Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000921455.1 |
Isolate | India |
Release date | 2015/2/22 |
Submitter | Nehra,C., Sahu,A.K., Gaur,R.K. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009051687.1 |
---|---|
Location | 144-509 |
Gene Name | AV2 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGACCCACTATTGAATGATTTTCCAGAAACTGTTCATGGGTTTAGGTGTATGCTAGCAATTAAATACTTGCAGCTAGTAAAAAATACGTTTTCCCCAGACACTCTGGGATACGATTTAATTGGGGATTTGATTTCAGTAATAAGGGCTAGGGATTATGTCGAAGCGACCCGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCCCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTCCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTAA |
Protein Sequence | MWDPLLNDFPETVHGFRCMLAIKYLQLVKNTFSPDTLGYDLIGDLISVIRARDYVEATRRYNHFHARLEGTPPSQLRQPICEPCCSPHCPRHKGKGMGEQAHEQKAQDVQDVQKPRCSEGM |
NCBI Accession | YP_009051688.1 |
---|---|
Location | 304-1074 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCCGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCCCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTCCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTAAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACAACAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCTGTTGACAAGCCTCAAGTTTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGCACGGGGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGGACGCAACTGTGACAGGTGGCCTGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATTTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCCACACTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAA |
Protein Sequence | MSKRPADIIISTPASKVRPRLNFDSPYASRAAPPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCKGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENNKTKNHTNSVMFFLVRDRRPVDKPQVFGEVFNMFDNEPSTGTVKNVHRDRYQVLRKWDATVTGGLYASKEQALVKKFIRVNNYFVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession | YP_009051689.1 |
---|---|
Location | 1095-1499 |
Gene Name | AC3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCACAGAATGGGGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGGGATTCCTCATGAACCAAGACATCATCACTGCCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACACAAGTCCTTAAGTATTTAGATAATCTAGGAGTTATCAGTATTAACAAAGTAATTAGAGCAGTTGATCATGTATTATGGAATGTATTAGAGCATATTGTATATGTAAAACAATCATCTTCAATAAAATTCAATATTTATTAA |
Protein Sequence | MDSRTGESITAAQAQNGVFIWEVQNPLYFKITEHHNRGFLMNQDIITAQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLDNLGVISINKVIRAVDHVLWNVLEHIVYVKQSSSIKFNIY |
NCBI Accession | YP_009051690.1 |
---|---|
Location | 1240-1647 |
Gene Name | AC2 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCAACATTCATCACCCTCACAGAGCCACTGTACTCAGGTGCCCATTAAGGTCCAACACAGGCTGGCCAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGACCTCGAGTGTGGCTGCCCAAACTACGTACACATCAACCCCCACAACCATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCACAGAATGGGGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGGGATTCCTCATGAACCAAGACATCATCACTGCCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA |
Protein Sequence | MQHSSPSQSHCTQVPIKVQHRLAKRRAIRRKRVDLECGCPNYVHINPHNHGFTHRGIHHCSSSTEWGVYLGGSKSPLFQDNRAPQQGIPHEPRHHHCPDTVQSQPEESVGNTQMFPSLPNLDDLTASDWSFLKGL |
NCBI Accession | YP_009051691.1 |
---|---|
Location | 1598-2629 |
Gene Name | AC1 |
Protein Name | replication associated protein |
