Sida common mosaic virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002823325.1
Isolate Brazil
Release date 2018/8/25
Submitter Castillo-Urquiza,G.P., Beserra,J.E. Jr., Bruckner,F.P., Lima,A.T., Varsani,A., Alfenas-Zerbini,P., Murilo Zerbini,F., Beserra,J.E.A. Jr., Lima,A.T.M., Zerbini,P.A., Zerbini,F.M.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038457
ACCGGATGGCCGCGCGATTTTTTGCCCCCCGACGGGGCGCTATGGTGGCCGCTCGATCTCTCTCTCCCGCGCGCTGTACTCCTTTAATTCTAATTAAAGGGCTAACTTTAGTTGGGACCAATGATAGTGCGCCTGGGAAGCCTAGATATCTGCGCGAGACTGGGGGCGGAAGTTGTTGATCAACGGCTATAAATTAAAGGAAGACGGATCACAGTCTTTTATTCAAAATGCCTAAGCGGGATCCCTCATGGCGTTCGATGGCGGGAACCTCAAAGGTAAGCCGCTCCTCCAATTTCTCTCCTCGTGGAGGCCCAAAGATCAACAAGGCCTCCGAATGGGTAAACAGGCCCATGTACAGGAAGCCCAGGATATACAGGACGCTGAGAACTCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCTTACGAGCAACGTCACGATATTTCCCATGTGGGGAAAGTGATGTGTATATCTGATGTGACACGAGGTAACGGTATCACTCACCGTGTCGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTATAGGTAAGGTATGGATGGACGAGAACATCAAGCTCAAAAACCACACGAACAGTTGTATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGTACACCGATGGACTTTGGCCAAGTTTTCAACATGTTCGACAACGAGCCCAGTACTGCAACAGTAAAGAACGATCTCCGTGATCGTTATCAAGTCATGCACAAGTTCTACGCCAAGGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAGGCAGGGAAATACGAGAACCACACTGAAAACGCTCTGTTACTGTATATGGCATGTACACATGCCTCTAATCCTGTGTATGCGACCCTTAAAATCCGGATCTATTTTTATGATTCGGTTTCAAATTAATAAATTTTGAATTTTATTGAATGCTTCTCCAGTACATGATTTACATAAGGCCTGTTCGTCGCGAAACGAACAGCTCTAATAACATTATTTATTGAGATTACACCTAATTGATCTAAATACAACATGACTAAATGCCTAAATCTATGTAAATATGTCATCCCAGAAGCCTTCACTGATGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAACGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGGTTGTGATACACTCTGGTCCCTGTGAACAGGATGTCTTCTACATGGTTGATCTTGAAATATAGGGGATTTGTTATCTCCCAGATATACACGCCATTCTCTGCTTGAGGAGCAGTGATGAACTCCCCTGTGCGTGAATCCATGGCTGTGGCAGTTGATGTGGACGTATATGGAGCACCCGCAATTTAGGTCGATCCTTCTACGGCGAGTTGCCCTCTTCTTCGCCGCTCTGTGTTGAACCTTGATAGAGAGGGGTTGTGAGGTTGACCAAAATACCATTATCCATGGCCCAACTCAATAAACCAAATATTACCTCTTTGCCCAAAAAACTCCTTTCTCTCGTAACCTCCCTTGATTCCTAAACATTATTGAGATTTTATAGCTGGAACCCTCACCTGGATTGCAGAGCACGATTGATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTATTTACAATTTGATTGCCAGTCTTTTTGGGCCCCAATCAACTCTTTCCAGTGCTTTAGCTTTAGGTAATGCGGAGGGACGTCATCAATGACGTTATAATCCACTTCGTTCGAGTAAACCCTGGAATTGAAATCCAGGTGTCCACTAAGATAATTATGGGCCCCTAAAGCTCTAGCCCACATCGTCTTCCCCGTCCGACTATCACCTTCGATTATGATACTCACAGGCCTCTCTGGCCGCGCAGCGGAAACGACAAGCCCAAAATAGTCATCAGCCCAAGACTGCATCTCGTCCGGAACGTTAGTGAAAGAAGAGAGGGGAAACGGAGGAGTCCATGGCTCCGGAGCCTTTTTGAAAATTCTATCCAGGTTACTGGATAGGTTATGGTACTGGAAGAGGAACTTTTCCGGCATCTTTTCTTTGATAATCATCATCGCCTCCTCCTTTGTTCCAGCATTCAACGCTTCGGCGGCTACGTCGTTAGCCGTCTGCTGACCTCCTCTAGCACTTCTTCCGTCGATCTGGAACGTCCCCCATTCGACTGTATCACCATCTTTCTCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCACCCTGTATGTTCGGATGGAAATGTGTTGACCTGGATGGGGATACCAAGTCGAACAGTCTGCTATTTGTGCAGTTGAACTTCCCTTCGAACTGAACGAGAACGTGGAGATGTGGCTGCCCATCTTCGTGTAGCTCTCTTGCAACCTTGATGAATTTCTTGTTGACCGGCGTTTGGATAACCCTAATTTGTTCGAGAGCTTCTTCTTTAGGAAGAGAGCACTGAGGATATGTAAGAAAATAATTTTTAGCTTTAATAGAGAAAGACCCCTTTCGTGGCATTTTTGTAAATATAGGTATGTACCCCCAATTGCTCTCGCCTCTAAAACTCTCATGAATTGGGGGAACTGGGGGAACTTATATATGAGAAGTTCCTAAGGTTAGATCTGCCACGTGGCGGCCATCCGCTATAATATT

