Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_002986835.1 |
Isolate | Pakistan:Lahore |
Release date | 2018/8/26 |
Submitter | Ilyas,M., Qazi,J., Mansoor,S., Briddon,R.W. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009508134.1 |
---|---|
Location | 145-513 |
Gene Name | av2 |
Protein Name | pre-coat |
Coding Region | ATGTGGGATCCGCTGTTGAACGACTTTCCGCTCTCAGTGCATGGTTTTCGATGTATGCTTGCAATTAAGTATTTGCACGCTGTCCAAGAGGGTTACCCCCCGCATTCTTTGGGTTATTTGCTTTTGCAGGAGTTAGTGCGGATAGTGCGCTGTAGGGACCATGCGAAAGCGGAGCTACGATACGGCATTCTCAAGTCCGATGTCATCAGCGCGGAGAAGACTGACCTTCGACAGCCCTTTGGCCCTACCTGCTCCTGCTTTACGTGCCCCCACCACGGTCAAAAGAAGGTCATGGGCCAATCGCCCCATGAATCGGAAGCCCCGCTATTATCGATTGTACCGCACTCCGGACGTCCCGCGCGGCTGTGA |
Protein Sequence | MWDPLLNDFPLSVHGFRCMLAIKYLHAVQEGYPPHSLGYLLLQELVRIVRCRDHAKAELRYGILKSDVISAEKTDLRQPFGPTCSCFTCPHHGQKKVMGQSPHESEAPLLSIVPHSGRPARL |
NCBI Accession | YP_009508135.1 |
---|---|
Location | 305-1078 |
Gene Name | av1 |
Protein Name | coat protein |
Coding Region | ATGCGAAAGCGGAGCTACGATACGGCATTCTCAAGTCCGATGTCATCAGCGCGGAGAAGACTGACCTTCGACAGCCCTTTGGCCCTACCTGCTCCTGCTTTACGTGCCCCCACCACGGTCAAAAGAAGGTCATGGGCCAATCGCCCCATGAATCGGAAGCCCCGCTATTATCGATTGTACCGCACTCCGGACGTCCCGCGCGGCTGTGAGGGCCCATGTAAGGTTCAGTCATTTGAACAGCGTCACGACATATCACATGTTGGTAAGGTGATATGCATTTCGGATGTGACACGTGGTAACGGTATTACTCATCGTGTCGGCAAACGTTTTTGCATCAAGTCTGTTTACATTACAGGGAAAATTTGGATGGATGAAAACATCAAGACCAAGAATCACACCAACAGTGTGATGTTTAAGCTCGTTAGAGACAGGAGGCCGTTTGGAACGGCGATGGATTTTGGACAAGTTTTTAACATGTATGATAATGAGCCTAGTACCGCTACGGTGAAGAACGATTTGCGTGATCGTTATCAAGTTTTGCGCAAGTTTCATCATACTGTAACCGGTGGTCAGTATGCGAGCAAGGAACAAGCTATAGTTAATAGGTTTTATCGTGTAAACAACCACGTAGTGTATAACCATCAGGAAGCAGCCAAGTATGAGAACCATACTGAAAACGCTTTGTTATTGTATATGGCATGTACTCATGCTTCAAACCCAGTGTATGCAACATTAAAGATTCGGATCTATTTTTACGATTCGATATCAAATTAA |
Protein Sequence | MRKRSYDTAFSSPMSSARRRLTFDSPLALPAPALRAPTTVKRRSWANRPMNRKPRYYRLYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICISDVTRGNGITHRVGKRFCIKSVYITGKIWMDENIKTKNHTNSVMFKLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDLRDRYQVLRKFHHTVTGGQYASKEQAIVNRFYRVNNHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN |
