Senecio yellow mosaic virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000860065.1 |
| Isolate |
China:Guangxi |
| Release date |
2015/2/13 |
| Submitter |
Huang,J.F., Zhou,X.P., Cai,J.H., Li,G.X., Zhou,X. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCAGAAGGCCCGCGCCCCGCTTTTATTATGGCCCCTCCACTAATTTATGTCCGCCAGTAATAATGGGCCCTGGGAGCCTATTAAATTGACTGCTCCTCTTTATATAGTGGGCTCTGTATGTCATGTCTATTAAAATGTGGGATCCACTTTTAAACGAGTTTCCAGAAACTGTACATGGATTTAGGTGTATGCTTGCAATAAAATATCTGCAGCTTTGTGAGTCTACATACGCTCCTGATACTATTGGATTTGATTTAATACGCGACCTTATATTGGTCATAAGGGCTAGAGATTATGTCGAAGCGACCAGGAGATATAATCATTTCCACTCCCGCATCCAAAGTACGCCGTCGTCTGAATTTCGACAGCCCATACAGCAGTCGTGCTGTTGCCCCCACTGTCCTAGGCATAAGCCGAAAGAGAACATGGGTGCAACGTCCCATGTATCGGAAACCAAGACTATATAGAATGTATAGGAGCCCTGATGTTCCTAGGGGTTGTGAAGGTCCGTGTAAGGTTCAATCCTTTGAACAGAGACATGATATAGCTCATACTGGAAAGGTCATATGTATTTCTGATGTTACTAGGGGGAATGGTATAACTCACCGGGTAGGGAAGCGTTTTTGTGTTAAGTCTGTTTATATATTAGGTAAAGTTTGGATGGATGAAAACATCAAGGTTAAGAATCATACAAATACAGTTATGTTCTATGTTGTAAGAGATAGACGTCCGTATGGTACTCCTCAAGACTTTGGACAGGTTTTTAATATGTATGATAATGAACCGAGCACTGCGACTGTTAAGAATGATATGAGGGATCGATTCCAGGTTTTGAGGAAGTTTTCAGCAACTGTTACAGGTGGTCAGTATGCGTCAAAGGAGCAAGCCATAGTAAAGAGATTTATGAAGATAAACAATCATGTTACATACAATCATCAAGAAGCTGCCAAATATGAAAATCATACTGAAAATGCTGTATTGTTGTATATGGCATGTACTCATGCATCTAATCCTGTGTATGCTACTTTAAAAATAAGAATCTATTTCTATGATTCTACAATGAATTAATAAATATTAAATTTTATTTCATGTTCTTCAACTACATCAATTGTTTTGTCTAATACATCATATAATACATGACCAAATGCTCTAATACAGTTGTTAATACTAATAACACCTAAAGAATCTAAATACTTAATCACTTGGGTTTTAAATACCCTCAAGAAATGCGATGTCTGAGGTTGTAAGGCTGTGAATATCCTCAAGTTGAGATAACATTTGTGAATCCCCAACGCCTTCCTGAGGTTGTGGTTGAACCGTATTTGGATATGGATAATGTCGTGGTTTTCGTTGAATGGCCGCCGTTGGTGGTTGAGGATCTTGAAATATAGGGGATTTATGATTTCCCAGGTATGTACGCCATTCATTGCTTGAGCTGCAGTGATGGACTCCCCTGTGCGTAAATCCATGATGTTCGCAGTTTATTGTTCTGTATATGGAACACCCACACGGTAGATCAATTCTCTTCCTGCGAATTGGTTTCTTGGCCTGTTTGTGAATCACTTTGATGGGTGTAAAGTGGTTCTGTGAGAATGATGAAGGTTGCATTTTTTAATGCCCACTCCTTTAAAGCACTGTTTTTATCCTCTTCCAAGAATTCTATATATGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTATTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCAACGTCATCGATGACGTTGTACCAGGCGCTGTTCGAATATACCTTGGGGCTTAAGTCTAGGTGTCCACATAAGTAATTGTGTGGCCCCAGAGACCTGGCCCACGCGGTCTTACCTGTACGACTATCACCTTCGATCACGATACTTTTAGGTCTCCACGGCCGCGCAGCGGTGTCTCTTACATTTTCTGATACCCAATCCTTTAGTTCATCTGGGACTTGAGTGAATGTTGAATTATGAAAAGGAGAAACATATACCTCTGATGGAGGCTTGAAGATCCTATCTAGATTATTATTTAGGTTATGAAATTGTAAAACATAGTCCTTTGGGACTAGTTCTTTAATAATCTCAAGAGCCTCATGCTTACTTCCCGCGTTAATTGCCTGGGCGTAAGCATCGTTTGTAGATTGTAGACCCCCTCTTGCAGATCGTCCGTCGATCTGAAATTCTCCCCATTCGATTGTGTCACCGTCCTTGTCCAGATAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATATTTGGATGGAAATGTGTTGACCTGGTTGGGGAGACCATGTCGAAGAATCTGTTATTCGAGCATTTGTATTTCCCCTCGAATTGCATAAGCACGTGGAGATGAGGGCTCCCATCCTCGTGTAATTCTCTGCAGATCTTTATAAATTTTTTATTAATTGGAGTTTTTAGGTTTTTGATTTGGGAAAGTGCTTCCTCTTTGGTGAGGGAGCAATGTGGATATGTGAGGAAATAGTTTTTTGCATTTATTTGAAAACGTTTGGGAGGAGCCATTGACCAGGTCAACTGGTACCAATACCATCTAACGCATGTAATCGGGGAAAAGGTCACAATATATAGTATGGTACCTAATGGCATAATTGTAATTCTTTACAGAGTTACTTTAATTTGAAATTTATAAAGCGGGCCTTCTGTATAATATT
Gene Information
|
NCBI Accession
|
YP_232874.1
|
|
Location
|
124-468 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTCTATTAAAATGTGGGATCCACTTTTAAACGAGTTTCCAGAAACTGTACATGGATTTAGGTGTATGCTTGCAATAAAATATCTGCAGCTTTGTGAGTCTACATACGCTCCTGATACTATTGGATTTGATTTAATACGCGACCTTATATTGGTCATAAGGGCTAGAGATTATGTCGAAGCGACCAGGAGATATAATCATTTCCACTCCCGCATCCAAAGTACGCCGTCGTCTGAATTTCGACAGCCCATACAGCAGTCGTGCTGTTGCCCCCACTGTCCTAGGCATAAGCCGAAAGAGAACATGGGTGCAACGTCCCATGTATCGGAAACCAAGACTATATAG |
|
Protein Sequence
|
MSIKMWDPLLNEFPETVHGFRCMLAIKYLQLCESTYAPDTIGFDLIRDLILVIRARDYVEATRRYNHFHSRIQSTPSSEFRQPIQQSCCCPHCPRHKPKENMGATSHVSETKTI |
|
NCBI Accession
|
YP_232875.1
|
|
Location
|
296-1069 |
|
Gene Name
|
AV1 |
|
Protein Name
|
cp protein |
|
Coding Region
|
ATGTCGAAGCGACCAGGAGATATAATCATTTCCACTCCCGCATCCAAAGTACGCCGTCGTCTGAATTTCGACAGCCCATACAGCAGTCGTGCTGTTGCCCCCACTGTCCTAGGCATAAGCCGAAAGAGAACATGGGTGCAACGTCCCATGTATCGGAAACCAAGACTATATAGAATGTATAGGAGCCCTGATGTTCCTAGGGGTTGTGAAGGTCCGTGTAAGGTTCAATCCTTTGAACAGAGACATGATATAGCTCATACTGGAAAGGTCATATGTATTTCTGATGTTACTAGGGGGAATGGTATAACTCACCGGGTAGGGAAGCGTTTTTGTGTTAAGTCTGTTTATATATTAGGTAAAGTTTGGATGGATGAAAACATCAAGGTTAAGAATCATACAAATACAGTTATGTTCTATGTTGTAAGAGATAGACGTCCGTATGGTACTCCTCAAGACTTTGGACAGGTTTTTAATATGTATGATAATGAACCGAGCACTGCGACTGTTAAGAATGATATGAGGGATCGATTCCAGGTTTTGAGGAAGTTTTCAGCAACTGTTACAGGTGGTCAGTATGCGTCAAAGGAGCAAGCCATAGTAAAGAGATTTATGAAGATAAACAATCATGTTACATACAATCATCAAGAAGCTGCCAAATATGAAAATCATACTGAAAATGCTGTATTGTTGTATATGGCATGTACTCATGCATCTAATCCTGTGTATGCTACTTTAAAAATAAGAATCTATTTCTATGATTCTACAATGAATTAA |
|
Protein Sequence
|
MSKRPGDIIISTPASKVRRRLNFDSPYSSRAVAPTVLGISRKRTWVQRPMYRKPRLYRMYRSPDVPRGCEGPCKVQSFEQRHDIAHTGKVICISDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKVKNHTNTVMFYVVRDRRPYGTPQDFGQVFNMYDNEPSTATVKNDMRDRFQVLRKFSATVTGGQYASKEQAIVKRFMKINNHVTYNHQEAAKYENHTENAVLLYMACTHASNPVYATLKIRIYFYDSTMN |
|
NCBI Accession
|
YP_232876.1
|
|
Location
|
1066-1470 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTTACGCACAGGGGAGTCCATCACTGCAGCTCAAGCAATGAATGGCGTACATACCTGGGAAATCATAAATCCCCTATATTTCAAGATCCTCAACCACCAACGGCGGCCATTCAACGAAAACCACGACATTATCCATATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGTTGGGGATTCACAAATGTTATCTCAACTTGAGGATATTCACAGCCTTACAACCTCAGACATCGCATTTCTTGAGGGTATTTAAAACCCAAGTGATTAAGTATTTAGATTCTTTAGGTGTTATTAGTATTAACAACTGTATTAGAGCATTTGGTCATGTATTATATGATGTATTAGACAAAACAATTGATGTAGTTGAAGAACATGAAATAAAATTTAATATTTATTAA |
|
Protein Sequence
|
MDLRTGESITAAQAMNGVHTWEIINPLYFKILNHQRRPFNENHDIIHIQIRFNHNLRKALGIHKCYLNLRIFTALQPQTSHFLRVFKTQVIKYLDSLGVISINNCIRAFGHVLYDVLDKTIDVVEEHEIKFNIY |
|
NCBI Accession
|
YP_232877.1
|
|
Location
|
1211-1609 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCAACCTTCATCATTCTCACAGAACCACTTTACACCCATCAAAGTGATTCACAAACAGGCCAAGAAACCAATTCGCAGGAAGAGAATTGATCTACCGTGTGGGTGTTCCATATACAGAACAATAAACTGCGAACATCATGGATTTACGCACAGGGGAGTCCATCACTGCAGCTCAAGCAATGAATGGCGTACATACCTGGGAAATCATAAATCCCCTATATTTCAAGATCCTCAACCACCAACGGCGGCCATTCAACGAAAACCACGACATTATCCATATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGTTGGGGATTCACAAATGTTATCTCAACTTGAGGATATTCACAGCCTTACAACCTCAGACATCGCATTTCTTGAGGGTATTTAA |
|
Protein Sequence
|
MQPSSFSQNHFTPIKVIHKQAKKPIRRKRIDLPCGCSIYRTINCEHHGFTHRGVHHCSSSNEWRTYLGNHKSPIFQDPQPPTAAIQRKPRHYPYPNTVQPQPQEGVGDSQMLSQLEDIHSLTTSDIAFLEGI |
|
NCBI Accession
|
YP_232878.1
|
|
Location
|
1518-2597 |
|
