCTGTGTATATTTTAGGTAAGGTATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTCGACCGTATGGCACTCCGATGGATTTCGGTCAGGTGTTCAACATGTTCGATAACGAGCCTAGCACTGCGACTGTGAAGAACGATCTCCGTGATCGTTATCAAGTCATGCACAAGTTCTATGCCAAGGTCACTGGTGGTCAATATGCCAGCAACGAGCAAGCTCTCGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTCTACAATCACCAGGAAGCTGGCAAGTACGAGAATCATACGGAGAATGCGTTACTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCGACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence | MSKRDGSWRSIAGMSKVKRTMNFSPRGGGGPKMTRAAEWVNRPMYRKPRIYRTLRTPDIPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | YP_003856009.1 |
---|---|
Location | 934-1332 |
Gene Name | AC3 |
Protein Name | replication enhancement protein |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATATACAGCGCAGAGGACCAGCTATACACCAGAACCAGAGTGTACCACATACAGATAAGATTCAACCACAACCTGAGGAAAGCGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGTTTCTGGGTTAACTTATTTAGCTAGATTTAGACATTTAGTTAACATGTACTTGTACCAATTAGGTGTAATTGGGATAAACAATGTAATTAGAGCTGTTAGATTTGCAACAGCCAAACCATATGTAAATTATGTGCTTGAGAATCATATAATAAAATATAAATGTTATTAA |
Protein Sequence | MDSRTGELITARQAENGVYIWEIENPLYFKIYSAEDQLYTRTRVYHIQIRFNHNLRKALGLHKAYLNFQVWTTSMTVSGLTYLARFRHLVNMYLYQLGVIGINNVIRAVRFATAKPYVNYVLENHIIKYKCY |
NCBI Accession | YP_003856010.1 |
---|---|
Location | 1079-1468 |
Gene Name | AC2 |
Protein Name | transactivator protein |
Coding Region | ATGCCATATTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAAGAGGCGGGCAATCAGGAGACGCAGGATTGATCTAGATTGCGGGTGCTCCATTTACTTCCACATCGGCTGCACGGGCCATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATATACAGCGCAGAGGACCAGCTATACACCAGAACCAGAGTGTACCACATACAGATAAGATTCAACCACAACCTGAGGAAAGCGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGTTTCTGGGTTAACTTATTTAGCTAG |
Protein Sequence | MPYSSPSQPPSIKKAHRQAKRRAIRRRRIDLDCGCSIYFHIGCTGHGFTHRGTHHCTSGREWRVYLGDRKSPLFQDIQRRGPAIHQNQSVPHTDKIQPQPEESVGSPQSLPELPSLDDIDDSFWVNLFS |
NCBI Accession | YP_003856011.1 |
---|---|
Location | 1380-2465 |
Gene Name | AC1 |
Protein Name | replication associated protein |
Coding Region | ATGCCATCAGTTAAACGTTTTAAAATAAATGCCAAAAACTATTTCATCACATATCCCGACTGCTCCCTGAGCAAAGAAGAAGCACTTTCTCAATTACAAAACCTGTCCACTCCTGTGAACAAGAAGTTCATCAAGATCTGCAGAGAGTTCCATCAGAATGGGAAGCCTCATCTCCACGTGCTTATACAATTCGAGGGGAAATATGCATGCACGAATTACAGATTCTTCGACCTGGTCTCACCATCCATGTCAGTCCCATTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATCAACAAGGACGGAGACACACTGGAATGGGGTGAATTCCAGATCGACGGGAGAAGTGCTAGAGGAGGCTGCCAATCGGTTAACGATACATATGCCAAGGCGTTGAATGCCTCTTCTGCAGAAGAGGCTCTGCAAATAATCAAGGAGGAACAGCCTCAACATTTCTTTCTTCAGCATCACAATCTGGTTGCCAATGCTCATCGGATTTTCAGTAAGGCTCCTGAGCCATGGGCTCCTCCGTTTCCCCTCTCTTCTTTCACAGCCGTTCCCGACGAGATGCAAGAATGGGCCGATGAGAATTTTGGAAGAGGTGCCGCTGCGCGGCCGGAGAGACCTATGAGTATCATAGTAGAAGGTGACTCGAGGACAGGGAAGACGATGTGGGCTCGTTCGTTAGGCCCACATAATTATCTTAGTGGACATCTGGACTTCAACCCTCGAGTATTTTCAAATGACGTGGAGTATAACGTCATTGATGACGTCGCACCGCAATATCTAAAGTTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAATCAAATTGCAAGTACGGCAAGCCAGTTCAAATTAAAGGCGGGATCCCAGCAATCGTGCTTTGCAATCCTGGTGAGGGTGCTAGCTATAAAGATTTCCTAGCCAAAGAGGAAAACACAGGTCTAAAGAATTGGACCAACAAGAATGCCATATTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAAGAGGCGGGCAATCAGGAGACGCAGGATTGA |
