Sida chlorotic mottle virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_003029395.1
Isolate Brazil
Release date 2018/8/26
Submitter Ferro,C.G., Silva,J.P., Xavier,C.A.D., Godinho,M.T., Lima,A.T.M., Mar,T.B., Lau,D., Zerbini,F.M.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038990
ACCGGATGGCCGCGATTTTTTCGCCCTCTAATCCGGCCCAGGCCCAAACGCAATCTCCGTACGGGGACCAGCCAGATAAAGACAAATAAAGACGTCCAATAGGAGCGCGTGTTGGAAGACTAGATATTTATTAACGACTTCGTCACTAAGTTGTTACTCTATATAAGAAAGTGACGTTTGTATATGCTTTAAATCAAAATGCCCAAGCGGGACGCTCCATGGCGCATAATGGCGGGGACCTCAAAGGTTTCCCGCTCTGTCAATTATTCACCCCGTGGTGGTCCTAAATTGGACAAGGCATCCGCTTGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATTTACCGCACTTTGAGAAGCCCAGACGTCCCTAAGGGATGTGAAGGCCCGTGCAAGGTCCAGTCATATGAGTCTCGTCATGACGTTTCCCATGTTGGCAAGGTGATCTGTGTGTCAGATGTTACACGTGGCAACGGTATTACTCACCGCGTGGGTAAGCGATTCTGCGTCAAGTCTGTGTATATATTAGGGAAGATCTGGATGGATGAGACCATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTTAGGGACCGGAGACCTTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCCACCGTTAAGAACGATCTTCGAGATCGTTTTCAGGTTTTGCACAAGTTCTACGCCAAGGTTACGGGTGGACAGTATGCCAGCAACGAGCAGGCTATCGTGAAGCGCTTCTGGAAGGTCAACAATTACGTGGTCTACAACCATCAGGAAGCAGGGAAATATGAGAATCATACTGAAAACGGTCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCTACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAAATTTGAATTTTATTTCATGATTCTCGAGTACATAATTTACATAATATTTGTCTGTTGCGAATCGAACAGCTCTTATTACATGGTTAAGTCCTATAACACCTATATTATCTAAATACATATTAACTAAATGCTTAAATCTATGTAAATATGTCGTCCCAGAAGCTCGAATCGAGGTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGTAGACCCAGCGCCTTCCTGACGTTGTGGTTGAACCGTATCTGGATGTGGTATATCCTTGTCATTGTGTATATCGGATCCTCCACATGGTCGATCCTGAAATAAAGGGGATTTGGAACCTCCCAGATAAAAACGGAATTCTCTGCCTGAGACACAGTGATGTTCTCCCCTGTGCGTGAATCCATGATTTGCGCAGTTGATGTGGAGGAAGATGGAACAGCCGCAATTGAGGTCAATGCGCTTACGACGAATTGCCCTCTTCTTCGCGATTTTGTGTTGTGGTTTGATAGAGGGGGGCGTCGAGGAAGATGAATTTCGCATTGTGTATTGTCCACGCTCTCAGTGAAGCATTTTCCTCTTTGTTGAGGAAGTCTTTATAGCTAGCCCCCTCGCCTGGATTGCATAGCACGATTGATGGAATGCCTCCTTTAATTTGAACTGGCTTTCCATATTTACAGTTGGACTGCCAGTCTTTTTGGGCCCCAATCAGCTCTTTCCAGTGCTTCATCTTTAGATATTGCGGGGCAACGTCATCAATGACGTTGTATTCCGCTTCATTTGAGTAAACCCTAGAATTGAAGTCTAGGTGTCCACTTAAATAATTATGTGGGCCTAATGCACGAGCCCACATCGTCTTTCCCGTTCTCGAATCACCCTCGACAATCAAACTAATAGGTCTGTCTGGCCGCGCAGCGGCACCCCTACCGAAATAATCATCAGCCCACTCTTGCATCTCATCCGGAACGGCAGTGAAGGTTGAGAGAAGAAACGGAGGAACCCACGGTTCTGGAGCCTTAGAGAAAATTCTGTCCAGGTTACTGGACAGATTGTGATATTGAAAGAGAAATTTCTCCGGCAGCTTCTCTCTTATTATTTGTAACGCCGCTTCTTTTGAAGGGGCGTTTAAGGCCTCTGCGGCAGCGTCGTTAGCTGTCTGGCAACCTCCTCTAGCACTTCTTCCGTCGATTTGGAATTCTCCCCATTCGAGGGTGTCACCGTCCTTGTCGATGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAGTCTCTGATTTGTGCACACGAATTTGCCTTCGAATTGGAGAAGCACGTGGAGGTGAGGTTGCCCATTTTCATGAAGCTCTCTGCATATTTTGATGAACTTCTTATTTGTTGGGGTGTTTAGGGCTTTTATTTGGGAAAGGGTTTCTTCCTTGGTTAATGTGCATAGGGGGTATGTGAGGAAATAATTTTTGGAAGAAATACGGAATCGTTTTGGAACGGATGGCATTTTTGTAATAATAGGGAAGTCACCAATTGATGTTTGCTCTCAAAGTGCTTATGAATTGGTGACATTGGTGACAATATATAGAAGTTCCATAAGGGGCAAAAGCGGCCATCCGTTCTAATATT

Gene Information

NCBI Accession YP_009508418.1
Location 199-948
Protein Name CP
Coding Region ATGCCCAAGCGGGACGCTCCATGGCGCATAATGGCGGGGACCTCAAAGGTTTCCCGCTCTGTCAATTATTCACCCCGTGGTGGTCCTAAATTGGACAAGGCATCCGCTTGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATTTACCGCACTTTGAGAAGCCCAGACGTCCCTAAGGGATGTGAAGGCCCGTGCAAGGTCCAGTCATATGAGTCTCGTCATGACGTTTCCCATGTTGGCAAGGTGATCTGTGTGTCAGATGTTACACGTGGCAACGGTATTACTCACCGCGTGGGTAAGCGATTCTGCGTCAAGTCTGTGTATATATTAGGGAAGATCTGGATGGATGAGACCATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTTAGGGACCGGAGACCTTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCCACCGTTAAGAACGATCTTCGAGATCGTTTTCAGGTTTTGCACAAGTTCTACGCCAAGGTTACGGGTGGACAGTATGCCAGCAACGAGCAGGCTATCGTGAAGCGCTTCTGGAAGGTCAACAATTACGTGGTCTACAACCATCAGGAAGCAGGGAAATATGAGAATCATACTGAAAACGGTCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCTACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA
Protein Sequence MPKRDAPWRIMAGTSKVSRSVNYSPRGGPKLDKASAWVNRPMYRKPRIYRTLRSPDVPKGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRFCVKSVYILGKIWMDETIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVLHKFYAKVTGGQYASNEQAIVKRFWKVNNYVVYNHQEAGKYENHTENGLLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_009508419.1
Location 945-1343
Protein Name REN
Coding Region ATGGATTCACGCACAGGGGAGAACATCACTGTGTCTCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAGGATCGACCATGTGGAGGATCCGATATACACAATGACAAGGATATACCACATCCAGATACGGTTCAACCACAACGTCAGGAAGGCGCTGGGTCTACACAAAGCCTACCTGAACTTCCAAGTCTGGACGACCTCGATTCGAGCTTCTGGGACGACATATTTACATAGATTTAAGCATTTAGTTAATATGTATTTAGATAATATAGGTGTTATAGGACTTAACCATGTAATAAGAGCTGTTCGATTCGCAACAGACAAATATTATGTAAATTATGTACTCGAGAATCATGAAATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGENITVSQAENSVFIWEVPNPLYFRIDHVEDPIYTMTRIYHIQIRFNHNVRKALGLHKAYLNFQVWTTSIRASGTTYLHRFKHLVNMYLDNIGVIGLNHVIRAVRFATDKYYVNYVLENHEIKFKFY

NCBI Accession YP_009508420.1
Location 1090-1479
Protein Name TRAP
Coding Region ATGCGAAATTCATCTTCCTCGACGCCCCCCTCTATCAAACCACAACACAAAATCGCGAAGAAGAGGGCAATTCGTCGTAAGCGCATTGACCTCAATTGCGGCTGTTCCATCTTCCTCCACATCAACTGCGCAAATCATGGATTCACGCACAGGGGAGAACATCACTGTGTCTCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAGGATCGACCATGTGGAGGATCCGATATACACAATGACAAGGATATACCACATCCAGATACGGTTCAACCACAACGTCAGGAAGGCGCTGGGTCTACACAAAGCCTACCTGAACTTCCAAGTCTGGACGACCTCGATTCGAGCTTCTGGGACGACATATTTACATAG
Protein Sequence MRNSSSSTPPSIKPQHKIAKKRAIRRKRIDLNCGCSIFLHINCANHGFTHRGEHHCVSGREFRFYLGGSKSPLFQDRPCGGSDIHNDKDIPHPDTVQPQRQEGAGSTQSLPELPSLDDLDSSFWDDIFT