Gene Name
|
AC1 |
|
Protein Name
|
AC1 protein |
|
Coding Region
|
ATGGCTCCTCCCAAACGTTTTCAAATAAATGCAAAAAACTATTTCCTCACATATCCACATTGCTCCCTCACCAAAGAGGAAGCACTTTCCCAAATCAAAAACCTAAAAACTCCAATTAATAAAAAATTTATAAAGATCTGCAGAGAATTACACGAGGATGGGAGCCCTCATCTCCACGTGCTTATGCAATTCGAGGGGAAATACAAATGCTCGAATAACAGATTCTTCGACATGGTCTCCCCAACCAGGTCAACACATTTCCATCCAAATATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTATCTGGACAAGGACGGTGACACAATCGAATGGGGAGAATTTCAGATCGACGGACGATCTGCAAGAGGGGGTCTACAATCTACAAACGATGCTTACGCCCAGGCAATTAACGCGGGAAGTAAGCATGAGGCTCTTGAGATTATTAAAGAACTAGTCCCAAAGGACTATGTTTTACAATTTCATAACCTAAATAATAATCTAGATAGGATCTTCAAGCCTCCATCAGAGGTATATGTTTCTCCTTTTCATAATTCAACATTCACTCAAGTCCCAGATGAACTAAAGGATTGGGTATCAGAAAATGTAAGAGACACCGCTGCGCGGCCGTGGAGACCTAAAAGTATCGTGATCGAAGGTGATAGTCGTACAGGTAAGACCGCGTGGGCCAGGTCTCTGGGGCCACACAATTACTTATGTGGACACCTAGACTTAAGCCCCAAGGTATATTCGAACAGCGCCTGGTACAACGTCATCGATGACGTTGATCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAGTCAAATACAAAATACGGAAAGCCAATTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCTACTTCATCATATATAGAATTCTTGGAAGAGGATAAAAACAGTGCTTTAAAGGAGTGGGCATTAAAAAATGCAACCTTCATCATTCTCACAGAACCACTTTACACCCATCAAAGTGATTCACAAACAGGCCAAGAAACCAATTCGCAGGAAGAGAATTGA |
|
Protein Sequence
|
MAPPKRFQINAKNYFLTYPHCSLTKEEALSQIKNLKTPINKKFIKICRELHEDGSPHLHVLMQFEGKYKCSNNRFFDMVSPTRSTHFHPNIQGAKSSSDVKSYLDKDGDTIEWGEFQIDGRSARGGLQSTNDAYAQAINAGSKHEALEIIKELVPKDYVLQFHNLNNNLDRIFKPPSEVYVSPFHNSTFTQVPDELKDWVSENVRDTAARPWRPKSIVIEGDSRTGKTAWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYIEFLEEDKNSALKEWALKNATFIILTEPLYTHQSDSQTGQETNSQEEN |
|
NCBI Accession
|
YP_232879.1
|
|
Location
|
2138-2440 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGAGCCCTCATCTCCACGTGCTTATGCAATTCGAGGGGAAATACAAATGCTCGAATAACAGATTCTTCGACATGGTCTCCCCAACCAGGTCAACACATTTCCATCCAAATATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTATCTGGACAAGGACGGTGACACAATCGAATGGGGAGAATTTCAGATCGACGGACGATCTGCAAGAGGGGGTCTACAATCTACAAACGATGCTTACGCCCAGGCAATTAACGCGGGAAGTAAGCATGAGGCTCTTGAGATTATTAAAGAACTAG |
|
Protein Sequence
|
MGALISTCLCNSRGNTNARITDSSTWSPQPGQHISIQIFRELNQAPTSSPIWTRTVTQSNGENFRSTDDLQEGVYNLQTMLTPRQLTREVSMRLLRLLKN |