Sida chlorotic leaf virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_018587405.1
Isolate Mexico
Release date 2021/6/1
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055581
ACCGGATGGCCGCGCGATTTTTTCCCCCTCCTACGTGTCGCAATCTCCACCCTCCAAATCCCCCGCTCCCAATCCCCGCAAATTTCGGCCATGTGATTTAAAAATGACAAATAAAGGTGACCAATCACGTCTCGTCCTACGATACTAGATATTTGTGACTTTGGGACCAAGTTGTCGTATAAATGTACGTGCAATGTCATTTTTTCCTTTAATTCAAAATGCCTAAGCGGGACGCCCCATGGCGTACTATGGCGGGGACCTCAAAGGTTTCTCGCTCCGCCAATTATTCACCTCGTGGTGGATATGGGCCGAAATTCGACAAGGCCGCTGCTTGGGTTAACAGACCCATGTATAGGAAGCCCAGAATCTATCGGGCGCTTAGAGGACCTGACGTGCCTAAGGGTTGTGAAGGGCCTTGTAAGGTTCAATCCTTTGAACAGCGTCATGATATTTCCCATGTTGGTAAGGTCATGTGTATATCTGATGTCACACGTGGTAATGGTATTACCCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTCTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAACAGCGTCATGTTTTGGTTGGTCAGAGACAGAAGACCCTATGGCACCCCTATGGATTTTGGTCAAGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCTACGGTGAAGAACGATCTTCGTGATCGTTTTCAGGTCATGCACAGGTTCTATGCTAAGGTGACTGGTGGTCAATATGCTAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAGAGTCAACACTCATGTTGTCTATAACCACCAGGAAGCCGCTAAGTACGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCAACATTGAAAATTCGGATCTATTTTTATGATTCGATCAGCAATTAATAAAATAAGAATTTTATTTCATGATTCTCAAGTACATCATTTACATATGATCTGTCTGTCGCGAAGCGAACAGCTCGAATAACATTATTAATTGAAATAACGCCTATATTGTCTAAGTACAACATGACTAAGCGACTAAATCTATTTAAATACGTCGTCCCAGAAACTCGAAGCAATGTCGTCCAGACTTGGAAATTCAGGAAGGCTTTGTGTAGACCCAGTGCCCTCCTCAGGTTGTGGTTGAACCTTATCTGGACATGATATATTGTGATCAGGGAGAACGGTGGAACCTCCACCTGGTTTATCTTGAAATAGAGGGGATTTGGAACCTCCCAGATAAAAACGCCACTCTCTGCTTGATGCGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGATTGACGCAATTGATGTGCAGGAATATGGAACAGCCGCAGTTCAGGTCCAACCGTCTACGACGAACAGCCCTTCTCTTGGCTCGTCTATGTTGTGCTTTGATAGAGGGGGGCGTTGATGGTGACGAATTTCGCATTATGAAGCGTCCACGCTTTTAGTGATGCGTTTTCTTCTTTGTCTAGGAAGTGTTTATAAGAAGCCCCCTCTCCCGGGTTACAAAGCACAATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCTCTTTGGGACCCTATTAGCTCTTTCCAGTGCTTTAGTTTGAGATAATGTGGACTAACGTCATCAATGACGTTATACTCCACTTCATTTGAATAGACTCGAGGATTGAAGTCCAGGTGTCCAGACAAGTAATTATGAGAACCTAAAGCACGAGCCCACATCGTTTTTCCCGTCCTTGAATCACCTTCAATGATGATGCTAATAGGTCTCTCCGGCCGCGCAGCGGCATCTTTCCCGAAATAGTCATCTGCCCACCTTTGCATCTCCACTGGGACGTTAGTGAATGTGGAGAGTTGAAACGGAGGAGTCCATGGCTCCGGAGCCTTACTGAATATCCTGTCGAGGTTACTCGATAGGTTATGAAACTGAAATAAAAACTTTTCCGGAAGTTTTTCTTTGATTATCCTCATTGCCTCCTCCTTTGTTCCAGAATTTAACGCCTCGGCGGCTGCGTCGTTAGATGTCTGCTGACCGCCGCGAGCACTTCTTCCGTCGATCTGGAACACCCCCCATTCGATGGTGTCACCGTCTTTCTCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCTTGTATGTTTGGGTGGAAATGGGCAGACCTGGTTGAGGACACCATATCGAATAATCTGTTATTTGTGCAGTTGAACTTCCCTTCGAACTGTATAAGCACATGGATATGAGGCTGCCCATCTTCATGAAACTCCCTGCAGACCTTGATAAATTTCTTATTCGTGGGAGTTTTGATGTTCCTGAGTTGTTCCAGTGCCTCCTCTTTCTTAAGAGAGCACTGGGGATAAGTGAGAAAATAGTTTTTGGCTTTAATAGAGAAAGAACCCTTCCGTGGCATTGTCGTAAATAATGATGTTCCCCCGATAGCTCTCTCGCTCAAAACTTCCTATGAATCGGGGGAACTGGGGGAACTTATATAGTAGAGCTCCTTAAAGCCAAATCAACACGTGGCGGCCATCCGTTATAATATT

