Rose leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000921455.1 |
| Isolate |
India |
| Release date |
2015/2/22 |
| Submitter |
Nehra,C., Sahu,A.K., Gaur,R.K. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGGCGCGCTTTTTTGTCCCCCCGTGGGTCCCACCAAGTGGTCCCTGGACACATGGCCCAATCAAAAGCACTCGTAAAAGCTCAATTGATTTGTGGGCCCCATATATAATTGCTTGCTGAGTAAGTTTTTTTTAAACATGTGGGACCCACTATTGAATGATTTTCCAGAAACTGTTCATGGGTTTAGGTGTATGCTAGCAATTAAATACTTGCAGCTAGTAAAAAATACGTTTTCCCCAGACACTCTGGGATACGATTTAATTGGGGATTTGATTTCAGTAATAAGGGCTAGGGATTATGTCGAAGCGACCCGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCCCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTCCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTAAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACAACAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCTGTTGACAAGCCTCAAGTTTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGCACGGGGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGGACGCAACTGTGACAGGTGGCCTGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATTTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCCACACTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAATAAAATTTATCAGTATCGAATTAATAAATATTGAATTTTATTGAAGATGATTGTTTTACATATACAATATGCTCTAATACATTCCATAATACATGATCAACTGCTCTAATTACTTTGTTAATACTGATAACTCCTAGATTATCTAAATACTTAAGGACTTGTGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATTCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGGGCAGTGATGATGTCTTGGTTCATGAGGAATCCCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCCCAGATAAACACCCCATTCTGTGCTTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGTGGGGGTTGATGTGTACGTAGTTTGGGCAGCCACACTCGAGGTCAACCCTCTTACGCCGGATGGCTCTACGCTTGGCCAGCCTGTGTTGGACCTTAATGGGCACCTGAGTACAGTGGCTCTGTGAGGGTGATGAATGTTGCATTGTGTATAGCCCAAGACTTCAGTGCTGAGTTCTTTTCCTCATCGAGGAACTCTTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATCGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGGCCCCCATGATTTCTTTAAAGTGCTTTAGGTAGTTGGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTTGAATAGATCTTAGGGCTCAGATCTAAATGGCCACATAGGTAATTATGTGGACCCAGTGACCTAGCCCACATTGTTTTCCCCGTACGCCTATCACCCTCAATGACGATACTTTTAGGTCTCAATGGCCGCGCAGCGGGACCCATCACATTATCAGAGGCCCATTCCTCTATGGCCTCTGGAACTTGATCGAAGGAAGAAGAAAGAAAAGGGGAAACATAAACCTCCATTTGGGGTGAAAAAATCCCATCTAGATTAGCATTAAGATTAGGAAATTTTAAGACATAATCCCTTGGTGCTAATTCCCTAATGACTCTAAGAGGCTCTGACTTACTGCCTGTGTTAATTGCCTTGGCGTAAGCATGCATTGGCTGACTGTTGTCCCCCTCGTGCAGATCTTCCATCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCTTCTCCAGATAGGACTTGACGTCCGAGCTTGATTTAGCTCCATGAATGTTAGGATGGAAATGTGCTGACCTGGTTGGCGATACCAGGTCGAAGAATCGGTTATTTGTGCACTGGTACTTCCCCTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCCTTTTCGTGAAGCTCTCTGCAGATCCTGATGATTTTTTTGTTTACTGGGGGGTGTATGTTTTTTAATTGATAGAGGGCTTCTTTTTTAGTTAGAGAGCATTGGGGATAAGTGAGGAAGTAATTCTTAGCATTTATGCGGAAGGCACGTGACATTTTGGCAATCGGTGTACACACTAATTCTCTGTCAATTGGTGTAAGGGGGTACAATATATACTTTTACACCAAATGGAAATTTGGTTTTTTGGGAACTTTAATTTGTAATATT
Gene Information
|
NCBI Accession
|
YP_009051687.1
|
|
Location
|
144-509 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGACCCACTATTGAATGATTTTCCAGAAACTGTTCATGGGTTTAGGTGTATGCTAGCAATTAAATACTTGCAGCTAGTAAAAAATACGTTTTCCCCAGACACTCTGGGATACGATTTAATTGGGGATTTGATTTCAGTAATAAGGGCTAGGGATTATGTCGAAGCGACCCGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCCCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTCCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTAA |
|
Protein Sequence
|
MWDPLLNDFPETVHGFRCMLAIKYLQLVKNTFSPDTLGYDLIGDLISVIRARDYVEATRRYNHFHARLEGTPPSQLRQPICEPCCSPHCPRHKGKGMGEQAHEQKAQDVQDVQKPRCSEGM |
|
NCBI Accession
|
YP_009051688.1
|
|
Location
|
