Sida golden mosaic Braco virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002823345.1 |
| Isolate |
Jamaica |
| Release date |
2018/8/25 |
| Submitter |
Martin,D.P., Stewart,C.S., Kon,T., Gilbertson,R.L., Roye,M.E. |
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTCCGCCTTTTACTTTCCACGCGCGCCCCGCTTTTCTCACTCGCGCTATCGTCCAATCATATTGCGCCTGCCGCGCCTAATTAATTTAAACAACTTGGGCCCTAAGTTGTTGTCTGGGCCTATAAAGGAAAAGCGGGTTTGGGCCACAGTCTTTAATTCAAAATGACTAAGCGCGATTCATCTTGGCGCTCGATTGCTGGAACCTCAAAGGTTCGTCGCACGTTGAATTTCTCCCCACGTGGAGGTGGTGGCCCAAAACAGACACGGGCCTCAGAATGGGTTAATAGGCCTATGTACAGGAAGCCCTTGATCTATCGGACTTTACGGACGCCCGACGTGCCCAGAGGTTGCGAAGGCCCGTGTAAGGTACAGTCCTATGAACAGCGTCATGATATCTCCCACGTCGGCAAGGTGATGTGTATTTCTGATGTCACTCGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTCGACCATATGGCACTCCAATGGACTTTGGCCAAGTGTTCAACATGTATGACAATGAGCCCAGTACTGCCACTGTGAAAAACGATCTCAGGGATCGTTACCAGGTTATGCATAGGTTCTACGGCAAGGTCACAGGTGGTCAATATGCTAGCAACGAGCAGGCTTTGGTCAGGCGTTTCTGGAAGGTCAACAACCATGTGGTTTACAACCACCAAGAGGCTGGCAAGTACGAGAATCACACTGAGAACGCGTTGTTATTGTATATGGCATGTACACATGCTTCTAACCCCGTGTATGCGACATTGAAAATTCGAATCTATTTTTATGATTCGATAACAAATTAATAAAATTTGAATTTTATTTCATGATGTTCAATTACATAACTTACATGCGCATTGTCTGTTGCGAACTGCACAGCTCTAATTACATTGTTAATGGAAATTACGCCTAAGTTGTCTAAGTACATATTGACTAACCGTCTAAACCTAACTAAATAAGTTGACCCAGAAGCTGTCATCGATTTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGGAGACCCAACACTCTCCTCAGGTTGTGGTTGAATCGTATCTGGACGTGGTACACTCTGGTCCTGGTGTATAGTAGTTCCTCTACTCTGTCTATCTTGAAATACAGGGGATTTTCTATCTCCCAGATATAGACGCCATTCTCTGCCTGACGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGACCTGTACAGCCTATGTGGAGGTATATGGAGCACCCGCAATCTAAATCAATCCTGCGTCTCCTGATGGCCCGCCTCTTGGCTTGCCTGTGTGCCTTCTTGATACAAGGGGGCTGTGAGGGTGATGAATTTAGCATTCTTGATAGTCCAATTCTTGAGAGCTGAGTTTTCAGCTTTGTCCAGGAATTCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCGATGACGTTATATTCCACTTCATTTGAATAGACTCTGGAATTGAAGTCTAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCTACTATGATACTCACAGGCCTCTCCGGCCGCGCAGCGGCACCTCTGCCGAAATAGTCATCAGCCCATTGTTGCATCTCGGCCGGTACCTTTGTGAAAGAGGAGAGGTGATATGGAGGAGTCCATGGCTCATGAACCTTTGCGAAGATTCTATCCAAATTACTTGATAAGTTATGATATTGGAATAGAAATTTTTCTGGTAATTTCTCTTTTATGATTTGCATGGCCTCCTCCTTTGTTCCAGAGTTCAACGCTTCAGCAGCTGCGTCATTAGCTGATTGTTGACCGCCTCGAGCACTTCTACCGTCGATCTGGAACACTCCCCATTCAATGGTGTCCCCGTCCTTTGCGATGTAGGACTTGACGTCGGAACTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGACCTGTTTGGGGACACCAAGTCGAAGAATCTGTTATTTGTGCACTGGTATTTACCCTCGAACTGAACAAGCACGTGGAGATGAGGGTTCCCATTTTGATGAAGTTCTCTGCAGATTTTGATGAACTTCTTGTTCACGGGTGTAGAAAGATTTTGTAATTGGGAAAGTGCTTCTTCTTTGGTTAAAGAGCAGTCTGGATAAGTGATGAAATAGTTTTTGGCTTTAACATAGAAAGAACCCTTTCGTGGCATTTTTGTAATAAGATGTGTGTACCCCCAATAGCTATCTCGCTCAAATTCCTATGAATTGGGGGTACTAGGGGTACATTTATATTAGAAGTTCCATGGGTTAGATCAGACACGTGGCGGCCATCCGATATAATATT