Protein Sequence | MPSVKRFKINAKNYFITYPDCSLSKEEALSQLQNLSTPVNKKFIKICREFHQNGKPHLHVLIQFEGKYACTNYRFFDLVSPSMSVPFHPNIQGAKSSSDVKSYINKDGDTLEWGEFQIDGRSARGGCQSVNDTYAKALNASSAEEALQIIKEEQPQHFFLQHHNLVANAHRIFSKAPEPWAPPFPLSSFTAVPDEMQEWADENFGRGAAARPERPMSIIVEGDSRTGKTMWARSLGPHNYLSGHLDFNPRVFSNDVEYNVIDDVAPQYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLAKEENTGLKNWTNKNAIFITLTAPLYQEGTQASQEAGNQETQD |
NCBI Accession | YP_003856012.1 |
---|---|
Location | 2051-2308 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGGGAAGCCTCATCTCCACGTGCTTATACAATTCGAGGGGAAATATGCATGCACGAATTACAGATTCTTCGACCTGGTCTCACCATCCATGTCAGTCCCATTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATCAACAAGGACGGAGACACACTGGAATGGGGTGAATTCCAGATCGACGGGAGAAGTGCTAGAGGAGGCTGCCAATCGGTTAACGATACATATGCCAAGGCGTTGA |
Protein Sequence | MGSLISTCLYNSRGNMHARITDSSTWSHHPCQSHSIQTYRELNPAPMSSPTSTRTETHWNGVNSRSTGEVLEEAANRLTIHMPRR |
NCBI Accession | YP_003856013.1 |
---|---|
Location | 385-1155 |
Gene Name | BV1 |
Protein Name | nuclear shutting protein |
Coding Region | ATGTATCCTTTTAGAAGTAAACGTGGTTATTGCTTTAGTCATCGACGATCTACCACACGTAACTTTTTGTTTAACCGTTCAACCTCAATTAAGAGACATGATGGGAAACGTCGAGGAGGTCGATTTGTAAAGCCCATTGATGAACCCAAAATGTCAGCCCAATCCATACATGAAAATCAGTATGGGCCTGATTTTGTTATGGCCCAAAATTCGGCTATATCTACGTTTATCAGTTACCCAGACATGGGCAAGGTAGAACCTAGTCGAAGCAGATCCTATATCAAGTTGAAACGACTCCGTTTCAAAGGGACTGTGAATATCAAACGTGTTCAATCGGATGTGAACATGGATGGGTCTATCTCCAAAGTGGAAGGAGTGTTCTCTCTTATTATTGTTGTAGATCGGAAACCTCACTTGGGTCCTAGTGGTTGTCTGCATACATTCGACGAGCTGTTCGGAGCAATGATTCACAGTCATGGCAATCTCAGCATTGTCCCTTCTCTGAAAGACCGTTATTATATTCGCCATGTGTTCAAACGTGTACTGTCCGTTGATAACGAGACGCTGATAGTAGACGTGGAAGGATCCACTACCCTATCTAATAGGCGTTTTAATATTTGGTCCAGTTTCAAGGACGTTGATCGTGATTCATGCAAGGGTGTTTATGATAACATAAGCAAGAACGCCCTTTTAATTTATTATTGCTGGATGTCAGATATGCCTTCAAAGGCCTCCACTTATGTATCTTTTGATCTTGACTATGTTGGTTAA |
Protein Sequence | MYPFRSKRGYCFSHRRSTTRNFLFNRSTSIKRHDGKRRGGRFVKPIDEPKMSAQSIHENQYGPDFVMAQNSAISTFISYPDMGKVEPSRSRSYIKLKRLRFKGTVNIKRVQSDVNMDGSISKVEGVFSLIIVVDRKPHLGPSGCLHTFDELFGAMIHSHGNLSIVPSLKDRYYIRHVFKRVLSVDNETLIVDVEGSTTLSNRRFNIWSSFKDVDRDSCKGVYDNISKNALLIYYCWMSDMPSKASTYVSFDLDYVG |
NCBI Accession | YP_003856014.1 |
---|---|
Location | 1217-2098 |
Gene Name | BC1 |
Protein Name | movement protein |
