Senna leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_001706945.1
Isolate India
Release date 2016/8/18
Submitter Kumar,J., Alok,A., Tuli,R.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_030748
ACCGGATGGCCGCGCGATTTTTTAGTGCTCCGCAATCTCTCATCCTCCAATCATAACTCTCGCTGAAAGCTTAAATAATAGTATAATGCATTATAAGTACTTAGTCTCCAAGTTTCTCTTTGCACCATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTATGCCCGTGCCGCTGTCCCTCAGATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATTTACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGGTGTGAGGGTCCGTGTAAGGTCCAGTCATTCGAGTCTAGACATGATGTAGTTCACATTGGTAAAGTTATGTGTATTAGTGATGTAACTAGGGGTACTGGTTTAACGCATAGGGTAGGTAAGCGTTTCTGTGTTAAGTCCGTCTATGTGTTAGGGAAGATATGGATGGATGAGAATATCAAGACTAAGAACCACACTAACAATGTAATGTTCTTTCTGGTACGTGACCGTCGTCCTGTTGACAAGCCTCAGGATTTTGGCGAGGTCTTCAACATGTTTGACAACGAGCCAAGTACTGCAACTGTGAAGAATGTTCATCGTGACCGTTATCAGGTTCTTCGTAAATGGCATGCTACGGTTACCGGTGGGCAGTATGCTGCTAAAGAACAAGCTCTCGTGAAGAAGTTTATTAGGGTTAACAATTATGTCGTTTATAACCAGCAAGAAGCTGGCAAGTATGAGAACCATAGTGAGAATGCTTTGATGTTGTACATGGCATGCACCCATGCCTCCAATCCAGTGTATGCAACTCTAAAGATACGAATCTATTTCTACGATTCGGTCACCAATTAATAAAGATTTAGTTTTATTATCATTGAACTTTGTACATATATTGTTTGCGTTAATACATTCCACAGTACATGATTCACTGCCCTAATTACATTGTTTATGCTAATTACACCCAAACTATCTATAAATTTCAAAACTTGGGTCCTAAATACCCTTAAGAAACGACCAATCTGAAGGTGTGAGGTCGTCCAGATGCGGAAGGTTAGGAAACATTGGTGAATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAACTGTATTCTTGCCGTTATTATGTCGTGGTTCGACAGAAAAGGCCTGCTGTGGTGGTCTGTCATCTTGAAATATAGGGGATTTGGAACCGTCCAGATAAATGCGCCATTCTCGGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGTAAATCCATGGTTGTGGCAGCCAATGGCCAGGAAATAGGAGCACCCACAATCAAGGTCCACTCTCCTCCGTCGGAACCTCTTCTTGGCTCTGTTGTGCTGAACTTTGATGGGTACCTGAGTAGAGTGGGCTCCTGAGGGTGACGAAGATCGCATTTCTTTGAGCCCAATTTTTGAGTGCGATGTTCTTTTCCTCGTCTAAGTACTCTTTATAGCTCGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTACTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCATGACTCGTTGCTGTACACTTTAGGACTCAGATCTAGGTGTCCACAAAGGTAATTATGCGGACCCAATGACCTGGCCCACATCGTCTTCCCCGTCCGACTATCACCCTCAACGACAATGCTCACCGGTCTCAGGGGCCGCGCAGCGGCATCGACAACATTTTCTGCAGCCCACTCTTCGAGTTCTTCTGGAACTCGATCAAAAGAAGAAGAAGAAAAAGGAGAAATATAAACCTCCAACGGAGGTGTAAAAATCTTCTCTAAATTGGCATTTAAATTATGATATTGTAATACAAAGTCTTTAGGGGCTAGCTCCCTAAGTATTCTAAGAGCTTCCGACTTGCTTCCCGCGTTAAGTGCTGCTGCGTAAGCGTCGTTTGCTGTTTGCTGTCCCCCTCTTGCAGATCTTCCGTCGACCTGGAACTCTCCCCATTCGATTGTGTCTCCGTCCTTATCGATATAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGATGGGGATACCAAGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCTTCGAACTGGATGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGCATTTCCCTGCAGATCTTGATGAATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAATTGGGAAAGTGCTTGTTCTTTGGTGAGGGAACATTTGGGATACGTTATAAAATAATTCTTCGAATTTATAAGAAAACGTTTGGGAGGCATGTTGACTATATAGAGGACCCGATTGACCGCTCTTGCAACTCTCCCCTGTATATTGGGTCTCAATATATAGTGAGACCCAAATGGCACGCTCGTAATTTTTTAGTGAAACTCAAAAATCTAACGCTCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009270636.1
Location 127-486
Gene Name AV2
Protein Name movement protein
Coding Region ATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTATGCCCGTGCCGCTGTCCCTCAGATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATTTACAGAATGTACAGAAGTCCGGATGTTCCTAA
Protein Sequence MWDPLLNQFPETVFGLRCMLAVKYLQLVERTYSPDTVGYELIRDLISVVRARKYAEATTRYEHFNARMESTPSVELRQPVCPCRCPSDCPRHLKVSGVGQQAHEQEAQDLQNVQKSGCS