Gene Information

NCBI Accession YP_009506466.1
Location 228-977
Gene Name CP
Protein Name coat protein
Coding Region ATGCCTAAGCGGGATCCCTCATGGCGTTCGATGGCGGGAACCTCAAAGGTAAGCCGCTCCTCCAATTTCTCTCCTCGTGGAGGCCCAAAGATCAACAAGGCCTCCGAATGGGTAAACAGGCCCATGTACAGGAAGCCCAGGATATACAGGACGCTGAGAACTCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCTTACGAGCAACGTCACGATATTTCCCATGTGGGGAAAGTGATGTGTATATCTGATGTGACACGAGGTAACGGTATCACTCACCGTGTCGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTATAGGTAAGGTATGGATGGACGAGAACATCAAGCTCAAAAACCACACGAACAGTTGTATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGTACACCGATGGACTTTGGCCAAGTTTTCAACATGTTCGACAACGAGCCCAGTACTGCAACAGTAAAGAACGATCTCCGTGATCGTTATCAAGTCATGCACAAGTTCTACGCCAAGGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAGGCAGGGAAATACGAGAACCACACTGAAAACGCTCTGTTACTGTATATGGCATGTACACATGCCTCTAATCCTGTGTATGCGACCCTTAAAATCCGGATCTATTTTTATGATTCGGTTTCAAATTAA
Protein Sequence MPKRDPSWRSMAGTSKVSRSSNFSPRGGPKINKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYIIGKVWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009506467.1
Location 974-1372
Gene Name Ren
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAGTTCATCACTGCTCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTATATTTCAAGATCAACCATGTAGAAGACATCCTGTTCACAGGGACCAGAGTGTATCACAACCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCAGTGAAGGCTTCTGGGATGACATATTTACATAGATTTAGGCATTTAGTCATGTTGTATTTAGATCAATTAGGTGTAATCTCAATAAATAATGTTATTAGAGCTGTTCGTTTCGCGACGAACAGGCCTTATGTAAATCATGTACTGGAGAAGCATTCAATAAAATTCAAAATTTATTAA
Protein Sequence MDSRTGEFITAPQAENGVYIWEITNPLYFKINHVEDILFTGTRVYHNQIRFNHNLRRALGLHKAFLNFQVWTTSVKASGMTYLHRFRHLVMLYLDQLGVISINNVIRAVRFATNRPYVNHVLEKHSIKFKIY