Gene Information
|
NCBI Accession
|
YP_009506471.1
|
|
Location
|
183-938 |
|
Gene Name
|
CP |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGACTAAGCGCGATTCATCTTGGCGCTCGATTGCTGGAACCTCAAAGGTTCGTCGCACGTTGAATTTCTCCCCACGTGGAGGTGGTGGCCCAAAACAGACACGGGCCTCAGAATGGGTTAATAGGCCTATGTACAGGAAGCCCTTGATCTATCGGACTTTACGGACGCCCGACGTGCCCAGAGGTTGCGAAGGCCCGTGTAAGGTACAGTCCTATGAACAGCGTCATGATATCTCCCACGTCGGCAAGGTGATGTGTATTTCTGATGTCACTCGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTCGACCATATGGCACTCCAATGGACTTTGGCCAAGTGTTCAACATGTATGACAATGAGCCCAGTACTGCCACTGTGAAAAACGATCTCAGGGATCGTTACCAGGTTATGCATAGGTTCTACGGCAAGGTCACAGGTGGTCAATATGCTAGCAACGAGCAGGCTTTGGTCAGGCGTTTCTGGAAGGTCAACAACCATGTGGTTTACAACCACCAAGAGGCTGGCAAGTACGAGAATCACACTGAGAACGCGTTGTTATTGTATATGGCATGTACACATGCTTCTAACCCCGTGTATGCGACATTGAAAATTCGAATCTATTTTTATGATTCGATAACAAATTAA |
|
Protein Sequence
|
MTKRDSSWRSIAGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMYRKPLIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRYQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
|
NCBI Accession
|
YP_009506472.1
|
|
Location
|
935-1333 |
|
Gene Name
|
REn |
|
Protein Name
|
replication enhancer |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATAGACAGAGTAGAGGAACTACTATACACCAGGACCAGAGTGTACCACGTCCAGATACGATTCAACCACAACCTGAGGAGAGTGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGAAATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAGGTTTAGACGGTTAGTCAATATGTACTTAGACAACTTAGGCGTAATTTCCATTAACAATGTAATTAGAGCTGTGCAGTTCGCAACAGACAATGCGCATGTAAGTTATGTAATTGAACATCATGAAATAAAATTCAAATTTTATTAA |
|
Protein Sequence
|
MDSRTGELITARQAENGVYIWEIENPLYFKIDRVEELLYTRTRVYHVQIRFNHNLRRVLGLHKAYLNFQVWTKSMTASGSTYLVRFRRLVNMYLDNLGVISINNVIRAVQFATDNAHVSYVIEHHEIKFKFY |
|
NCBI Accession
|
YP_009506473.1
|
|
Location
|
1080-1469 |
|
Gene Name
|
TrAP |
|
Protein Name
|
transcriptional activator protein |
|
Coding Region
|
ATGCTAAATTCATCACCCTCACAGCCCCCTTGTATCAAGAAGGCACACAGGCAAGCCAAGAGGCGGGCCATCAGGAGACGCAGGATTGATTTAGATTGCGGGTGCTCCATATACCTCCACATAGGCTGTACAGGTCATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATAGACAGAGTAGAGGAACTACTATACACCAGGACCAGAGTGTACCACGTCCAGATACGATTCAACCACAACCTGAGGAGAGTGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGAAATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAG |
