Rose leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000921455.1
Isolate India
Release date 2015/2/22
Submitter Nehra,C., Sahu,A.K., Gaur,R.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_024687
ACCGGATGGGCGCGCTTTTTTGTCCCCCCGTGGGTCCCACCAAGTGGTCCCTGGACACATGGCCCAATCAAAAGCACTCGTAAAAGCTCAATTGATTTGTGGGCCCCATATATAATTGCTTGCTGAGTAAGTTTTTTTTAAACATGTGGGACCCACTATTGAATGATTTTCCAGAAACTGTTCATGGGTTTAGGTGTATGCTAGCAATTAAATACTTGCAGCTAGTAAAAAATACGTTTTCCCCAGACACTCTGGGATACGATTTAATTGGGGATTTGATTTCAGTAATAAGGGCTAGGGATTATGTCGAAGCGACCCGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCCCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTCCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTAAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACAACAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCTGTTGACAAGCCTCAAGTTTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGCACGGGGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGGACGCAACTGTGACAGGTGGCCTGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATTTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCCACACTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAATAAAATTTATCAGTATCGAATTAATAAATATTGAATTTTATTGAAGATGATTGTTTTACATATACAATATGCTCTAATACATTCCATAATACATGATCAACTGCTCTAATTACTTTGTTAATACTGATAACTCCTAGATTATCTAAATACTTAAGGACTTGTGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATTCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGGGCAGTGATGATGTCTTGGTTCATGAGGAATCCCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCCCAGATAAACACCCCATTCTGTGCTTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGTGGGGGTTGATGTGTACGTAGTTTGGGCAGCCACACTCGAGGTCAACCCTCTTACGCCGGATGGCTCTACGCTTGGCCAGCCTGTGTTGGACCTTAATGGGCACCTGAGTACAGTGGCTCTGTGAGGGTGATGAATGTTGCATTGTGTATAGCCCAAGACTTCAGTGCTGAGTTCTTTTCCTCATCGAGGAACTCTTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATCGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGGCCCCCATGATTTCTTTAAAGTGCTTTAGGTAGTTGGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTTGAATAGATCTTAGGGCTCAGATCTAAATGGCCACATAGGTAATTATGTGGACCCAGTGACCTAGCCCACATTGTTTTCCCCGTACGCCTATCACCCTCAATGACGATACTTTTAGGTCTCAATGGCCGCGCAGCGGGACCCATCACATTATCAGAGGCCCATTCCTCTATGGCCTCTGGAACTTGATCGAAGGAAGAAGAAAGAAAAGGGGAAACATAAACCTCCATTTGGGGTGAAAAAATCCCATCTAGATTAGCATTAAGATTAGGAAATTTTAAGACATAATCCCTTGGTGCTAATTCCCTAATGACTCTAAGAGGCTCTGACTTACTGCCTGTGTTAATTGCCTTGGCGTAAGCATGCATTGGCTGACTGTTGTCCCCCTCGTGCAGATCTTCCATCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCTTCTCCAGATAGGACTTGACGTCCGAGCTTGATTTAGCTCCATGAATGTTAGGATGGAAATGTGCTGACCTGGTTGGCGATACCAGGTCGAAGAATCGGTTATTTGTGCACTGGTACTTCCCCTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCCTTTTCGTGAAGCTCTCTGCAGATCCTGATGATTTTTTTGTTTACTGGGGGGTGTATGTTTTTTAATTGATAGAGGGCTTCTTTTTTAGTTAGAGAGCATTGGGGATAAGTGAGGAAGTAATTCTTAGCATTTATGCGGAAGGCACGTGACATTTTGGCAATCGGTGTACACACTAATTCTCTGTCAATTGGTGTAAGGGGGTACAATATATACTTTTACACCAAATGGAAATTTGGTTTTTTGGGAACTTTAATTTGTAATATT

Gene Information

NCBI Accession YP_009051687.1
Location 144-509
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGACCCACTATTGAATGATTTTCCAGAAACTGTTCATGGGTTTAGGTGTATGCTAGCAATTAAATACTTGCAGCTAGTAAAAAATACGTTTTCCCCAGACACTCTGGGATACGATTTAATTGGGGATTTGATTTCAGTAATAAGGGCTAGGGATTATGTCGAAGCGACCCGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCCCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTCCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTAA
Protein Sequence MWDPLLNDFPETVHGFRCMLAIKYLQLVKNTFSPDTLGYDLIGDLISVIRARDYVEATRRYNHFHARLEGTPPSQLRQPICEPCCSPHCPRHKGKGMGEQAHEQKAQDVQDVQKPRCSEGM