NCBI Accession YP_009506468.1
Location 1119-1508
Gene Name Trap
Protein Name trans-activating protein
Coding Region ATGGTATTTTGGTCAACCTCACAACCCCTCTCTATCAAGGTTCAACACAGAGCGGCGAAGAAGAGGGCAACTCGCCGTAGAAGGATCGACCTAAATTGCGGGTGCTCCATATACGTCCACATCAACTGCCACAGCCATGGATTCACGCACAGGGGAGTTCATCACTGCTCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTATATTTCAAGATCAACCATGTAGAAGACATCCTGTTCACAGGGACCAGAGTGTATCACAACCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCAGTGAAGGCTTCTGGGATGACATATTTACATAG
Protein Sequence MVFWSTSQPLSIKVQHRAAKKRATRRRRIDLNCGCSIYVHINCHSHGFTHRGVHHCSSSREWRVYLGDNKSPIFQDQPCRRHPVHRDQSVSQPDTVQPQPQESVGSPQGIPELPSLDDISEGFWDDIFT

NCBI Accession YP_009506469.1
Location 1539-2552
Gene Name Rep
Protein Name replication-associated protein
Coding Region ATGCCACGAAAGGGGTCTTTCTCTATTAAAGCTAAAAATTATTTTCTTACATATCCTCAGTGCTCTCTTCCTAAAGAAGAAGCTCTCGAACAAATTAGGGTTATCCAAACGCCGGTCAACAAGAAATTCATCAAGGTTGCAAGAGAGCTACACGAAGATGGGCAGCCACATCTCCACGTTCTCGTTCAGTTCGAAGGGAAGTTCAACTGCACAAATAGCAGACTGTTCGACTTGGTATCCCCATCCAGGTCAACACATTTCCATCCGAACATACAGGGTGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGATGGTGATACAGTCGAATGGGGGACGTTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGACGTAGCCGCCGAAGCGTTGAATGCTGGAACAAAGGAGGAGGCGATGATGATTATCAAAGAAAAGATGCCGGAAAAGTTCCTCTTCCAGTACCATAACCTATCCAGTAACCTGGATAGAATTTTCAAAAAGGCTCCGGAGCCATGGACTCCTCCGTTTCCCCTCTCTTCTTTCACTAACGTTCCGGACGAGATGCAGTCTTGGGCTGATGACTATTTTGGGCTTGTCGTTTCCGCTGCGCGGCCAGAGAGGCCTGTGAGTATCATAATCGAAGGTGATAGTCGGACGGGGAAGACGATGTGGGCTAGAGCTTTAGGGGCCCATAATTATCTTAGTGGACACCTGGATTTCAATTCCAGGGTTTACTCGAACGAAGTGGATTATAACGTCATTGATGACGTCCCTCCGCATTACCTAAAGCTAAAGCACTGGAAAGAGTTGATTGGGGCCCAAAAAGACTGGCAATCAAATTGTAAATACGGAAAGCCAGTTCAAATTAAAGGTGGTATCCCATCAATCGTGCTCTGCAATCCAGGTGAGGGTTCCAGCTATAAAATCTCAATAATGTTTAGGAATCAAGGGAGGTTACGAGAGAAAGGAGTTTTTTGGGCAAAGAGGTAA
Protein Sequence MPRKGSFSIKAKNYFLTYPQCSLPKEEALEQIRVIQTPVNKKFIKVARELHEDGQPHLHVLVQFEGKFNCTNSRLFDLVSPSRSTHFHPNIQGAKSSSDVKSYVEKDGDTVEWGTFQIDGRSARGGQQTANDVAAEALNAGTKEEAMMIIKEKMPEKFLFQYHNLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEMQSWADDYFGLVVSAARPERPVSIIIEGDSRTGKTMWARALGAHNYLSGHLDFNSRVYSNEVDYNVIDDVPPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKISIMFRNQGRLREKGVFWAKR

