Sida chlorotic leaf virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTCCCCCTCCTACGTGTCGCAATCTCCACCCTCCAAATCCCCCGCTCCCAATCCCCGCAAATTTCGGCCATGTGATTTAAAAATGACAAATAAAGGTGACCAATCACGTCTCGTCCTACGATACTAGATATTTGTGACTTTGGGACCAAGTTGTCGTATAAATGTACGTGCAATGTCATTTTTTCCTTTAATTCAAAATGCCTAAGCGGGACGCCCCATGGCGTACTATGGCGGGGACCTCAAAGGTTTCTCGCTCCGCCAATTATTCACCTCGTGGTGGATATGGGCCGAAATTCGACAAGGCCGCTGCTTGGGTTAACAGACCCATGTATAGGAAGCCCAGAATCTATCGGGCGCTTAGAGGACCTGACGTGCCTAAGGGTTGTGAAGGGCCTTGTAAGGTTCAATCCTTTGAACAGCGTCATGATATTTCCCATGTTGGTAAGGTCATGTGTATATCTGATGTCACACGTGGTAATGGTATTACCCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTCTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAACAGCGTCATGTTTTGGTTGGTCAGAGACAGAAGACCCTATGGCACCCCTATGGATTTTGGTCAAGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCTACGGTGAAGAACGATCTTCGTGATCGTTTTCAGGTCATGCACAGGTTCTATGCTAAGGTGACTGGTGGTCAATATGCTAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAGAGTCAACACTCATGTTGTCTATAACCACCAGGAAGCCGCTAAGTACGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCAACATTGAAAATTCGGATCTATTTTTATGATTCGATCAGCAATTAATAAAATAAGAATTTTATTTCATGATTCTCAAGTACATCATTTACATATGATCTGTCTGTCGCGAAGCGAACAGCTCGAATAACATTATTAATTGAAATAACGCCTATATTGTCTAAGTACAACATGACTAAGCGACTAAATCTATTTAAATACGTCGTCCCAGAAACTCGAAGCAATGTCGTCCAGACTTGGAAATTCAGGAAGGCTTTGTGTAGACCCAGTGCCCTCCTCAGGTTGTGGTTGAACCTTATCTGGACATGATATATTGTGATCAGGGAGAACGGTGGAACCTCCACCTGGTTTATCTTGAAATAGAGGGGATTTGGAACCTCCCAGATAAAAACGCCACTCTCTGCTTGATGCGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGATTGACGCAATTGATGTGCAGGAATATGGAACAGCCGCAGTTCAGGTCCAACCGTCTACGACGAACAGCCCTTCTCTTGGCTCGTCTATGTTGTGCTTTGATAGAGGGGGGCGTTGATGGTGACGAATTTCGCATTATGAAGCGTCCACGCTTTTAGTGATGCGTTTTCTTCTTTGTCTAGGAAGTGTTTATAAGAAGCCCCCTCTCCCGGGTTACAAAGCACAATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCTCTTTGGGACCCTATTAGCTCTTTCCAGTGCTTTAGTTTGAGATAATGTGGACTAACGTCATCAATGACGTTATACTCCACTTCATTTGAATAGACTCGAGGATTGAAGTCCAGGTGTCCAGACAAGTAATTATGAGAACCTAAAGCACGAGCCCACATCGTTTTTCCCGTCCTTGAATCACCTTCAATGATGATGCTAATAGGTCTCTCCGGCCGCGCAGCGGCATCTTTCCCGAAATAGTCATCTGCCCACCTTTGCATCTCCACTGGGACGTTAGTGAATGTGGAGAGTTGAAACGGAGGAGTCCATGGCTCCGGAGCCTTACTGAATATCCTGTCGAGGTTACTCGATAGGTTATGAAACTGAAATAAAAACTTTTCCGGAAGTTTTTCTTTGATTATCCTCATTGCCTCCTCCTTTGTTCCAGAATTTAACGCCTCGGCGGCTGCGTCGTTAGATGTCTGCTGACCGCCGCGAGCACTTCTTCCGTCGATCTGGAACACCCCCCATTCGATGGTGTCACCGTCTTTCTCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCTTGTATGTTTGGGTGGAAATGGGCAGACCTGGTTGAGGACACCATATCGAATAATCTGTTATTTGTGCAGTTGAACTTCCCTTCGAACTGTATAAGCACATGGATATGAGGCTGCCCATCTTCATGAAACTCCCTGCAGACCTTGATAAATTTCTTATTCGTGGGAGTTTTGATGTTCCTGAGTTGTTCCAGTGCCTCCTCTTTCTTAAGAGAGCACTGGGGATAAGTGAGAAAATAGTTTTTGGCTTTAATAGAGAAAGAACCCTTCCGTGGCATTGTCGTAAATAATGATGTTCCCCCGATAGCTCTCTCGCTCAAAACTTCCTATGAATCGGGGGAACTGGGGGAACTTATATAGTAGAGCTCCTTAAAGCCAAATCAACACGTGGCGGCCATCCGTTATAATATT
Gene Information
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NCBI Accession
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YP_010087776.1
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Location
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219-974 |
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Gene Name
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AV1 |
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Protein Name
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coat protein |
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Coding Region