NCBI Accession | YP_009508136.1 |
---|---|
Location | 557-973 |
Gene Name | ac5 |
Protein Name | AC5 protein |
Coding Region | ATGGTTCTCATACTTGGCTGCTTCCTGATGGTTATACACTACGTGGTTGTTTACACGATAAAACCTATTAACTATAGCTTGTTCCTTGCTCGCATACTGACCACCGGTTACAGTATGATGAAACTTGCGCAAAACTTGATAACGATCACGCAAATCGTTCTTCACCGTAGCGGTACTAGGCTCATTATCATACATGTTAAAAACTTGTCCAAAATCCATCGCCGTTCCAAACGGCCTCCTGTCTCTAACGAGCTTAAACATCACACTGTTGGTGTGATTCTTGGTCTTGATGTTTTCATCCATCCAAATTTTCCCTGTAATGTAAACAGACTTGATGCAAAAACGTTTGCCGACACGATGAGTAATACCGTTACCACGTGTCACATCCGAAATGCATATCACCTTACCAACATGTGA |
Protein Sequence | MVLILGCFLMVIHYVVVYTIKPINYSLFLARILTTGYSMMKLAQNLITITQIVLHRSGTRLIIIHVKNLSKIHRRSKRPPVSNELKHHTVGVILGLDVFIHPNFPCNVNRLDAKTFADTMSNTVTTCHIRNAYHLTNM |
NCBI Accession | YP_009508137.1 |
---|---|
Location | 1075-1482 |
Gene Name | ac3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAGAGCATCACTGCTGCTCAGCAGGCGAATGGCGTCTATATCTGGGACGTAACAAATCCCCTGTCTTTCAAGATAATGCAACACCAGAACGCACTCCTGGGCAGCAACGTGAAGAAAACCCAGATCCGCATAATGTTCAACCATCAGCTGAAGAAAGCGTTGGGGATGCACAAGTGTTTCCTGGACTTGACGATATTCCATCAATGGATTCACAGCTGTGGGCGGATCTGCTTAACTTTTAAAAATATGTTGCTTAGATTTTTAAATAAATTAGGAGTTATAAGCATCCAAACTGTATTAGCAGGATGCACAAATGTATTATGCGACCAATTAAAGGTCGCTTATGATGATGTACACCTTTCCCATGAAATAAAATACAATATTTATTAA |
Protein Sequence | MDSRTGESITAAQQANGVYIWDVTNPLSFKIMQHQNALLGSNVKKTQIRIMFNHQLKKALGMHKCFLDLTIFHQWIHSCGRICLTFKNMLLRFLNKLGVISIQTVLAGCTNVLCDQLKVAYDDVHLSHEIKYNIY |
NCBI Accession | YP_009508138.1 |
---|---|
Location | 1223-1636 |
Gene Name | ac2 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCGGAATTCTACACCCTCGAAGCACCACTGTTCACCTCCGTCAATCAAAGCGCAACACAGGTTCGCCAAGAAGAAACCCAGAGCAATTCGCAGAACCCGAATTGATTTACGCTGTGGGTGCTCTTACTACTTCCACGTCAACTGTCGCAACTATGGATTCACGCACAGGGGAGAGCATCACTGCTGCTCAGCAGGCGAATGGCGTCTATATCTGGGACGTAACAAATCCCCTGTCTTTCAAGATAATGCAACACCAGAACGCACTCCTGGGCAGCAACGTGAAGAAAACCCAGATCCGCATAATGTTCAACCATCAGCTGAAGAAAGCGTTGGGGATGCACAAGTGTTTCCTGGACTTGACGATATTCCATCAATGGATTCACAGCTGTGGGCGGATCTGCTTAACTTTTAA |
