Sida common mosaic virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_002823325.1 |
| Isolate | Brazil |
| Release date | 2018/8/25 |
| Submitter | Castillo-Urquiza,G.P., Beserra,J.E. Jr., Bruckner,F.P., Lima,A.T., Varsani,A., Alfenas-Zerbini,P., Murilo Zerbini,F., Beserra,J.E.A. Jr., Lima,A.T.M., Zerbini,P.A., Zerbini,F.M. |
| Host | |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_038457
Gene Information
| NCBI Accession | YP_009506466.1 |
|---|---|
| Location | 228-977 |
| Gene Name | CP |
| Protein Name | coat protein |
| Coding Region | ATGCCTAAGCGGGATCCCTCATGGCGTTCGATGGCGGGAACCTCAAAGGTAAGCCGCTCCTCCAATTTCTCTCCTCGTGGAGGCCCAAAGATCAACAAGGCCTCCGAATGGGTAAACAGGCCCATGTACAGGAAGCCCAGGATATACAGGACGCTGAGAACTCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCTTACGAGCAACGTCACGATATTTCCCATGTGGGGAAAGTGATGTGTATATCTGATGTGACACGAGGTAACGGTATCACTCACCGTGTCGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTATAGGTAAGGTATGGATGGACGAGAACATCAAGCTCAAAAACCACACGAACAGTTGTATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGTACACCGATGGACTTTGGCCAAGTTTTCAACATGTTCGACAACGAGCCCAGTACTGCAACAGTAAAGAACGATCTCCGTGATCGTTATCAAGTCATGCACAAGTTCTACGCCAAGGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAGGCAGGGAAATACGAGAACCACACTGAAAACGCTCTGTTACTGTATATGGCATGTACACATGCCTCTAATCCTGTGTATGCGACCCTTAAAATCCGGATCTATTTTTATGATTCGGTTTCAAATTAA |
| Protein Sequence | MPKRDPSWRSMAGTSKVSRSSNFSPRGGPKINKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYIIGKVWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
| NCBI Accession | YP_009506467.1 |
|---|---|
| Location | 974-1372 |
| Gene Name | Ren |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACAGGGGAGTTCATCACTGCTCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTATATTTCAAGATCAACCATGTAGAAGACATCCTGTTCACAGGGACCAGAGTGTATCACAACCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCAGTGAAGGCTTCTGGGATGACATATTTACATAGATTTAGGCATTTAGTCATGTTGTATTTAGATCAATTAGGTGTAATCTCAATAAATAATGTTATTAGAGCTGTTCGTTTCGCGACGAACAGGCCTTATGTAAATCATGTACTGGAGAAGCATTCAATAAAATTCAAAATTTATTAA |
| Protein Sequence | MDSRTGEFITAPQAENGVYIWEITNPLYFKINHVEDILFTGTRVYHNQIRFNHNLRRALGLHKAFLNFQVWTTSVKASGMTYLHRFRHLVMLYLDQLGVISINNVIRAVRFATNRPYVNHVLEKHSIKFKIY |
| NCBI Accession | YP_009506468.1 |
|---|---|
| Location | 1119-1508 |
| Gene Name | Trap |
| Protein Name | trans-activating protein |
| Coding Region | ATGGTATTTTGGTCAACCTCACAACCCCTCTCTATCAAGGTTCAACACAGAGCGGCGAAGAAGAGGGCAACTCGCCGTAGAAGGATCGACCTAAATTGCGGGTGCTCCATATACGTCCACATCAACTGCCACAGCCATGGATTCACGCACAGGGGAGTTCATCACTGCTCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTATATTTCAAGATCAACCATGTAGAAGACATCCTGTTCACAGGGACCAGAGTGTATCACAACCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCAGTGAAGGCTTCTGGGATGACATATTTACATAG |
| Protein Sequence | MVFWSTSQPLSIKVQHRAAKKRATRRRRIDLNCGCSIYVHINCHSHGFTHRGVHHCSSSREWRVYLGDNKSPIFQDQPCRRHPVHRDQSVSQPDTVQPQPQESVGSPQGIPELPSLDDISEGFWDDIFT |
| NCBI Accession | YP_009506469.1 |
|---|---|
| Location | 1539-2552 |
| Gene Name | Rep |
| Protein Name | replication-associated protein |