NCBI Accession YP_009270637.1
Location 287-1060
Gene Name AV1
Protein Name coat protein
Coding Region ATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTATGCCCGTGCCGCTGTCCCTCAGATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATTTACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGGTGTGAGGGTCCGTGTAAGGTCCAGTCATTCGAGTCTAGACATGATGTAGTTCACATTGGTAAAGTTATGTGTATTAGTGATGTAACTAGGGGTACTGGTTTAACGCATAGGGTAGGTAAGCGTTTCTGTGTTAAGTCCGTCTATGTGTTAGGGAAGATATGGATGGATGAGAATATCAAGACTAAGAACCACACTAACAATGTAATGTTCTTTCTGGTACGTGACCGTCGTCCTGTTGACAAGCCTCAGGATTTTGGCGAGGTCTTCAACATGTTTGACAACGAGCCAAGTACTGCAACTGTGAAGAATGTTCATCGTGACCGTTATCAGGTTCTTCGTAAATGGCATGCTACGGTTACCGGTGGGCAGTATGCTGCTAAAGAACAAGCTCTCGTGAAGAAGTTTATTAGGGTTAACAATTATGTCGTTTATAACCAGCAAGAAGCTGGCAAGTATGAGAACCATAGTGAGAATGCTTTGATGTTGTACATGGCATGCACCCATGCCTCCAATCCAGTGTATGCAACTCTAAAGATACGAATCTATTTCTACGATTCGGTCACCAATTAA
Protein Sequence MPKRPLDMSISTPGWKVRRRLNFDSPYARAAVPQIVPVISKSRAWANRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYAAKEQALVKKFIRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_009270638.1
Location 638-994
Gene Name AC5
Protein Name ac5
Coding Region ATGGGTGCATGCCATGTACAACATCAAAGCATTCTCACTATGGTTCTCATACTTGCCAGCTTCTTGCTGGTTATAAACGACATAATTGTTAACCCTAATAAACTTCTTCACGAGAGCTTGTTCTTTAGCAGCATACTGCCCACCGGTAACCGTAGCATGCCATTTACGAAGAACCTGATAACGGTCACGATGAACATTCTTCACAGTTGCAGTACTTGGCTCGTTGTCAAACATGTTGAAGACCTCGCCAAAATCCTGAGGCTTGTCAACAGGACGACGGTCACGTACCAGAAAGAACATTACATTGTTAGTGTGGTTCTTAGTCTTGATATTCTCATCCATCCATATCTTCCCTAA
Protein Sequence MGACHVQHQSILTMVLILASFLLVINDIIVNPNKLLHESLFFSSILPTGNRSMPFTKNLITVTMNILHSCSTWLVVKHVEDLAKILRLVNRTTVTYQKEHYIVSVVLSLDILIHPYLP

NCBI Accession YP_009270639.1
Location 1057-1461
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTTACGCACAGGGGAGTACATCACTGCAGCTCAAGCCGAGAATGGCGCATTTATCTGGACGGTTCCAAATCCCCTATATTTCAAGATGACAGACCACCACAGCAGGCCTTTTCTGTCGAACCACGACATAATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGACCTCACACCTTCAGATTGGTCGTTTCTTAAGGGTATTTAGGACCCAAGTTTTGAAATTTATAGATAGTTTGGGTGTAATTAGCATAAACAATGTAATTAGGGCAGTGAATCATGTACTGTGGAATGTATTAACGCAAACAATATATGTACAAAGTTCAATGATAATAAAACTAAATCTTTATTAA
Protein Sequence MDLRTGEYITAAQAENGAFIWTVPNPLYFKMTDHHSRPFLSNHDIITARIQFNYNLRKALGIHQCFLTFRIWTTSHLQIGRFLRVFRTQVLKFIDSLGVISINNVIRAVNHVLWNVLTQTIYVQSSMIIKLNLY

NCBI Accession YP_009270640.1
Location 1202-1606
Gene Name AC2
Protein Name transcription activator protein
Coding Region ATGCGATCTTCGTCACCCTCAGGAGCCCACTCTACTCAGGTACCCATCAAAGTTCAGCACAACAGAGCCAAGAAGAGGTTCCGACGGAGGAGAGTGGACCTTGATTGTGGGTGCTCCTATTTCCTGGCCATTGGCTGCCACAACCATGGATTTACGCACAGGGGAGTACATCACTGCAGCTCAAGCCGAGAATGGCGCATTTATCTGGACGGTTCCAAATCCCCTATATTTCAAGATGACAGACCACCACAGCAGGCCTTTTCTGTCGAACCACGACATAATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGACCTCACACCTTCAGATTGGTCGTTTCTTAAGGGTATTTAG
Protein Sequence MRSSSPSGAHSTQVPIKVQHNRAKKRFRRRRVDLDCGCSYFLAIGCHNHGFTHRGVHHCSSSREWRIYLDGSKSPIFQDDRPPQQAFSVEPRHNNGKNTVQLQPEESTGDSPMFPNLPHLDDLTPSDWSFLKGI