Protein Sequence | MRNSTPSKHHCSPPSIKAQHRFAKKKPRAIRRTRIDLRCGCSYYFHVNCRNYGFTHRGEHHCCSAGEWRLYLGRNKSPVFQDNATPERTPGQQREENPDPHNVQPSAEESVGDAQVFPGLDDIPSMDSQLWADLLNF |
NCBI Accession | YP_009508139.1 |
---|---|
Location | 1530-2624 |
Gene Name | ac1 |
Protein Name | replication initiation protein |
Coding Region | ATGCCAACTCCAGGTCGTTTTTGCATAAACGCTAAGAACTACTTCTTAACCTATCCTCGCTGTCCTCTATCCAAAGAAGAAACACTTTCGCAGCTCCTTGCGTTACAAACGCCTACTAACAAGAAGTTCATCAGGGTCTCTCGTGAACTACACGAAGATGGAACACCTCATCTCCATGTTCTGCTGCAATTCGAAGGGAAGTTCCAAACCAGAAACCAAAGGTTCTTCGACCTGGTATCCCAAACCAGGTCAGCACATTACCATCCAAACGTTCAGGCGGCTAAGAGCGCCTCAGATGTTAAACAATACGTGGAGAAAGACGGAGACTACATTGACCATGGAGATTTCCAAGTCGATGGACGCTCAGCTAGAGGAGGTAAGCAGTCTGCCAACGACGCTTATGCCGAAGCAATCAATGCAGAGTCCAAATCAGAGGCGCTCACTATACTGAAGGAGAAAGCCCCAAAGGATTACGTCTTACAATTTCATAATTTAAATTGTAATTTAGATAGGATTTTTGTCCCTCCGGTCCCTATTTACAGTTCGCCGTTCAACCTAGCTACATTCAACAATGTTCCAGAAGGTCTCCGTGCCTGGGCTGAACAGAACGTGAAGGATTCCGCTGCGCGGCCACATAGACCTATTAGTGTCGTTATCGAGGGCGATAGTCGTACGGGTAAAACCATGTGGGCAAGAGCCTTAGGTCGACACAATTACTTGTGTGGTCATTTAGATTTGAGCGCCAAAATGTATTCAAACGACGCATGGTACAACGTAATCGATGACGTTGATCCGCACTATCTAAAGCATTTTAAAGAGTTCATGGGCGCTCAGAGAGACTGGCAAAGCAACGTGAAATACGGAAAGCCCACTCACATTAAAGGAGGTATCCCCACCATATTCCTATGCAATCCGGGGCCCAGATCCTCCTATAAAGAGTATCTAGACGAGGCAAACAACGCATCGCTCAAATCGTGGGCTTTAAAGAATGCGGAATTCTACACCCTCGAAGCACCACTGTTCACCTCCGTCAATCAAAGCGCAACACAGGTTCGCCAAGAAGAAACCCAGAGCAATTCGCAGAACCCGAATTGA |
Protein Sequence | MPTPGRFCINAKNYFLTYPRCPLSKEETLSQLLALQTPTNKKFIRVSRELHEDGTPHLHVLLQFEGKFQTRNQRFFDLVSQTRSAHYHPNVQAAKSASDVKQYVEKDGDYIDHGDFQVDGRSARGGKQSANDAYAEAINAESKSEALTILKEKAPKDYVLQFHNLNCNLDRIFVPPVPIYSSPFNLATFNNVPEGLRAWAEQNVKDSAARPHRPISVVIEGDSRTGKTMWARALGRHNYLCGHLDLSAKMYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNVKYGKPTHIKGGIPTIFLCNPGPRSSYKEYLDEANNASLKSWALKNAEFYTLEAPLFTSVNQSATQVRQEETQSNSQNPN |
NCBI Accession | YP_009508140.1 |
---|---|
Location | 2174-2467 |
Gene Name | ac4 |
Protein Name | AC4 protein |
Coding Region | ATGGAACACCTCATCTCCATGTTCTGCTGCAATTCGAAGGGAAGTTCCAAACCAGAAACCAAAGGTTCTTCGACCTGGTATCCCAAACCAGGTCAGCACATTACCATCCAAACGTTCAGGCGGCTAAGAGCGCCTCAGATGTTAAACAATACGTGGAGAAAGACGGAGACTACATTGACCATGGAGATTTCCAAGTCGATGGACGCTCAGCTAGAGGAGGTAAGCAGTCTGCCAACGACGCTTATGCCGAAGCAATCAATGCAGAGTCCAAATCAGAGGCGCTCACTATACTGA |