304-1074 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCCGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCCCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTCCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTAAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACAACAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCTGTTGACAAGCCTCAAGTTTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGCACGGGGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGGACGCAACTGTGACAGGTGGCCTGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATTTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCCACACTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRPRLNFDSPYASRAAPPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCKGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENNKTKNHTNSVMFFLVRDRRPVDKPQVFGEVFNMFDNEPSTGTVKNVHRDRYQVLRKWDATVTGGLYASKEQALVKKFIRVNNYFVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
|
NCBI Accession
|
YP_009051689.1
|
|
Location
|
1095-1499 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCACAGAATGGGGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGGGATTCCTCATGAACCAAGACATCATCACTGCCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACACAAGTCCTTAAGTATTTAGATAATCTAGGAGTTATCAGTATTAACAAAGTAATTAGAGCAGTTGATCATGTATTATGGAATGTATTAGAGCATATTGTATATGTAAAACAATCATCTTCAATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGESITAAQAQNGVFIWEVQNPLYFKITEHHNRGFLMNQDIITAQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLDNLGVISINKVIRAVDHVLWNVLEHIVYVKQSSSIKFNIY |
|
NCBI Accession
|
YP_009051690.1
|
|
Location
|
1240-1647 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transcriptional activator protein |
|
Coding Region
|
ATGCAACATTCATCACCCTCACAGAGCCACTGTACTCAGGTGCCCATTAAGGTCCAACACAGGCTGGCCAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGACCTCGAGTGTGGCTGCCCAAACTACGTACACATCAACCCCCACAACCATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCACAGAATGGGGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGGGATTCCTCATGAACCAAGACATCATCACTGCCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA |
|
Protein Sequence
|
MQHSSPSQSHCTQVPIKVQHRLAKRRAIRRKRVDLECGCPNYVHINPHNHGFTHRGIHHCSSSTEWGVYLGGSKSPLFQDNRAPQQGIPHEPRHHHCPDTVQSQPEESVGNTQMFPSLPNLDDLTASDWSFLKGL |
|
NCBI Accession
|
YP_009051691.1
|
|
Location
|
1598-2629 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGTCACGTGCCTTCCGCATAAATGCTAAGAATTACTTCCTCACTTATCCCCAATGCTCTCTAACTAAAAAAGAAGCCCTCTATCAATTAAAAAACATACACCCCCCAGTAAACAAAAAAATCATCAGGATCTGCAGAGAGCTTCACGAAAAGGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGGAAGTACCAGTGCACAAATAACCGATTCTTCGACCTGGTATCGCCAACCAGGTCAGCACATTTCCATCCTAACATTCATGGAGCTAAATCAAGCTCGGACGTCAAGTCCTATCTGGAGAAGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGATGGAAGATCTGCACGAGGGGGACAACAGTCAGCCAATGCATGCTTACGCCAAGGCAATTAACACAGGCAGTAAGTCAGAGCCTCTTAGAGTCATTAGGGAATTAGCACCAAGGGATTATGTCTTAAAATTTCCTAATCTTAATGCTAATCTAGATGGGATTTTTTCACCCCAAATGGAGGTTTATGTTTCCCCTTTTCTTTCTTCTTCCTTCGATCAAGTTCCAGAGGCCATAGAGGAATGGGCCTCTGATAATGTGATGGGTCCCGCTGCGCGGCCATTGAGACCTAAAAGTATCGTCATTGAGGGTGATAGGCGTACGGGGAAAACAATGTGGGCTAGGTCACTGGGTCCACATAATTACCTATGTGGCCATTTAGATCTGAGCCCTAAGATCTATTCAAATGATGCATGGTACAACGTCATTGATGACGTAGACCCCAACTACCTAAAGCACTTTAAAGAAATCATGGGGGCCCAGAGGGACTGGCAAAGTAACACCAAGTACGGGAAGCCAGTTCAAATTAAAGGGGGCATTCCCACGATCTTCCTATGCAATCCTGGGCCCAATTCCAGCTATAAAGAGTTCCTCGATGAGGAAAAGAACTCAGCACTGAAGTCTTGGGCTATACACAATGCAACATTCATCACCCTCACAGAGCCACTGTACTCAGGTGCCCATTAA |
|
Protein Sequence
|
MSRAFRINAKNYFLTYPQCSLTKKEALYQLKNIHPPVNKKIIRICRELHEKGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIHGAKSSSDVKSYLEKTETPSIGESFRSMEDLHEGDNSQPMHAYAKAINTGSKSEPLRVIRELAPRDYVLKFPNLNANLDGIFSPQMEVYVSPFLSSSFDQVPEAIEEWASDNVMGPAARPLRPKSIVIEGDRRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPNYLKHFKEIMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKSWAIHNATFITLTEPLYSGAH |
|
NCBI Accession
|
YP_009051692.1
|
|
Location
|
2176-2361 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGAGCTAAATCAAGCTCGGACGTCAAGTCCTATCTGGAGAAGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGATGGAAGATCTGCACGAGGGGGACAACAGTCAGCCAATGCATGCTTACGCCAAGGCAATTAACACAGGCAGTAAGTCAGAGCCTCTTAGAGTCATTAGGGAATTAG |
|
Protein Sequence
|
MELNQARTSSPIWRRRRHPRLGRVSDRWKICTRGTTVSQCMLTPRQLTQAVSQSLLESLGN |