NCBI Accession YP_009506470.1
Location 2153-2395
Gene Name AC4
Protein Name AC4
Coding Region ATGGGCAGCCACATCTCCACGTTCTCGTTCAGTTCGAAGGGAAGTTCAACTGCACAAATAGCAGACTGTTCGACTTGGTATCCCCATCCAGGTCAACACATTTCCATCCGAACATACAGGGTGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGATGGTGATACAGTCGAATGGGGGACGTTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGACGTAG
Protein Sequence MGSHISTFSFSSKGSSTAQIADCSTWYPHPGQHISIRTYRVLNPAPTSSPTSRKMVIQSNGGRSRSTEEVLEEVSRRLTT

References More References in PubMed

1

Assessment of Prickly Sida as a Potential Inoculum Source for Sida Golden Mosaic Virus in Commercial Snap Bean Farms in Georgia, United States.

Codod CB, et al.  Plant Dis. 2024 Jun;108(6):1776-1785. doi: 10.1094/PDIS-09-23-1901-RE. Epub 2024 Jun 6.

PMID: 38243178
2

First Report of Sida micrantha mosaic virus in Phaseolus vulgaris in Brazil.

Fernandes-Acioli NAN, et al.  Plant Dis. 2011 Sep;95(9):1196. doi: 10.1094/PDIS-05-10-0343.

PMID: 30732032
3

Sida micrantha mosaic is associated with a complex infection of begomoviruses different from Abutilon mosaic virus.

Jovel J, et al.  Arch Virol. 2004 Apr;149(4):829-41. doi: 10.1007/s00705-003-0235-1. Epub 2003 Dec 8.

PMID: 15045569
4

Molecular Characterization of Rhynchosia mosaic virus-Puerto Rico Associated with Symptomatic Rhynchosia minima and Cajanus cajan in Puerto Rico.

Idris AM, et al.  Plant Dis. 2002 May;86(5):558. doi: 10.1094/PDIS.2002.86.5.558C.

PMID: 30818684
5

Differential Transcriptional Responses in Two Old World Bemisia tabaci Cryptic Species Post Acquisition of Old and New World Begomoviruses.

Mugerwa H, et al.  Cells. 2022 Jun 29;11(13):2060. doi: 10.3390/cells11132060.

PMID: 35805143
6

Field Screen and Genotyping of Phaseolus vulgaris against Two Begomoviruses in Georgia, USA.

Agarwal G, et al.  Insects. 2021 Jan 10;12(1):49. doi: 10.3390/insects12010049.

PMID: 33435235
7

Molecular characterization and experimental host range of an isolate of Wissadula golden mosaic St. Thomas virus.

Collins AM, et al.  Virus Genes. 2009 Dec;39(3):387-95. doi: 10.1007/s11262-009-0401-y. Epub 2009 Sep 20.

PMID: 19768650
8

Macroptilium yellow mosaic virus, a New Begomovirus Infecting Macroptilium lathyroides in Cuba.

Ramos PL, et al.  Plant Dis. 2002 Sep;86(9):1049. doi: 10.1094/PDIS.2002.86.9.1049B.

PMID: 30818538
9

Complete sequence of a new bipartite begomovirus infecting Sida sp. in Northeastern Brazil.

Macedo MA, et al.  Arch Virol. 2020 Jan;165(1):253-256. doi: 10.1007/s00705-019-04458-9. Epub 2019 Nov 22.

PMID: 31758274
10

Molecular characterization and phylogenetic relationships of two new bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico.

Hernández-Zepeda C, et al.  Virus Genes. 2007 Oct;35(2):369-77. doi: 10.1007/s11262-007-0080-5. Epub 2007 Feb 15.

PMID: 17638064