| Coding Region | ATGCCACGAAAGGGGTCTTTCTCTATTAAAGCTAAAAATTATTTTCTTACATATCCTCAGTGCTCTCTTCCTAAAGAAGAAGCTCTCGAACAAATTAGGGTTATCCAAACGCCGGTCAACAAGAAATTCATCAAGGTTGCAAGAGAGCTACACGAAGATGGGCAGCCACATCTCCACGTTCTCGTTCAGTTCGAAGGGAAGTTCAACTGCACAAATAGCAGACTGTTCGACTTGGTATCCCCATCCAGGTCAACACATTTCCATCCGAACATACAGGGTGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGATGGTGATACAGTCGAATGGGGGACGTTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGACGTAGCCGCCGAAGCGTTGAATGCTGGAACAAAGGAGGAGGCGATGATGATTATCAAAGAAAAGATGCCGGAAAAGTTCCTCTTCCAGTACCATAACCTATCCAGTAACCTGGATAGAATTTTCAAAAAGGCTCCGGAGCCATGGACTCCTCCGTTTCCCCTCTCTTCTTTCACTAACGTTCCGGACGAGATGCAGTCTTGGGCTGATGACTATTTTGGGCTTGTCGTTTCCGCTGCGCGGCCAGAGAGGCCTGTGAGTATCATAATCGAAGGTGATAGTCGGACGGGGAAGACGATGTGGGCTAGAGCTTTAGGGGCCCATAATTATCTTAGTGGACACCTGGATTTCAATTCCAGGGTTTACTCGAACGAAGTGGATTATAACGTCATTGATGACGTCCCTCCGCATTACCTAAAGCTAAAGCACTGGAAAGAGTTGATTGGGGCCCAAAAAGACTGGCAATCAAATTGTAAATACGGAAAGCCAGTTCAAATTAAAGGTGGTATCCCATCAATCGTGCTCTGCAATCCAGGTGAGGGTTCCAGCTATAAAATCTCAATAATGTTTAGGAATCAAGGGAGGTTACGAGAGAAAGGAGTTTTTTGGGCAAAGAGGTAA |
| Protein Sequence | MPRKGSFSIKAKNYFLTYPQCSLPKEEALEQIRVIQTPVNKKFIKVARELHEDGQPHLHVLVQFEGKFNCTNSRLFDLVSPSRSTHFHPNIQGAKSSSDVKSYVEKDGDTVEWGTFQIDGRSARGGQQTANDVAAEALNAGTKEEAMMIIKEKMPEKFLFQYHNLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEMQSWADDYFGLVVSAARPERPVSIIIEGDSRTGKTMWARALGAHNYLSGHLDFNSRVYSNEVDYNVIDDVPPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKISIMFRNQGRLREKGVFWAKR |
| NCBI Accession | YP_009506470.1 |
|---|---|
| Location | 2153-2395 |
| Gene Name | AC4 |
| Protein Name | AC4 |
| Coding Region | ATGGGCAGCCACATCTCCACGTTCTCGTTCAGTTCGAAGGGAAGTTCAACTGCACAAATAGCAGACTGTTCGACTTGGTATCCCCATCCAGGTCAACACATTTCCATCCGAACATACAGGGTGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGATGGTGATACAGTCGAATGGGGGACGTTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGACGTAG |
| Protein Sequence | MGSHISTFSFSSKGSSTAQIADCSTWYPHPGQHISIRTYRVLNPAPTSSPTSRKMVIQSNGGRSRSTEEVLEEVSRRLTT |
References More References in PubMed
| 1 |
First Report of Sida micrantha mosaic virus in Phaseolus vulgaris in Brazil. Fernandes-Acioli NAN, et al. Plant Dis. 2011 Sep;95(9):1196. doi: 10.1094/PDIS-05-10-0343. PMID: 30732032 |
|---|---|
| 2 |
Jovel J, et al. Arch Virol. 2004 Apr;149(4):829-41. doi: 10.1007/s00705-003-0235-1. Epub 2003 Dec 8. PMID: 15045569 |
| 3 |
Collins AM, et al. Virus Genes. 2009 Dec;39(3):387-95. doi: 10.1007/s11262-009-0401-y. Epub 2009 Sep 20. PMID: 19768650 |
| 4 |
Macroptilium yellow mosaic virus, a New Begomovirus Infecting Macroptilium lathyroides in Cuba. Ramos PL, et al. Plant Dis. 2002 Sep;86(9):1049. doi: 10.1094/PDIS.2002.86.9.1049B. PMID: 30818538 |
| 5 |
Idris AM, et al. Plant Dis. 2002 May;86(5):558. doi: 10.1094/PDIS.2002.86.5.558C. PMID: 30818684 |
| 6 |
Mugerwa H, et al. Cells. 2022 Jun 29;11(13):2060. doi: 10.3390/cells11132060. PMID: 35805143 |
| 7 |
Field Screen and Genotyping of Phaseolus vulgaris against Two Begomoviruses in Georgia, USA. Agarwal G, et al. Insects. 2021 Jan 10;12(1):49. doi: 10.3390/insects12010049. PMID: 33435235 |
| 8 |
Complete sequence of a new bipartite begomovirus infecting Sida sp. in Northeastern Brazil. Macedo MA, et al. Arch Virol. 2020 Jan;165(1):253-256. doi: 10.1007/s00705-019-04458-9. Epub 2019 Nov 22. PMID: 31758274 |
| 9 |
First Report of Okra yellow mosaic Mexico virus in Okra in the United States. Hernandez-Zepeda C, et al. Plant Dis. 2010 Jul;94(7):924. doi: 10.1094/PDIS-94-7-0924B. PMID: 30743573 |
| 10 |
Hernández-Zepeda C, et al. Virus Genes. 2007 Oct;35(2):369-77. doi: 10.1007/s11262-007-0080-5. Epub 2007 Feb 15. PMID: 17638064 |