Coding Region | ATGTCACGTGCCTTCCGCATAAATGCTAAGAATTACTTCCTCACTTATCCCCAATGCTCTCTAACTAAAAAAGAAGCCCTCTATCAATTAAAAAACATACACCCCCCAGTAAACAAAAAAATCATCAGGATCTGCAGAGAGCTTCACGAAAAGGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGGAAGTACCAGTGCACAAATAACCGATTCTTCGACCTGGTATCGCCAACCAGGTCAGCACATTTCCATCCTAACATTCATGGAGCTAAATCAAGCTCGGACGTCAAGTCCTATCTGGAGAAGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGATGGAAGATCTGCACGAGGGGGACAACAGTCAGCCAATGCATGCTTACGCCAAGGCAATTAACACAGGCAGTAAGTCAGAGCCTCTTAGAGTCATTAGGGAATTAGCACCAAGGGATTATGTCTTAAAATTTCCTAATCTTAATGCTAATCTAGATGGGATTTTTTCACCCCAAATGGAGGTTTATGTTTCCCCTTTTCTTTCTTCTTCCTTCGATCAAGTTCCAGAGGCCATAGAGGAATGGGCCTCTGATAATGTGATGGGTCCCGCTGCGCGGCCATTGAGACCTAAAAGTATCGTCATTGAGGGTGATAGGCGTACGGGGAAAACAATGTGGGCTAGGTCACTGGGTCCACATAATTACCTATGTGGCCATTTAGATCTGAGCCCTAAGATCTATTCAAATGATGCATGGTACAACGTCATTGATGACGTAGACCCCAACTACCTAAAGCACTTTAAAGAAATCATGGGGGCCCAGAGGGACTGGCAAAGTAACACCAAGTACGGGAAGCCAGTTCAAATTAAAGGGGGCATTCCCACGATCTTCCTATGCAATCCTGGGCCCAATTCCAGCTATAAAGAGTTCCTCGATGAGGAAAAGAACTCAGCACTGAAGTCTTGGGCTATACACAATGCAACATTCATCACCCTCACAGAGCCACTGTACTCAGGTGCCCATTAA |
Protein Sequence | MSRAFRINAKNYFLTYPQCSLTKKEALYQLKNIHPPVNKKIIRICRELHEKGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIHGAKSSSDVKSYLEKTETPSIGESFRSMEDLHEGDNSQPMHAYAKAINTGSKSEPLRVIRELAPRDYVLKFPNLNANLDGIFSPQMEVYVSPFLSSSFDQVPEAIEEWASDNVMGPAARPLRPKSIVIEGDRRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPNYLKHFKEIMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKSWAIHNATFITLTEPLYSGAH |
NCBI Accession | YP_009051692.1 |
---|---|
Location | 2176-2361 |
Gene Name | AC4 |
Protein Name | AC4 |
Coding Region | ATGGAGCTAAATCAAGCTCGGACGTCAAGTCCTATCTGGAGAAGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGATGGAAGATCTGCACGAGGGGGACAACAGTCAGCCAATGCATGCTTACGCCAAGGCAATTAACACAGGCAGTAAGTCAGAGCCTCTTAGAGTCATTAGGGAATTAG |
Protein Sequence | MELNQARTSSPIWRRRRHPRLGRVSDRWKICTRGTTVSQCMLTPRQLTQAVSQSLLESLGN |
1 |
Shakir S, et al. Virol J. 2018 Aug 31;15(1):134. doi: 10.1186/s12985-018-1047-y. PMID: 30165872 |
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2 |
Recombinase polymerase amplification applied to plant virus detection and potential implications. Babu B, et al. Anal Biochem. 2018 Apr 1;546:72-77. doi: 10.1016/j.ab.2018.01.021. Epub 2018 Jan 31. PMID: 29408177 |
3 |
Interspecies Recombination-Led Speciation of a Novel Geminivirus in Pakistan. Lal A, et al. Viruses. 2022 Sep 30;14(10):2166. doi: 10.3390/v14102166. PMID: 36298721 |
4 |
No evidence of seed transmissibility of Tomato yellow leaf curl virus in Nicotiana benthamiana. Rosas-Díaz T, et al. J Zhejiang Univ Sci B. 2017 May;18(5):437-440. doi: 10.1631/jzus.B1600463. PMID: 28471116 |
5 |
Split-Luciferase Complementation Imaging Assay in Virus-Plant Interactions. Tan H, et al. Methods Mol Biol. 2024;2724:235-245. doi: 10.1007/978-1-0716-3485-1_17. PMID: 37987910 |
6 |
Huang CH, et al. Plant Dis. 2020 May;104(5):1318-1327. doi: 10.1094/PDIS-06-19-1223-RE. Epub 2020 Mar 16. PMID: 32181724 |
7 |
Du Z, et al. Virol J. 2015 Oct 7;12:163. doi: 10.1186/s12985-015-0397-y. PMID: 26445958 |
8 |
Khatri S, et al. Virus Genes. 2014 Aug;49(1):124-31. doi: 10.1007/s11262-014-1076-6. Epub 2014 Apr 30. PMID: 24781196 |
9 |
Gong P, et al. Nat Commun. 2021 Jul 13;12(1):4278. doi: 10.1038/s41467-021-24617-4. PMID: 34257307 |
10 |
Medina-Puche L, et al. Methods Mol Biol. 2024;2724:289-305. doi: 10.1007/978-1-0716-3485-1_21. PMID: 37987914 |