Sida golden mosaic Brazil virus

Basic Information

Genus Begomovirus
Isolate Brazil
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

FN436001
ACCGGATGGCCGCGATTTTTTCGCCCCCCCCCACGTGGCGCTCTCTCCATCGCGCGATTTTCTTTTCCTTCCCCCTTTCTCGCGCGCGTGTCTCCTTTAATTTCAATTAAAGGAAAGTACTTTTGGTTCTACCAATGGTATTGCGCCTGGGGAGCCTAGATATTTGTGTTTAGACTTGGTCACTAAGTTTTATAGTCCCTATAAAACTAAAGCAAGCCTGACGTCAGACTTTAATTCAGAATGCCAAAGCGGGATCCCTCATGGCGCATGGTGGTGGGAACCTCAAAGGTTAGCCGCTCCTCCAATTTTTCACCTCGTGGAGGTGGAGGCCCAAGAGTCAACAAGGCCTCAGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATATATAGGACGCTGAGGACGCCTGATGTTCCCAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTACGAGCAGCGTCATGACATTTCTCATGTCGGCAAGGTGATGTGTATATCTGATGTGACACGAGGTAATGGTATTACCCATCGTGTTGGTAAGCGTTTCTGTGTTAAATCTGTATATATTTTAGGGAAGATATGGATGGACGAGAACATCAAGTTAAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGAGATCGTAGACCTTATGGCACCCCGATGGATTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCAACCGTCAAGAACGATCTCCGTGATCGTTTCCAAGTCATGCACAAGTTCTATGCCAAGGTCACTGGTGGGCAATATGCGAGCAACGAGCAGGCTCTGGTCAAGCGTTTCTGGAAGGTCAACAACCATGTTGTCTACAACCACCAGGAAGCTGGGAAATATGAGAATCATACTGAGAATGCATTGCTACTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCTACGCTTAAGATTCGGATCTATTTTTACGATTCGATCACCAATTAATAAATATTGAATTTTATTGAGTAATGTTCAAGTACATAGTTGACATATGATCTGTCTGTTGCGAAACGAACAGCTCTAATTACATTGTTAATGGTAATAACCCCTAGGTTATCTAAATACAACATGACTAAATGTCTAAACCTATTCAAATAAGTCGTTCCAGAAGCTCGAATCGATGTCGTCCAGACTTGGAAGGTCATGTAAGCCTTGTGGAGACCCAACGCTCTCCTGAGGTTGTGATTGAACCTGATCTGGACGTGATATACTCTGGTCGTTGTGTATGGTAGATCCTCTACCTCGTATATCTTGAAATAGAGGGGATTTGTTATCTCCCAGATATAAACGCCATTCTCTGCCTGATGTGCAGTGATGAGTGCCCCTGTGCGTGAATCCATGTCCCGTGCAGTTCAGGTGCTGATATATCGTGCACCCGCACTCTAGATCAACTCGCCGTCGTCTGATCGCTCTCCTCTTGGCGATCCTGTGCTGTCGTTTGATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTATGGAGTGTCCACGACCTCAAGGCTGCATTTTCCTGCTTGTCTAGGAATTCTTTATAGCTGGCCCCCTCTCCTGGATTGCAAAGCACGATTGATGGGATTCCCCCTTTAATTTGAACTGGCTTTCCGTACTTGCAGTTGCTTTGCCAGTCCCTCTGGGCTCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGGCTAACGTCATCAATGACGTTATATTCCACTTCATTTGAGAAGACTCTAGAATTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAAAGCACGAGCCCACATCGTCTTCCCTGTTCTTGAATCACCCTCAACAATCAAACTGATAGGTCTGTCTGGCCGCGCAGCGACAACCCTTCCAAAATAATCATCAGCCCACTCTTGCATCTCATGAGGAACGTTAGTGAATGTTGAGAGTTGAAACGGAGGAACCCATGGTTCTGGAGCCTTCTTGAAGAGCTTATCCAGGTTGGTTGAGAGGTTATGGTACTGGAAGAGAAACTTCTCTGGTAGTTTCTCCTTTATTATCTGCATAGCTTCTTCCTTTGAAGAAGAATTCAACGCCTCTGATGCTGCGTCATTAGCTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGATCTGAAAAGTACCCCAGTCGATGTAATCACCGTCCTTCTTGATGTAGGACTTGACATCAGATGATGACTTTGCACCCTGTATATTGGCATGGGCGACGGAAGAGGTGTTTGGGTGTTTAAGATCGAAGAATCTGCAATTTGTGCACTGGAACTTGCCTTCAAATTGAACAAGGGCATGCAGATGTGGTTTCCCATTCTCGTGGAACTCTCTACATACCCTGATATATTTCTTCTTGCTGGGTGTTTCTAGGTTTATGAGTTGTTCAAGTGCAGTTTCTTTAGCAATCGAACAATCAGGGTATGTTAGGAAATAGTTTTTGGCATTGACCTTAAAACGCTTCGGTGGTGGCATATTTGTAAATAAGAGGGTGTACCCCGAACTAGCTCTCTCTCAAAGTCTATATTATTTGGTGTAAGGGTGCCAATATATACTAGAAGTTCCTAAGGTAACAATTGGTACCCCAATAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession CBA18086.1
Location 241-996
Gene Name AV1
Protein Name coat protein
Coding Region ATGCCAAAGCGGGATCCCTCATGGCGCATGGTGGTGGGAACCTCAAAGGTTAGCCGCTCCTCCAATTTTTCACCTCGTGGAGGTGGAGGCCCAAGAGTCAACAAGGCCTCAGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATATATAGGACGCTGAGGACGCCTGATGTTCCCAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTACGAGCAGCGTCATGACATTTCTCATGTCGGCAAGGTGATGTGTATATCTGATGTGACACGAGGTAATGGTATTACCCATCGTGTTGGTAAGCGTTTCTGTGTTAAATCTGTATATATTTTAGGGAAGATATGGATGGACGAGAACATCAAGTTAAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGAGATCGTAGACCTTATGGCACCCCGATGGATTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCAACCGTCAAGAACGATCTCCGTGATCGTTTCCAAGTCATGCACAAGTTCTATGCCAAGGTCACTGGTGGGCAATATGCGAGCAACGAGCAGGCTCTGGTCAAGCGTTTCTGGAAGGTCAACAACCATGTTGTCTACAACCACCAGGAAGCTGGGAAATATGAGAATCATACTGAGAATGCATTGCTACTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCTACGCTTAAGATTCGGATCTATTTTTACGATTCGATCACCAATTAA
Protein Sequence MPKRDPSWRMVVGTSKVSRSSNFSPRGGGGPRVNKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession CBA18087.1
Location 993-1391
Gene Name AC3
Protein Name replication enhancer
Coding Region ATGGATTCACGCACAGGGGCACTCATCACTGCACATCAGGCAGAGAATGGCGTTTATATCTGGGAGATAACAAATCCCCTCTATTTCAAGATATACGAGGTAGAGGATCTACCATACACAACGACCAGAGTATATCACGTCCAGATCAGGTTCAATCACAACCTCAGGAGAGCGTTGGGTCTCCACAAGGCTTACATGACCTTCCAAGTCTGGACGACATCGATTCGAGCTTCTGGAACGACTTATTTGAATAGGTTTAGACATTTAGTCATGTTGTATTTAGATAACCTAGGGGTTATTACCATTAACAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAGATCATATGTCAACTATGTACTTGAACATTACTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGALITAHQAENGVYIWEITNPLYFKIYEVEDLPYTTTRVYHVQIRFNHNLRRALGLHKAYMTFQVWTTSIRASGTTYLNRFRHLVMLYLDNLGVITINNVIRAVRFATDRSYVNYVLEHYSIKFNIY