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ATGCCTAAGCGGGACGCCCCATGGCGTACTATGGCGGGGACCTCAAAGGTTTCTCGCTCCGCCAATTATTCACCTCGTGGTGGATATGGGCCGAAATTCGACAAGGCCGCTGCTTGGGTTAACAGACCCATGTATAGGAAGCCCAGAATCTATCGGGCGCTTAGAGGACCTGACGTGCCTAAGGGTTGTGAAGGGCCTTGTAAGGTTCAATCCTTTGAACAGCGTCATGATATTTCCCATGTTGGTAAGGTCATGTGTATATCTGATGTCACACGTGGTAATGGTATTACCCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTCTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAACAGCGTCATGTTTTGGTTGGTCAGAGACAGAAGACCCTATGGCACCCCTATGGATTTTGGTCAAGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCTACGGTGAAGAACGATCTTCGTGATCGTTTTCAGGTCATGCACAGGTTCTATGCTAAGGTGACTGGTGGTCAATATGCTAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAGAGTCAACACTCATGTTGTCTATAACCACCAGGAAGCCGCTAAGTACGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCAACATTGAAAATTCGGATCTATTTTTATGATTCGATCAGCAATTAA |
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Protein Sequence
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MPKRDAPWRTMAGTSKVSRSANYSPRGGYGPKFDKAAAWVNRPMYRKPRIYRALRGPDVPKGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWRVNTHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN |
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NCBI Accession
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YP_010087777.1
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Location
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552-869 |
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Gene Name
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AC5 |
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Protein Name
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putative AC5 protein |
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Coding Region
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ATGATTCTCGTACTTAGCGGCTTCCTGGTGGTTATAGACAACATGAGTGTTGACTCTCCAGAATCGCCTAACCAATGCCTGCTCGTTGCTAGCATATTGACCACCAGTCACCTTAGCATAGAACCTGTGCATGACCTGAAAACGATCACGAAGATCGTTCTTCACCGTAGCAGTACTGGGCTCGTTGTCGAACATGTTGAACACTTGACCAAAATCCATAGGGGTGCCATAGGGTCTTCTGTCTCTGACCAACCAAAACATGACGCTGTTCGTGTGGTTCTTCAGCTTGATGTTCTCGTCCATCCATATCTTACCTAG |
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Protein Sequence
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MILVLSGFLVVIDNMSVDSPESPNQCLLVASILTTSHLSIEPVHDLKTITKIVLHRSSTGLVVEHVEHLTKIHRGAIGSSVSDQPKHDAVRVVLQLDVLVHPYLT |
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NCBI Accession
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YP_010087778.1
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Location
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971-1369 |
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Gene Name
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AC3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACAATATATCATGTCCAGATAAGGTTCAACCACAACCTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAGATTTAGTCGCTTAGTCATGTTGTACTTAGACAATATAGGCGTTATTTCAATTAATAATGTTATTCGAGCTGTTCGCTTCGCGACAGACAGATCATATGTAAATGATGTACTTGAGAATCATGAAATAAAATTCTTATTTTATTAA |
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Protein Sequence
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MDSRTGEPITAHQAESGVFIWEVPNPLYFKINQVEVPPFSLITIYHVQIRFNHNLRRALGLHKAFLNFQVWTTLLRVSGTTYLNRFSRLVMLYLDNIGVISINNVIRAVRFATDRSYVNDVLENHEIKFLFY |
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NCBI Accession
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YP_010087779.1
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Location
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1116-1505 |
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Gene Name
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AC2 |
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Protein Name
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transactivator protein |
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Coding Region