NCBI Accession YP_009270641.1
Location 1503-2591
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGCCTCCCAAACGTTTTCTTATAAATTCGAAGAATTATTTTATAACGTATCCCAAATGTTCCCTCACCAAAGAACAAGCACTTTCCCAATTAAAAAACCTAGAAACCCCAACAAATAAAAAATTCATCAAGATCTGCAGGGAAATGCACGAGAATGGGGAACCTCATCTACACGTGCTCATCCAGTTCGAAGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTATATCGATAAGGACGGAGACACAATCGAATGGGGAGAGTTCCAGGTCGACGGAAGATCTGCAAGAGGGGGACAGCAAACAGCAAACGACGCTTACGCAGCAGCACTTAACGCGGGAAGCAAGTCGGAAGCTCTTAGAATACTTAGGGAGCTAGCCCCTAAAGACTTTGTATTACAATATCATAATTTAAATGCCAATTTAGAGAAGATTTTTACACCTCCGTTGGAGGTTTATATTTCTCCTTTTTCTTCTTCTTCTTTTGATCGAGTTCCAGAAGAACTCGAAGAGTGGGCTGCAGAAAATGTTGTCGATGCCGCTGCGCGGCCCCTGAGACCGGTGAGCATTGTCGTTGAGGGTGATAGTCGGACGGGGAAGACGATGTGGGCCAGGTCATTGGGTCCGCATAATTACCTTTGTGGACACCTAGATCTGAGTCCTAAAGTGTACAGCAACGAGTCATGGTATAACGTCATTGATGACGTCGATCCGCACTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAACACGAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGGATACCAACAATCTTCCTCTGCAATCCAGGGCCCAATTCGAGCTATAAAGAGTACTTAGACGAGGAAAAGAACATCGCACTCAAAAATTGGGCTCAAAGAAATGCGATCTTCGTCACCCTCAGGAGCCCACTCTACTCAGGTACCCATCAAAGTTCAGCACAACAGAGCCAAGAAGAGGTTCCGACGGAGGAGAGTGGACCTTGA
Protein Sequence MPPKRFLINSKNYFITYPKCSLTKEQALSQLKNLETPTNKKFIKICREMHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQVDGRSARGGQQTANDAYAAALNAGSKSEALRILRELAPKDFVLQYHNLNANLEKIFTPPLEVYISPFSSSSFDRVPEELEEWAAENVVDAAARPLRPVSIVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNESWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNIALKNWAQRNAIFVTLRSPLYSGTHQSSAQQSQEEVPTEESGP

NCBI Accession YP_009270642.1
Location 2135-2437
Gene Name AC4
Protein Name silencing suppressor
Coding Region ATGGGGAACCTCATCTACACGTGCTCATCCAGTTCGAAGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTATATCGATAAGGACGGAGACACAATCGAATGGGGAGAGTTCCAGGTCGACGGAAGATCTGCAAGAGGGGGACAGCAAACAGCAAACGACGCTTACGCAGCAGCACTTAACGCGGGAAGCAAGTCGGAAGCTCTTAGAATACTTAGGGAGCTAG
Protein Sequence MGNLIYTCSSSSKGNTSARISDSSTWYPHPGQHISIRTFRELNPAPMSSPISIRTETQSNGESSRSTEDLQEGDSKQQTTLTQQHLTREASRKLLEYLGS

References More References in PubMed

1

Senna leaf curl virus: a novel begomovirus identified in Senna occidentalis.

Kumar J, et al.  Arch Virol. 2016 Sep;161(9):2609-12. doi: 10.1007/s00705-016-2931-7. Epub 2016 Jun 17.

PMID: 27314944
2

Association of a novel begomovirus species with fenugreek yellow vein disease in India.

Kumar M, et al.  Mol Biol Rep. 2023 Nov;50(11):9203-9211. doi: 10.1007/s11033-023-08806-6. Epub 2023 Sep 30.

PMID: 37776416
3

Association of a monopartite begomovirus and associated betasatellite with yellow vein disease of a weed host, Senna italica Mill. In Oman.

Al-Mabsli SS, et al.  Virusdisease. 2021 Jun;32(2):378-380. doi: 10.1007/s13337-021-00664-9. Epub 2021 Apr 28.

PMID: 34350321