|
Protein Sequence
|
MLNSSPSQPPCIKKAHRQAKRRAIRRRRIDLDCGCSIYLHIGCTGHGFTHRGTHHCTSGREWRLYLGDRKSPVFQDRQSRGTTIHQDQSVPRPDTIQPQPEESVGSPQSLPELPSLDEIDDSFWVNLFS |
|
NCBI Accession
|
YP_009506474.1
|
|
Location
|
1381-2466 |
|
Gene Name
|
Rep |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCACGAAAGGGTTCTTTCTATGTTAAAGCCAAAAACTATTTCATCACTTATCCAGACTGCTCTTTAACCAAAGAAGAAGCACTTTCCCAATTACAAAATCTTTCTACACCCGTGAACAAGAAGTTCATCAAAATCTGCAGAGAACTTCATCAAAATGGGAACCCTCATCTCCACGTGCTTGTTCAGTTCGAGGGTAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTGTCCCCAAACAGGTCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGTTCCGACGTCAAGTCCTACATCGCAAAGGACGGGGACACCATTGAATGGGGAGTGTTCCAGATCGACGGTAGAAGTGCTCGAGGCGGTCAACAATCAGCTAATGACGCAGCTGCTGAAGCGTTGAACTCTGGAACAAAGGAGGAGGCCATGCAAATCATAAAAGAGAAATTACCAGAAAAATTTCTATTCCAATATCATAACTTATCAAGTAATTTGGATAGAATCTTCGCAAAGGTTCATGAGCCATGGACTCCTCCATATCACCTCTCCTCTTTCACAAAGGTACCGGCCGAGATGCAACAATGGGCTGATGACTATTTCGGCAGAGGTGCCGCTGCGCGGCCGGAGAGGCCTGTGAGTATCATAGTAGAAGGTGATTCAAGGACAGGGAAGACGATGTGGGCTCGTGCGTTAGGCCCACATAATTACCTCAGTGGACACCTAGACTTCAATTCCAGAGTCTATTCAAATGAAGTGGAATATAACGTCATCGATGACGTCGCACCGCAATATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGCTATAAAGAATTCCTGGACAAAGCTGAAAACTCAGCTCTCAAGAATTGGACTATCAAGAATGCTAAATTCATCACCCTCACAGCCCCCTTGTATCAAGAAGGCACACAGGCAAGCCAAGAGGCGGGCCATCAGGAGACGCAGGATTGA |
|
Protein Sequence
|
MPRKGSFYVKAKNYFITYPDCSLTKEEALSQLQNLSTPVNKKFIKICRELHQNGNPHLHVLVQFEGKYQCTNNRFFDLVSPNRSTHFHPNIQGAKSSSDVKSYIAKDGDTIEWGVFQIDGRSARGGQQSANDAAAEALNSGTKEEAMQIIKEKLPEKFLFQYHNLSSNLDRIFAKVHEPWTPPYHLSSFTKVPAEMQQWADDYFGRGAAARPERPVSIIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKAENSALKNWTIKNAKFITLTAPLYQEGTQASQEAGHQETQD |
|
NCBI Accession
|
YP_009506475.1
|
|
Location
|
2052-2309 |
|
Gene Name
|
AC4 |
|
Protein Name
|
aC4 |
|
Coding Region
|
ATGGGAACCCTCATCTCCACGTGCTTGTTCAGTTCGAGGGTAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTGTCCCCAAACAGGTCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGTTCCGACGTCAAGTCCTACATCGCAAAGGACGGGGACACCATTGAATGGGGAGTGTTCCAGATCGACGGTAGAAGTGCTCGAGGCGGTCAACAATCAGCTAATGACGCAGCTGCTGAAGCGTTGA |
|
Protein Sequence
|
MGTLISTCLFSSRVNTSAQITDSSTWCPQTGQHISIQTFRELNPVPTSSPTSQRTGTPLNGECSRSTVEVLEAVNNQLMTQLLKR |