Coding Region | ATGAATTCTCAGTTAGCATATCCTCCAAGCGCCTTCAATTACATAGAGTCTCACAGAGACGAATATCAGCTCTGCCATGACCTAACTGAGATAATCTTGCAATTTCCATCGACGGCGTCCCAGTTGACGGCAAGACTCAGCCGTAGCTGCATGAAGATAGATCATTGTGTCATAGAGTACAGGCAACAGGTTCCAATTAACGCAACTGGGACGGTAATTGTGGAGATCCATGACAAGAGGATGACAGACAATGAGTCTTTGCAGGCGTCGTGGACTTTTCCGATCAGATGCAACATAGATCTCCACTATTTTTCAGCTTCATTCTTCTCTCTCAAAGACCCGATTCCATGGAAACTCTATTACAGAGTTTCAGATACCAATGTTCACCAGCGAACCCACTTCGCCAAGTTTAAAGGGAAGCTGAAATTGTCCACAGCGAAACACTCAGTAGATATCCCCTTCCGGGCACCGACGGTCAAAATACTGTCAAAACAGTTCACAGACAAAGATGTAGACTTTTCGCATGTGGACTATGGGAAATGGGAGAGGAAGCCCATAAGATGTGCATCGATGTCTAGAATTGGGTCTAAATGTCCAATTGAGCTTGGGCCTGGAGAATCATGGGCTTCCAGAAGTACGATAGGAACGGCCCAATCAGATGTGGACTCGGAAATAGAAAACGGACTCCACCCATACAGACATCTGAGCAGGCTTGGAACCAGCGTTCTGGACCCAGGAGAGTCTGCTTCAATAGTGGGAGCCCAGAGAGCGGAATCCAACATTACAATGTCTTTGGGCCAGTTGAACGAGTTAGTTAGGACAACAGTCCAAGAATGTATTAATAATAATTGTCAGGCTTCTCAGGCCAAGTCGTTGAAATAA |
Protein Sequence | MNSQLAYPPSAFNYIESHRDEYQLCHDLTEIILQFPSTASQLTARLSRSCMKIDHCVIEYRQQVPINATGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVDYGKWERKPIRCASMSRIGSKCPIELGPGESWASRSTIGTAQSDVDSEIENGLHPYRHLSRLGTSVLDPGESASIVGAQRAESNITMSLGQLNELVRTTVQECINNNCQASQAKSLK |
1 |
Gautam S, et al. Viruses. 2023 Jan 26;15(2):357. doi: 10.3390/v15020357. PMID: 36851571 |
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2 |
Characterization of sida golden mottle virus isolated from Sida santaremensis Monteiro in Florida. Al-Aqeel HA, et al. Arch Virol. 2018 Oct;163(10):2907-2911. doi: 10.1007/s00705-018-3903-x. Epub 2018 Jun 21. PMID: 29931396 |
3 |
Complete Genome Sequence of a New Strain of Sida Golden Mosaic Buckup Virus from Florida, USA. Iqbal Z, et al. Microbiol Resour Announc. 2020 Jan 9;9(2):e01115-19. doi: 10.1128/MRA.01115-19. PMID: 31919159 |
4 |
First Report of Sida golden mosaic virus Infecting Snap Bean (Phaseolus vulgaris) in Florida. Durham TC, et al. Plant Dis. 2010 Apr;94(4):487. doi: 10.1094/PDIS-94-4-0487B. PMID: 30754495 |
5 |
Fiallo-Olivé E, et al. Arch Virol. 2010 Sep;155(9):1535-7. doi: 10.1007/s00705-010-0761-6. Epub 2010 Jul 31. PMID: 20677027 |
6 |
First report of the complete sequence of Sida golden yellow vein virus from Jamaica. Stewart CS, et al. Arch Virol. 2011 Aug;156(8):1481-4. doi: 10.1007/s00705-011-1030-z. Epub 2011 May 29. PMID: 21625977 |
7 |
The molecular characterisation of a Sida-infecting begomovirus from Jamaica. Stewart C, et al. Arch Virol. 2014 Feb;159(2):375-8. doi: 10.1007/s00705-013-1814-4. Epub 2013 Aug 11. PMID: 23933798 |
8 |
Macroptilium yellow mosaic virus, a New Begomovirus Infecting Macroptilium lathyroides in Cuba. Ramos PL, et al. Plant Dis. 2002 Sep;86(9):1049. doi: 10.1094/PDIS.2002.86.9.1049B. PMID: 30818538 |
9 |
Gautam S, et al. Viruses. 2022 May 20;14(5):1104. doi: 10.3390/v14051104. PMID: 35632844 |
10 |
Field Screen and Genotyping of Phaseolus vulgaris against Two Begomoviruses in Georgia, USA. Agarwal G, et al. Insects. 2021 Jan 10;12(1):49. doi: 10.3390/insects12010049. PMID: 33435235 |