Gene Information

NCBI Accession YP_010087776.1
Location 219-974
Gene Name AV1
Protein Name coat protein
Coding Region ATGCCTAAGCGGGACGCCCCATGGCGTACTATGGCGGGGACCTCAAAGGTTTCTCGCTCCGCCAATTATTCACCTCGTGGTGGATATGGGCCGAAATTCGACAAGGCCGCTGCTTGGGTTAACAGACCCATGTATAGGAAGCCCAGAATCTATCGGGCGCTTAGAGGACCTGACGTGCCTAAGGGTTGTGAAGGGCCTTGTAAGGTTCAATCCTTTGAACAGCGTCATGATATTTCCCATGTTGGTAAGGTCATGTGTATATCTGATGTCACACGTGGTAATGGTATTACCCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTCTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAACAGCGTCATGTTTTGGTTGGTCAGAGACAGAAGACCCTATGGCACCCCTATGGATTTTGGTCAAGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCTACGGTGAAGAACGATCTTCGTGATCGTTTTCAGGTCATGCACAGGTTCTATGCTAAGGTGACTGGTGGTCAATATGCTAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAGAGTCAACACTCATGTTGTCTATAACCACCAGGAAGCCGCTAAGTACGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCAACATTGAAAATTCGGATCTATTTTTATGATTCGATCAGCAATTAA
Protein Sequence MPKRDAPWRTMAGTSKVSRSANYSPRGGYGPKFDKAAAWVNRPMYRKPRIYRALRGPDVPKGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWRVNTHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN

NCBI Accession YP_010087777.1
Location 552-869
Gene Name AC5
Protein Name putative AC5 protein
Coding Region ATGATTCTCGTACTTAGCGGCTTCCTGGTGGTTATAGACAACATGAGTGTTGACTCTCCAGAATCGCCTAACCAATGCCTGCTCGTTGCTAGCATATTGACCACCAGTCACCTTAGCATAGAACCTGTGCATGACCTGAAAACGATCACGAAGATCGTTCTTCACCGTAGCAGTACTGGGCTCGTTGTCGAACATGTTGAACACTTGACCAAAATCCATAGGGGTGCCATAGGGTCTTCTGTCTCTGACCAACCAAAACATGACGCTGTTCGTGTGGTTCTTCAGCTTGATGTTCTCGTCCATCCATATCTTACCTAG
Protein Sequence MILVLSGFLVVIDNMSVDSPESPNQCLLVASILTTSHLSIEPVHDLKTITKIVLHRSSTGLVVEHVEHLTKIHRGAIGSSVSDQPKHDAVRVVLQLDVLVHPYLT

NCBI Accession YP_010087778.1
Location 971-1369
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACAATATATCATGTCCAGATAAGGTTCAACCACAACCTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAGATTTAGTCGCTTAGTCATGTTGTACTTAGACAATATAGGCGTTATTTCAATTAATAATGTTATTCGAGCTGTTCGCTTCGCGACAGACAGATCATATGTAAATGATGTACTTGAGAATCATGAAATAAAATTCTTATTTTATTAA
Protein Sequence MDSRTGEPITAHQAESGVFIWEVPNPLYFKINQVEVPPFSLITIYHVQIRFNHNLRRALGLHKAFLNFQVWTTLLRVSGTTYLNRFSRLVMLYLDNIGVISINNVIRAVRFATDRSYVNDVLENHEIKFLFY

NCBI Accession YP_010087779.1
Location 1116-1505
Gene Name AC2
Protein Name transactivator protein
Coding Region ATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAGACGAGCCAAGAGAAGGGCTGTTCGTCGTAGACGGTTGGACCTGAACTGCGGCTGTTCCATATTCCTGCACATCAATTGCGTCAATCATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACAATATATCATGTCCAGATAAGGTTCAACCACAACCTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAG
Protein Sequence MRNSSPSTPPSIKAQHRRAKRRAVRRRRLDLNCGCSIFLHINCVNHGFTHRGTHHCASSREWRFYLGGSKSPLFQDKPGGGSTVLPDHNISCPDKVQPQPEEGTGSTQSLPEFPSLDDIASSFWDDVFK