NCBI Accession YP_009508421.1
Location 1400-2479
Protein Name Rep
Coding Region ATGCCATCCGTTCCAAAACGATTCCGTATTTCTTCCAAAAATTATTTCCTCACATACCCCCTATGCACATTAACCAAGGAAGAAACCCTTTCCCAAATAAAAGCCCTAAACACCCCAACAAATAAGAAGTTCATCAAAATATGCAGAGAGCTTCATGAAAATGGGCAACCTCACCTCCACGTGCTTCTCCAATTCGAAGGCAAATTCGTGTGCACAAATCAGAGACTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGACAAGGACGGTGACACCCTCGAATGGGGAGAATTCCAAATCGACGGAAGAAGTGCTAGAGGAGGTTGCCAGACAGCTAACGACGCTGCCGCAGAGGCCTTAAACGCCCCTTCAAAAGAAGCGGCGTTACAAATAATAAGAGAGAAGCTGCCGGAGAAATTTCTCTTTCAATATCACAATCTGTCCAGTAACCTGGACAGAATTTTCTCTAAGGCTCCAGAACCGTGGGTTCCTCCGTTTCTTCTCTCAACCTTCACTGCCGTTCCGGATGAGATGCAAGAGTGGGCTGATGATTATTTCGGTAGGGGTGCCGCTGCGCGGCCAGACAGACCTATTAGTTTGATTGTCGAGGGTGATTCGAGAACGGGAAAGACGATGTGGGCTCGTGCATTAGGCCCACATAATTATTTAAGTGGACACCTAGACTTCAATTCTAGGGTTTACTCAAATGAAGCGGAATACAACGTCATTGATGACGTTGCCCCGCAATATCTAAAGATGAAGCACTGGAAAGAGCTGATTGGGGCCCAAAAAGACTGGCAGTCCAACTGTAAATATGGAAAGCCAGTTCAAATTAAAGGAGGCATTCCATCAATCGTGCTATGCAATCCAGGCGAGGGGGCTAGCTATAAAGACTTCCTCAACAAAGAGGAAAATGCTTCACTGAGAGCGTGGACAATACACAATGCGAAATTCATCTTCCTCGACGCCCCCCTCTATCAAACCACAACACAAAATCGCGAAGAAGAGGGCAATTCGTCGTAA
Protein Sequence MPSVPKRFRISSKNYFLTYPLCTLTKEETLSQIKALNTPTNKKFIKICRELHENGQPHLHVLLQFEGKFVCTNQRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGCQTANDAAAEALNAPSKEAALQIIREKLPEKFLFQYHNLSSNLDRIFSKAPEPWVPPFLLSTFTAVPDEMQEWADDYFGRGAAARPDRPISLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDVAPQYLKMKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENASLRAWTIHNAKFIFLDAPLYQTTTQNREEEGNSS

NCBI Accession YP_009508422.1
Location 2062-2325
Protein Name AC4 protein
Coding Region ATGAAAATGGGCAACCTCACCTCCACGTGCTTCTCCAATTCGAAGGCAAATTCGTGTGCACAAATCAGAGACTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGACAAGGACGGTGACACCCTCGAATGGGGAGAATTCCAAATCGACGGAAGAAGTGCTAGAGGAGGTTGCCAGACAGCTAACGACGCTGCCGCAGAGGCCTTAA
Protein Sequence MKMGNLTSTCFSNSKANSCAQIRDSSTWYPQPGQHISIRTFRELNHRPTSSPTSTRTVTPSNGENSKSTEEVLEEVARQLTTLPQRP

References More References in PubMed

1

Preliminary identification and coat protein gene phylogenetic relationships of begomoviruses associated with native flora and cultivated plants from the Yucatan Peninsula of Mexico.

Hernández-Zepeda C, et al.  Virus Genes. 2007 Dec;35(3):825-33. doi: 10.1007/s11262-007-0149-1. Epub 2007 Aug 8.

PMID: 17682933
2

Tomato chlorotic leaf distortion virus, a new bipartite begomovirus infecting Solanum lycopersicum and Capsicum chinense in Venezuela.

Zambrano K, et al.  Arch Virol. 2011 Dec;156(12):2263-6. doi: 10.1007/s00705-011-1093-x. Epub 2011 Aug 19.

PMID: 21853328
3

Two new begomoviruses infecting tomato and Hibiscus sp. in the Amazon region of Brazil.

Quadros AFF, et al.  Arch Virol. 2019 Jul;164(7):1897-1901. doi: 10.1007/s00705-019-04245-6. Epub 2019 Apr 10.

PMID: 30972592
4

Complete sequence of a new bipartite begomovirus infecting Sida sp. in Northeastern Brazil.

Macedo MA, et al.  Arch Virol. 2020 Jan;165(1):253-256. doi: 10.1007/s00705-019-04458-9. Epub 2019 Nov 22.

PMID: 31758274