NCBI Accession YP_009051688.1
Location 304-1074
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCCCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTCCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCGAGGGGATGTAAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACAACAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCTGTTGACAAGCCTCAAGTTTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGCACGGGGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGGACGCAACTGTGACAGGTGGCCTGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATTTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCCACACTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRPRLNFDSPYASRAAPPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCKGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENNKTKNHTNSVMFFLVRDRRPVDKPQVFGEVFNMFDNEPSTGTVKNVHRDRYQVLRKWDATVTGGLYASKEQALVKKFIRVNNYFVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009051689.1
Location 1095-1499
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCACAGAATGGGGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGGGATTCCTCATGAACCAAGACATCATCACTGCCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACACAAGTCCTTAAGTATTTAGATAATCTAGGAGTTATCAGTATTAACAAAGTAATTAGAGCAGTTGATCATGTATTATGGAATGTATTAGAGCATATTGTATATGTAAAACAATCATCTTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGESITAAQAQNGVFIWEVQNPLYFKITEHHNRGFLMNQDIITAQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLDNLGVISINKVIRAVDHVLWNVLEHIVYVKQSSSIKFNIY

NCBI Accession YP_009051690.1
Location 1240-1647
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCAACATTCATCACCCTCACAGAGCCACTGTACTCAGGTGCCCATTAAGGTCCAACACAGGCTGGCCAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGACCTCGAGTGTGGCTGCCCAAACTACGTACACATCAACCCCCACAACCATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCACAGAATGGGGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGGGATTCCTCATGAACCAAGACATCATCACTGCCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA
Protein Sequence MQHSSPSQSHCTQVPIKVQHRLAKRRAIRRKRVDLECGCPNYVHINPHNHGFTHRGIHHCSSSTEWGVYLGGSKSPLFQDNRAPQQGIPHEPRHHHCPDTVQSQPEESVGNTQMFPSLPNLDDLTASDWSFLKGL

NCBI Accession YP_009051691.1
Location 1598-2629
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGTCACGTGCCTTCCGCATAAATGCTAAGAATTACTTCCTCACTTATCCCCAATGCTCTCTAACTAAAAAAGAAGCCCTCTATCAATTAAAAAACATACACCCCCCAGTAAACAAAAAAATCATCAGGATCTGCAGAGAGCTTCACGAAAAGGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGGAAGTACCAGTGCACAAATAACCGATTCTTCGACCTGGTATCGCCAACCAGGTCAGCACATTTCCATCCTAACATTCATGGAGCTAAATCAAGCTCGGACGTCAAGTCCTATCTGGAGAAGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGATGGAAGATCTGCACGAGGGGGACAACAGTCAGCCAATGCATGCTTACGCCAAGGCAATTAACACAGGCAGTAAGTCAGAGCCTCTTAGAGTCATTAGGGAATTAGCACCAAGGGATTATGTCTTAAAATTTCCTAATCTTAATGCTAATCTAGATGGGATTTTTTCACCCCAAATGGAGGTTTATGTTTCCCCTTTTCTTTCTTCTTCCTTCGATCAAGTTCCAGAGGCCATAGAGGAATGGGCCTCTGATAATGTGATGGGTCCCGCTGCGCGGCCATTGAGACCTAAAAGTATCGTCATTGAGGGTGATAGGCGTACGGGGAAAACAATGTGGGCTAGGTCACTGGGTCCACATAATTACCTATGTGGCCATTTAGATCTGAGCCCTAAGATCTATTCAAATGATGCATGGTACAACGTCATTGATGACGTAGACCCCAACTACCTAAAGCACTTTAAAGAAATCATGGGGGCCCAGAGGGACTGGCAAAGTAACACCAAGTACGGGAAGCCAGTTCAAATTAAAGGGGGCATTCCCACGATCTTCCTATGCAATCCTGGGCCCAATTCCAGCTATAAAGAGTTCCTCGATGAGGAAAAGAACTCAGCACTGAAGTCTTGGGCTATACACAATGCAACATTCATCACCCTCACAGAGCCACTGTACTCAGGTGCCCATTAA
Protein Sequence MSRAFRINAKNYFLTYPQCSLTKKEALYQLKNIHPPVNKKIIRICRELHEKGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIHGAKSSSDVKSYLEKTETPSIGESFRSMEDLHEGDNSQPMHAYAKAINTGSKSEPLRVIRELAPRDYVLKFPNLNANLDGIFSPQMEVYVSPFLSSSFDQVPEAIEEWASDNVMGPAARPLRPKSIVIEGDRRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPNYLKHFKEIMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKSWAIHNATFITLTEPLYSGAH

NCBI Accession YP_009051692.1
Location 2176-2361
Gene Name AC4
Protein Name AC4
Coding Region ATGGAGCTAAATCAAGCTCGGACGTCAAGTCCTATCTGGAGAAGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGATGGAAGATCTGCACGAGGGGGACAACAGTCAGCCAATGCATGCTTACGCCAAGGCAATTAACACAGGCAGTAAGTCAGAGCCTCTTAGAGTCATTAGGGAATTAG
Protein Sequence MELNQARTSSPIWRRRRHPRLGRVSDRWKICTRGTTVSQCMLTPRQLTQAVSQSLLESLGN

References More References in PubMed

1

Characterization, phylogeny and recombination analysis of Pedilanthus leaf curl virus-Petunia isolate and its associated betasatellite.

Shakir S, et al.  Virol J. 2018 Aug 31;15(1):134. doi: 10.1186/s12985-018-1047-y.

PMID: 30165872
2

Recombinase polymerase amplification applied to plant virus detection and potential implications.

Babu B, et al.  Anal Biochem. 2018 Apr 1;546:72-77. doi: 10.1016/j.ab.2018.01.021. Epub 2018 Jan 31.

PMID: 29408177
3

Interspecies Recombination-Led Speciation of a Novel Geminivirus in Pakistan.

Lal A, et al.  Viruses. 2022 Sep 30;14(10):2166. doi: 10.3390/v14102166.

PMID: 36298721
4

No evidence of seed transmissibility of Tomato yellow leaf curl virus in Nicotiana benthamiana.

Rosas-Díaz T, et al.  J Zhejiang Univ Sci B. 2017 May;18(5):437-440. doi: 10.1631/jzus.B1600463.

PMID: 28471116
5

Split-Luciferase Complementation Imaging Assay in Virus-Plant Interactions.

Tan H, et al.  Methods Mol Biol. 2024;2724:235-245. doi: 10.1007/978-1-0716-3485-1_17.

PMID: 37987910
6

Characterization of a New Monopartite Begomovirus with a Betasatellite Associated with Leaf Curl, Yellow Vein, and Vein Enation in Hibiscus rosa-sinensis.

Huang CH, et al.  Plant Dis. 2020 May;104(5):1318-1327. doi: 10.1094/PDIS-06-19-1223-RE. Epub 2020 Mar 16.

PMID: 32181724
7

High genetic homogeneity points to a single introduction event responsible for invasion of Cotton leaf curl Multan virus and its associated betasatellite into China.

Du Z, et al.  Virol J. 2015 Oct 7;12:163. doi: 10.1186/s12985-015-0397-y.

PMID: 26445958
8

A betasatellite-dependent begomovirus infects ornamental rose: characterization of begomovirus infecting rose in Pakistan.

Khatri S, et al.  Virus Genes. 2014 Aug;49(1):124-31. doi: 10.1007/s11262-014-1076-6. Epub 2014 Apr 30.

PMID: 24781196
9

Geminiviruses encode additional small proteins with specific subcellular localizations and virulence function.

Gong P, et al.  Nat Commun. 2021 Jul 13;12(1):4278. doi: 10.1038/s41467-021-24617-4.

PMID: 34257307
10

Immunoprecipitation Followed by Mass Spectrometry: An Approach for Identifying Host-Viral Protein-Protein Interactions.

Medina-Puche L, et al.  Methods Mol Biol. 2024;2724:289-305. doi: 10.1007/978-1-0716-3485-1_21.

PMID: 37987914