NCBI Accession CBA18088.1
Location 1138-1527
Gene Name AC2
Protein Name transcriptional regulator
Coding Region ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACGACAGCACAGGATCGCCAAGAGGAGAGCGATCAGACGACGGCGAGTTGATCTAGAGTGCGGGTGCACGATATATCAGCACCTGAACTGCACGGGACATGGATTCACGCACAGGGGCACTCATCACTGCACATCAGGCAGAGAATGGCGTTTATATCTGGGAGATAACAAATCCCCTCTATTTCAAGATATACGAGGTAGAGGATCTACCATACACAACGACCAGAGTATATCACGTCCAGATCAGGTTCAATCACAACCTCAGGAGAGCGTTGGGTCTCCACAAGGCTTACATGACCTTCCAAGTCTGGACGACATCGATTCGAGCTTCTGGAACGACTTATTTGAATAG
Protein Sequence MLNSSSSTPPSIKRQHRIAKRRAIRRRRVDLECGCTIYQHLNCTGHGFTHRGTHHCTSGREWRLYLGDNKSPLFQDIRGRGSTIHNDQSISRPDQVQSQPQESVGSPQGLHDLPSLDDIDSSFWNDLFE

NCBI Accession CBA18089.1
Location 1439-2524
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGCCACCACCGAAGCGTTTTAAGGTCAATGCCAAAAACTATTTCCTAACATACCCTGATTGTTCGATTGCTAAAGAAACTGCACTTGAACAACTCATAAACCTAGAAACACCCAGCAAGAAGAAATATATCAGGGTATGTAGAGAGTTCCACGAGAATGGGAAACCACATCTGCATGCCCTTGTTCAATTTGAAGGCAAGTTCCAGTGCACAAATTGCAGATTCTTCGATCTTAAACACCCAAACACCTCTTCCGTCGCCCATGCCAATATACAGGGTGCAAAGTCATCATCTGATGTCAAGTCCTACATCAAGAAGGACGGTGATTACATCGACTGGGGTACTTTTCAGATCGACGGAAGATCTGCTAGAGGAGGTCAGCAGACAGCTAATGACGCAGCATCAGAGGCGTTGAATTCTTCTTCAAAGGAAGAAGCTATGCAGATAATAAAGGAGAAACTACCAGAGAAGTTTCTCTTCCAGTACCATAACCTCTCAACCAACCTGGATAAGCTCTTCAAGAAGGCTCCAGAACCATGGGTTCCTCCGTTTCAACTCTCAACATTCACTAACGTTCCTCATGAGATGCAAGAGTGGGCTGATGATTATTTTGGAAGGGTTGTCGCTGCGCGGCCAGACAGACCTATCAGTTTGATTGTTGAGGGTGATTCAAGAACAGGGAAGACGATGTGGGCTCGTGCTTTAGGCCCACATAATTACTTGAGTGGACATCTGGACTTCAATTCTAGAGTCTTCTCAAATGAAGTGGAATATAACGTCATTGATGACGTTAGCCCGCACTACCTAAAGCTAAAGCACTGGAAAGAATTGATTGGAGCCCAGAGGGACTGGCAAAGCAACTGCAAGTACGGAAAGCCAGTTCAAATTAAAGGGGGAATCCCATCAATCGTGCTTTGCAATCCAGGAGAGGGGGCCAGCTATAAAGAATTCCTAGACAAGCAGGAAAATGCAGCCTTGAGGTCGTGGACACTCCATAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACGACAGCACAGGATCGCCAAGAGGAGAGCGATCAGACGACGGCGAGTTGA
Protein Sequence MPPPKRFKVNAKNYFLTYPDCSIAKETALEQLINLETPSKKKYIRVCREFHENGKPHLHALVQFEGKFQCTNCRFFDLKHPNTSSVAHANIQGAKSSSDVKSYIKKDGDYIDWGTFQIDGRSARGGQQTANDAASEALNSSSKEEAMQIIKEKLPEKFLFQYHNLSTNLDKLFKKAPEPWVPPFQLSTFTNVPHEMQEWADDYFGRVVAARPDRPISLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEVEYNVIDDVSPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKQENAALRSWTLHNAKFIFLDSPLYQTTAQDRQEESDQTTAS

NCBI Accession CBA18090.1
Location 2110-2367
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGAAACCACATCTGCATGCCCTTGTTCAATTTGAAGGCAAGTTCCAGTGCACAAATTGCAGATTCTTCGATCTTAAACACCCAAACACCTCTTCCGTCGCCCATGCCAATATACAGGGTGCAAAGTCATCATCTGATGTCAAGTCCTACATCAAGAAGGACGGTGATTACATCGACTGGGGTACTTTTCAGATCGACGGAAGATCTGCTAGAGGAGGTCAGCAGACAGCTAATGACGCAGCATCAGAGGCGTTGA
Protein Sequence MGNHICMPLFNLKASSSAQIADSSILNTQTPLPSPMPIYRVQSHHLMSSPTSRRTVITSTGVLFRSTEDLLEEVSRQLMTQHQRR

References More References in PubMed

1

First Report of Sida micrantha mosaic virus in Phaseolus vulgaris in Brazil.

Fernandes-Acioli NAN, et al.  Plant Dis. 2011 Sep;95(9):1196. doi: 10.1094/PDIS-05-10-0343.

PMID: 30732032
2

Tomato yellow spot virus, a tomato-infecting begomovirus from Brazil with a closer relationship to viruses from Sida sp., forms pseudorecombinants with begomoviruses from tomato but not from Sida.

Andrade EC, et al.  J Gen Virol. 2006 Dec;87(Pt 12):3687-3696. doi: 10.1099/vir.0.82279-0.

PMID: 17098986
3

Complete sequence of a new bipartite begomovirus infecting Sida sp. in Northeastern Brazil.

Macedo MA, et al.  Arch Virol. 2020 Jan;165(1):253-256. doi: 10.1007/s00705-019-04458-9. Epub 2019 Nov 22.

PMID: 31758274
4

Reconstruction and Characterization of Full-Length Begomovirus and Alphasatellite Genomes Infecting Pepper through Metagenomics.

Bornancini VA, et al.  Viruses. 2020 Feb 11;12(2):202. doi: 10.3390/v12020202.

PMID: 32054104
5

Two new begomoviruses infecting tomato and Hibiscus sp. in the Amazon region of Brazil.

Quadros AFF, et al.  Arch Virol. 2019 Jul;164(7):1897-1901. doi: 10.1007/s00705-019-04245-6. Epub 2019 Apr 10.

PMID: 30972592
6

Three distinct begomoviruses associated with soybean in central Brazil.

Fernandes FR, et al.  Arch Virol. 2009;154(9):1567-70. doi: 10.1007/s00705-009-0463-0. Epub 2009 Jul 28.

PMID: 19636495