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ATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAGACGAGCCAAGAGAAGGGCTGTTCGTCGTAGACGGTTGGACCTGAACTGCGGCTGTTCCATATTCCTGCACATCAATTGCGTCAATCATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACAATATATCATGTCCAGATAAGGTTCAACCACAACCTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAG |
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Protein Sequence
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MRNSSPSTPPSIKAQHRRAKRRAVRRRRLDLNCGCSIFLHINCVNHGFTHRGTHHCASSREWRFYLGGSKSPLFQDKPGGGSTVLPDHNISCPDKVQPQPEEGTGSTQSLPEFPSLDDIASSFWDDVFK |
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NCBI Accession
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YP_010087780.1
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Location
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1456-2502 |
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Gene Name
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AC1 |
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Protein Name
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replication-associated protein |
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Coding Region
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ATGCCACGGAAGGGTTCTTTCTCTATTAAAGCCAAAAACTATTTTCTCACTTATCCCCAGTGCTCTCTTAAGAAAGAGGAGGCACTGGAACAACTCAGGAACATCAAAACTCCCACGAATAAGAAATTTATCAAGGTCTGCAGGGAGTTTCATGAAGATGGGCAGCCTCATATCCATGTGCTTATACAGTTCGAAGGGAAGTTCAACTGCACAAATAACAGATTATTCGATATGGTGTCCTCAACCAGGTCTGCCCATTTCCACCCAAACATACAAGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGACGGTGACACCATCGAATGGGGGGTGTTCCAGATCGACGGAAGAAGTGCTCGCGGCGGTCAGCAGACATCTAACGACGCAGCCGCCGAGGCGTTAAATTCTGGAACAAAGGAGGAGGCAATGAGGATAATCAAAGAAAAACTTCCGGAAAAGTTTTTATTTCAGTTTCATAACCTATCGAGTAACCTCGACAGGATATTCAGTAAGGCTCCGGAGCCATGGACTCCTCCGTTTCAACTCTCCACATTCACTAACGTCCCAGTGGAGATGCAAAGGTGGGCAGATGACTATTTCGGGAAAGATGCCGCTGCGCGGCCGGAGAGACCTATTAGCATCATCATTGAAGGTGATTCAAGGACGGGAAAAACGATGTGGGCTCGTGCTTTAGGTTCTCATAATTACTTGTCTGGACACCTGGACTTCAATCCTCGAGTCTATTCAAATGAAGTGGAGTATAACGTCATTGATGACGTTAGTCCACATTATCTCAAACTAAAGCACTGGAAAGAGCTAATAGGGTCCCAAAGAGACTGGCAGTCCAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGAGGTATCCCATCAATTGTGCTTTGTAACCCGGGAGAGGGGGCTTCTTATAAACACTTCCTAGACAAAGAAGAAAACGCATCACTAAAAGCGTGGACGCTTCATAATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAG |
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Protein Sequence
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MPRKGSFSIKAKNYFLTYPQCSLKKEEALEQLRNIKTPTNKKFIKVCREFHEDGQPHIHVLIQFEGKFNCTNNRLFDMVSSTRSAHFHPNIQGAKSSSDVKSYVEKDGDTIEWGVFQIDGRSARGGQQTSNDAAAEALNSGTKEEAMRIIKEKLPEKFLFQFHNLSSNLDRIFSKAPEPWTPPFQLSTFTNVPVEMQRWADDYFGKDAAARPERPISIIIEGDSRTGKTMWARALGSHNYLSGHLDFNPRVYSNEVEYNVIDDVSPHYLKLKHWKELIGSQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKHFLDKEENASLKAWTLHNAKFVTINAPLYQSTT |
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NCBI Accession
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YP_010087781.1
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Location
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2088-2351 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGAAGATGGGCAGCCTCATATCCATGTGCTTATACAGTTCGAAGGGAAGTTCAACTGCACAAATAACAGATTATTCGATATGGTGTCCTCAACCAGGTCTGCCCATTTCCACCCAAACATACAAGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGACGGTGACACCATCGAATGGGGGGTGTTCCAGATCGACGGAAGAAGTGCTCGCGGCGGTCAGCAGACATCTAACGACGCAGCCGCCGAGGCGTTAA |
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Protein Sequence
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MKMGSLISMCLYSSKGSSTAQITDYSIWCPQPGLPISTQTYKELNPAPTSSPTSRKTVTPSNGGCSRSTEEVLAAVSRHLTTQPPRR |