Senna leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_001706945.1 |
| Isolate |
India |
| Release date |
2016/8/18 |
| Submitter |
Kumar,J., Alok,A., Tuli,R. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTAGTGCTCCGCAATCTCTCATCCTCCAATCATAACTCTCGCTGAAAGCTTAAATAATAGTATAATGCATTATAAGTACTTAGTCTCCAAGTTTCTCTTTGCACCATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTATGCCCGTGCCGCTGTCCCTCAGATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATTTACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGGTGTGAGGGTCCGTGTAAGGTCCAGTCATTCGAGTCTAGACATGATGTAGTTCACATTGGTAAAGTTATGTGTATTAGTGATGTAACTAGGGGTACTGGTTTAACGCATAGGGTAGGTAAGCGTTTCTGTGTTAAGTCCGTCTATGTGTTAGGGAAGATATGGATGGATGAGAATATCAAGACTAAGAACCACACTAACAATGTAATGTTCTTTCTGGTACGTGACCGTCGTCCTGTTGACAAGCCTCAGGATTTTGGCGAGGTCTTCAACATGTTTGACAACGAGCCAAGTACTGCAACTGTGAAGAATGTTCATCGTGACCGTTATCAGGTTCTTCGTAAATGGCATGCTACGGTTACCGGTGGGCAGTATGCTGCTAAAGAACAAGCTCTCGTGAAGAAGTTTATTAGGGTTAACAATTATGTCGTTTATAACCAGCAAGAAGCTGGCAAGTATGAGAACCATAGTGAGAATGCTTTGATGTTGTACATGGCATGCACCCATGCCTCCAATCCAGTGTATGCAACTCTAAAGATACGAATCTATTTCTACGATTCGGTCACCAATTAATAAAGATTTAGTTTTATTATCATTGAACTTTGTACATATATTGTTTGCGTTAATACATTCCACAGTACATGATTCACTGCCCTAATTACATTGTTTATGCTAATTACACCCAAACTATCTATAAATTTCAAAACTTGGGTCCTAAATACCCTTAAGAAACGACCAATCTGAAGGTGTGAGGTCGTCCAGATGCGGAAGGTTAGGAAACATTGGTGAATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAACTGTATTCTTGCCGTTATTATGTCGTGGTTCGACAGAAAAGGCCTGCTGTGGTGGTCTGTCATCTTGAAATATAGGGGATTTGGAACCGTCCAGATAAATGCGCCATTCTCGGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGTAAATCCATGGTTGTGGCAGCCAATGGCCAGGAAATAGGAGCACCCACAATCAAGGTCCACTCTCCTCCGTCGGAACCTCTTCTTGGCTCTGTTGTGCTGAACTTTGATGGGTACCTGAGTAGAGTGGGCTCCTGAGGGTGACGAAGATCGCATTTCTTTGAGCCCAATTTTTGAGTGCGATGTTCTTTTCCTCGTCTAAGTACTCTTTATAGCTCGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTACTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCATGACTCGTTGCTGTACACTTTAGGACTCAGATCTAGGTGTCCACAAAGGTAATTATGCGGACCCAATGACCTGGCCCACATCGTCTTCCCCGTCCGACTATCACCCTCAACGACAATGCTCACCGGTCTCAGGGGCCGCGCAGCGGCATCGACAACATTTTCTGCAGCCCACTCTTCGAGTTCTTCTGGAACTCGATCAAAAGAAGAAGAAGAAAAAGGAGAAATATAAACCTCCAACGGAGGTGTAAAAATCTTCTCTAAATTGGCATTTAAATTATGATATTGTAATACAAAGTCTTTAGGGGCTAGCTCCCTAAGTATTCTAAGAGCTTCCGACTTGCTTCCCGCGTTAAGTGCTGCTGCGTAAGCGTCGTTTGCTGTTTGCTGTCCCCCTCTTGCAGATCTTCCGTCGACCTGGAACTCTCCCCATTCGATTGTGTCTCCGTCCTTATCGATATAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGATGGGGATACCAAGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCTTCGAACTGGATGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGCATTTCCCTGCAGATCTTGATGAATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAATTGGGAAAGTGCTTGTTCTTTGGTGAGGGAACATTTGGGATACGTTATAAAATAATTCTTCGAATTTATAAGAAAACGTTTGGGAGGCATGTTGACTATATAGAGGACCCGATTGACCGCTCTTGCAACTCTCCCCTGTATATTGGGTCTCAATATATAGTGAGACCCAAATGGCACGCTCGTAATTTTTTAGTGAAACTCAAAAATCTAACGCTCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009270636.1