NCBI Accession YP_010087780.1
Location 1456-2502
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGCCACGGAAGGGTTCTTTCTCTATTAAAGCCAAAAACTATTTTCTCACTTATCCCCAGTGCTCTCTTAAGAAAGAGGAGGCACTGGAACAACTCAGGAACATCAAAACTCCCACGAATAAGAAATTTATCAAGGTCTGCAGGGAGTTTCATGAAGATGGGCAGCCTCATATCCATGTGCTTATACAGTTCGAAGGGAAGTTCAACTGCACAAATAACAGATTATTCGATATGGTGTCCTCAACCAGGTCTGCCCATTTCCACCCAAACATACAAGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGACGGTGACACCATCGAATGGGGGGTGTTCCAGATCGACGGAAGAAGTGCTCGCGGCGGTCAGCAGACATCTAACGACGCAGCCGCCGAGGCGTTAAATTCTGGAACAAAGGAGGAGGCAATGAGGATAATCAAAGAAAAACTTCCGGAAAAGTTTTTATTTCAGTTTCATAACCTATCGAGTAACCTCGACAGGATATTCAGTAAGGCTCCGGAGCCATGGACTCCTCCGTTTCAACTCTCCACATTCACTAACGTCCCAGTGGAGATGCAAAGGTGGGCAGATGACTATTTCGGGAAAGATGCCGCTGCGCGGCCGGAGAGACCTATTAGCATCATCATTGAAGGTGATTCAAGGACGGGAAAAACGATGTGGGCTCGTGCTTTAGGTTCTCATAATTACTTGTCTGGACACCTGGACTTCAATCCTCGAGTCTATTCAAATGAAGTGGAGTATAACGTCATTGATGACGTTAGTCCACATTATCTCAAACTAAAGCACTGGAAAGAGCTAATAGGGTCCCAAAGAGACTGGCAGTCCAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGAGGTATCCCATCAATTGTGCTTTGTAACCCGGGAGAGGGGGCTTCTTATAAACACTTCCTAGACAAAGAAGAAAACGCATCACTAAAAGCGTGGACGCTTCATAATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAG
Protein Sequence MPRKGSFSIKAKNYFLTYPQCSLKKEEALEQLRNIKTPTNKKFIKVCREFHEDGQPHIHVLIQFEGKFNCTNNRLFDMVSSTRSAHFHPNIQGAKSSSDVKSYVEKDGDTIEWGVFQIDGRSARGGQQTSNDAAAEALNSGTKEEAMRIIKEKLPEKFLFQFHNLSSNLDRIFSKAPEPWTPPFQLSTFTNVPVEMQRWADDYFGKDAAARPERPISIIIEGDSRTGKTMWARALGSHNYLSGHLDFNPRVYSNEVEYNVIDDVSPHYLKLKHWKELIGSQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKHFLDKEENASLKAWTLHNAKFVTINAPLYQSTT

NCBI Accession YP_010087781.1
Location 2088-2351
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAAGATGGGCAGCCTCATATCCATGTGCTTATACAGTTCGAAGGGAAGTTCAACTGCACAAATAACAGATTATTCGATATGGTGTCCTCAACCAGGTCTGCCCATTTCCACCCAAACATACAAGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGACGGTGACACCATCGAATGGGGGGTGTTCCAGATCGACGGAAGAAGTGCTCGCGGCGGTCAGCAGACATCTAACGACGCAGCCGCCGAGGCGTTAA
Protein Sequence MKMGSLISMCLYSSKGSSTAQITDYSIWCPQPGLPISTQTYKELNPAPTSSPTSRKTVTPSNGGCSRSTEEVLAAVSRHLTTQPPRR

References More References in PubMed

1

Sida chlorotic leaf virus: a new recombinant begomovirus found in non-cultivated plants and Cucumis sativus L.

García-Rodríguez DA, et al.  PeerJ. 2023 Mar 22;11:e15047. doi: 10.7717/peerj.15047. eCollection 2023.

PMID: 36974135
2

Tomato chlorotic leaf distortion virus, a new bipartite begomovirus infecting Solanum lycopersicum and Capsicum chinense in Venezuela.

Zambrano K, et al.  Arch Virol. 2011 Dec;156(12):2263-6. doi: 10.1007/s00705-011-1093-x. Epub 2011 Aug 19.

PMID: 21853328
3

First Report of Sida micrantha mosaic virus in Phaseolus vulgaris in Brazil.

Fernandes-Acioli NAN, et al.  Plant Dis. 2011 Sep;95(9):1196. doi: 10.1094/PDIS-05-10-0343.

PMID: 30732032
4

Two new begomoviruses infecting tomato and Hibiscus sp. in the Amazon region of Brazil.

Quadros AFF, et al.  Arch Virol. 2019 Jul;164(7):1897-1901. doi: 10.1007/s00705-019-04245-6. Epub 2019 Apr 10.

PMID: 30972592
5

Complete genome sequence of a new bipartite begomovirus infecting tomato in Brazil.

Rego-Machado CM, et al.  Arch Virol. 2019 Nov;164(11):2873-2875. doi: 10.1007/s00705-019-04380-0. Epub 2019 Aug 20.

PMID: 31432269
6

Preliminary identification and coat protein gene phylogenetic relationships of begomoviruses associated with native flora and cultivated plants from the Yucatan Peninsula of Mexico.

Hernández-Zepeda C, et al.  Virus Genes. 2007 Dec;35(3):825-33. doi: 10.1007/s11262-007-0149-1. Epub 2007 Aug 8.

PMID: 17682933
7

Complete sequence of a new bipartite begomovirus infecting Sida sp. in Northeastern Brazil.

Macedo MA, et al.  Arch Virol. 2020 Jan;165(1):253-256. doi: 10.1007/s00705-019-04458-9. Epub 2019 Nov 22.

PMID: 31758274