|
|
Location
|
127-486 |
|
Gene Name
|
AV2 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTATGCCCGTGCCGCTGTCCCTCAGATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATTTACAGAATGTACAGAAGTCCGGATGTTCCTAA |
|
Protein Sequence
|
MWDPLLNQFPETVFGLRCMLAVKYLQLVERTYSPDTVGYELIRDLISVVRARKYAEATTRYEHFNARMESTPSVELRQPVCPCRCPSDCPRHLKVSGVGQQAHEQEAQDLQNVQKSGCS |
|
NCBI Accession
|
YP_009270637.1
|
|
Location
|
287-1060 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTATGCCCGTGCCGCTGTCCCTCAGATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATTTACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGGTGTGAGGGTCCGTGTAAGGTCCAGTCATTCGAGTCTAGACATGATGTAGTTCACATTGGTAAAGTTATGTGTATTAGTGATGTAACTAGGGGTACTGGTTTAACGCATAGGGTAGGTAAGCGTTTCTGTGTTAAGTCCGTCTATGTGTTAGGGAAGATATGGATGGATGAGAATATCAAGACTAAGAACCACACTAACAATGTAATGTTCTTTCTGGTACGTGACCGTCGTCCTGTTGACAAGCCTCAGGATTTTGGCGAGGTCTTCAACATGTTTGACAACGAGCCAAGTACTGCAACTGTGAAGAATGTTCATCGTGACCGTTATCAGGTTCTTCGTAAATGGCATGCTACGGTTACCGGTGGGCAGTATGCTGCTAAAGAACAAGCTCTCGTGAAGAAGTTTATTAGGGTTAACAATTATGTCGTTTATAACCAGCAAGAAGCTGGCAAGTATGAGAACCATAGTGAGAATGCTTTGATGTTGTACATGGCATGCACCCATGCCTCCAATCCAGTGTATGCAACTCTAAAGATACGAATCTATTTCTACGATTCGGTCACCAATTAA |
|
Protein Sequence
|
MPKRPLDMSISTPGWKVRRRLNFDSPYARAAVPQIVPVISKSRAWANRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYAAKEQALVKKFIRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_009270638.1
|
|
Location
|
638-994 |
|
Gene Name
|
AC5 |
|
Protein Name
|
ac5 |
|
Coding Region
|
ATGGGTGCATGCCATGTACAACATCAAAGCATTCTCACTATGGTTCTCATACTTGCCAGCTTCTTGCTGGTTATAAACGACATAATTGTTAACCCTAATAAACTTCTTCACGAGAGCTTGTTCTTTAGCAGCATACTGCCCACCGGTAACCGTAGCATGCCATTTACGAAGAACCTGATAACGGTCACGATGAACATTCTTCACAGTTGCAGTACTTGGCTCGTTGTCAAACATGTTGAAGACCTCGCCAAAATCCTGAGGCTTGTCAACAGGACGACGGTCACGTACCAGAAAGAACATTACATTGTTAGTGTGGTTCTTAGTCTTGATATTCTCATCCATCCATATCTTCCCTAA |
|
Protein Sequence
|
MGACHVQHQSILTMVLILASFLLVINDIIVNPNKLLHESLFFSSILPTGNRSMPFTKNLITVTMNILHSCSTWLVVKHVEDLAKILRLVNRTTVTYQKEHYIVSVVLSLDILIHPYLP |
|
NCBI Accession
|
YP_009270639.1
|
|
Location
|
1057-1461 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTTACGCACAGGGGAGTACATCACTGCAGCTCAAGCCGAGAATGGCGCATTTATCTGGACGGTTCCAAATCCCCTATATTTCAAGATGACAGACCACCACAGCAGGCCTTTTCTGTCGAACCACGACATAATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGACCTCACACCTTCAGATTGGTCGTTTCTTAAGGGTATTTAGGACCCAAGTTTTGAAATTTATAGATAGTTTGGGTGTAATTAGCATAAACAATGTAATTAGGGCAGTGAATCATGTACTGTGGAATGTATTAACGCAAACAATATATGTACAAAGTTCAATGATAATAAAACTAAATCTTTATTAA |
|
Protein Sequence
|
MDLRTGEYITAAQAENGAFIWTVPNPLYFKMTDHHSRPFLSNHDIITARIQFNYNLRKALGIHQCFLTFRIWTTSHLQIGRFLRVFRTQVLKFIDSLGVISINNVIRAVNHVLWNVLTQTIYVQSSMIIKLNLY |
|
NCBI Accession
|
YP_009270640.1
|
|
Location
|
1202-1606 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transcription activator protein |
|
Coding Region
|
ATGCGATCTTCGTCACCCTCAGGAGCCCACTCTACTCAGGTACCCATCAAAGTTCAGCACAACAGAGCCAAGAAGAGGTTCCGACGGAGGAGAGTGGACCTTGATTGTGGGTGCTCCTATTTCCTGGCCATTGGCTGCCACAACCATGGATTTACGCACAGGGGAGTACATCACTGCAGCTCAAGCCGAGAATGGCGCATTTATCTGGACGGTTCCAAATCCCCTATATTTCAAGATGACAGACCACCACAGCAGGCCTTTTCTGTCGAACCACGACATAATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGACCTCACACCTTCAGATTGGTCGTTTCTTAAGGGTATTTAG |
|
Protein Sequence
|
MRSSSPSGAHSTQVPIKVQHNRAKKRFRRRRVDLDCGCSYFLAIGCHNHGFTHRGVHHCSSSREWRIYLDGSKSPIFQDDRPPQQAFSVEPRHNNGKNTVQLQPEESTGDSPMFPNLPHLDDLTPSDWSFLKGI |
|
NCBI Accession
|
YP_009270641.1
|
|
Location
|
1503-2591 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGCCTCCCAAACGTTTTCTTATAAATTCGAAGAATTATTTTATAACGTATCCCAAATGTTCCCTCACCAAAGAACAAGCACTTTCCCAATTAAAAAACCTAGAAACCCCAACAAATAAAAAATTCATCAAGATCTGCAGGGAAATGCACGAGAATGGGGAACCTCATCTACACGTGCTCATCCAGTTCGAAGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTATATCGATAAGGACGGAGACACAATCGAATGGGGAGAGTTCCAGGTCGACGGAAGATCTGCAAGAGGGGGACAGCAAACAGCAAACGACGCTTACGCAGCAGCACTTAACGCGGGAAGCAAGTCGGAAGCTCTTAGAATACTTAGGGAGCTAGCCCCTAAAGACTTTGTATTACAATATCATAATTTAAATGCCAATTTAGAGAAGATTTTTACACCTCCGTTGGAGGTTTATATTTCTCCTTTTTCTTCTTCTTCTTTTGATCGAGTTCCAGAAGAACTCGAAGAGTGGGCTGCAGAAAATGTTGTCGATGCCGCTGCGCGGCCCCTGAGACCGGTGAGCATTGTCGTTGAGGGTGATAGTCGGACGGGGAAGACGATGTGGGCCAGGTCATTGGGTCCGCATAATTACCTTTGTGGACACCTAGATCTGAGTCCTAAAGTGTACAGCAACGAGTCATGGTATAACGTCATTGATGACGTCGATCCGCACTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAACACGAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGGATACCAACAATCTTCCTCTGCAATCCAGGGCCCAATTCGAGCTATAAAGAGTACTTAGACGAGGAAAAGAACATCGCACTCAAAAATTGGGCTCAAAGAAATGCGATCTTCGTCACCCTCAGGAGCCCACTCTACTCAGGTACCCATCAAAGTTCAGCACAACAGAGCCAAGAAGAGGTTCCGACGGAGGAGAGTGGACCTTGA |
|
Protein Sequence
|
MPPKRFLINSKNYFITYPKCSLTKEQALSQLKNLETPTNKKFIKICREMHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQVDGRSARGGQQTANDAYAAALNAGSKSEALRILRELAPKDFVLQYHNLNANLEKIFTPPLEVYISPFSSSSFDRVPEELEEWAAENVVDAAARPLRPVSIVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNESWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNIALKNWAQRNAIFVTLRSPLYSGTHQSSAQQSQEEVPTEESGP |
|
NCBI Accession
|
YP_009270642.1
|
|
Location
|
2135-2437 |
|
Gene Name
|
AC4 |
|
Protein Name
|
silencing suppressor |
|
Coding Region
|
ATGGGGAACCTCATCTACACGTGCTCATCCAGTTCGAAGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTATATCGATAAGGACGGAGACACAATCGAATGGGGAGAGTTCCAGGTCGACGGAAGATCTGCAAGAGGGGGACAGCAAACAGCAAACGACGCTTACGCAGCAGCACTTAACGCGGGAAGCAAGTCGGAAGCTCTTAGAATACTTAGGGAGCTAG |
|
Protein Sequence
|
MGNLIYTCSSSSKGNTSARISDSSTWYPHPGQHISIRTFRELNPAPMSSPISIRTETQSNGESSRSTEDLQEGDSKQQTTLTQQHLTREASRKLLEYLGS |