Protein Sequence | MEHLISMFCCNSKGSSKPETKGSSTWYPKPGQHITIQTFRRLRAPQMLNNTWRKTETTLTMEISKSMDAQLEEVSSLPTTLMPKQSMQSPNQRRSLY |
NCBI Accession | YP_009508141.1 |
---|---|
Location | 415-1182 |
Gene Name | bv1 |
Protein Name | nuclear shuttle protein |
Coding Region | ATGTTTAATCGTAATTTTCGCTCCCCTCGCACTCCCAGGGTTTTTAATTCTCGTTTTCGTTTTCCATTAACACCCCTTAGAGGTGGTGTTAAACGACGTCCATATGGTGCTACGCGAAAATTAAATTATGACCGTGTAGAACGTCCTCTTTCCGTCAATGTGTTAGTTGAACGGCAACATGGCCCTCATATGGCGCTTAGCAACAACCATGATTCCACGTCTTTTGTTGGATTTCCTGTACGTGGAATAAATGGCGATGGTCGTTCTAAGGAGTATATTAAGCTGATGCAGTTGAATGTATCTGGGGTGCTTAACGTCAAAGCAGCTCAAGGCGATCAGCCAATGGAAGGAAATGACAAATTAACTGGGTTATTTGTCATAACAATATTGTTGGACCGTAAGCCTTTTCTTCCAGAAGGAGTTAATCAACTGCCTAGCTATGCCGAGTTATTTGGACCATATTCTTCGGCGTATGTTAATCAGCACGTGTTAGACGTGCATAAGCAGCGTTTTAGGATTTTAGGTTGCATTAAAAAATATGTTACGTGTAGTGGTGGTGCTTATTATGCACCATTTAAGCTTAATGTTAAGTTGTCGCATAACCGTTTCCCTTTGTGGGCTGCTTTTAAGGATGTAGATCCTGGCAACTGCGGAGGCAATTACAAGAATATTGCTAAGAACGCAATATTAGTTAGTTATGCGTTTGTTGGGATGGACTCTTTAAAGGTCGAACCCTTTGTACAATTTGAATTAAAATATTTGGGATAA |
Protein Sequence | MFNRNFRSPRTPRVFNSRFRFPLTPLRGGVKRRPYGATRKLNYDRVERPLSVNVLVERQHGPHMALSNNHDSTSFVGFPVRGINGDGRSKEYIKLMQLNVSGVLNVKAAQGDQPMEGNDKLTGLFVITILLDRKPFLPEGVNQLPSYAELFGPYSSAYVNQHVLDVHKQRFRILGCIKKYVTCSGGAYYAPFKLNVKLSHNRFPLWAAFKDVDPGNCGGNYKNIAKNAILVSYAFVGMDSLKVEPFVQFELKYLG |
NCBI Accession | YP_009508142.1 |
---|---|
Location | 1225-2121 |
Gene Name | bc1 |
Protein Name | movement protein |
Coding Region | ATGGACAATTACTCAGGAGCAGTCGTCAACAACAAATACATAGAATCAAAGCGTTGTGAATATCGCCTAACAAACAACGAAACACCTATCATGCTCCAATTCCCTTCGTCATTAGAACAAACGAAGGTCAGAATGTTAGGCAAATGCATGAAAGTTGATCATATCGTCATAGAATACCGTAACCAAGTCCCGTTTAACGCCACTGGATCAGTTATAGTCACCATACGTGACACAAGACTAAGTCATGAACAAGCTGCACAGGCAGCTTTTACGTTCCCAATTGCCTGCAACGTCRATTTACATTACTTCTCCTCATCATTCTTCTCGCTAAAAGACGAGACACCATGGGAGCTAGTATACAAGGTTGAAGATTCTAACGTAATCGACGGAACCACATTTGCCCAGATTAAAGGCAAGTTAAAGCTATCATCGGCAAAACATTCAACGGACATAAGGTTTAAACCACCCACAATTAATATCCTATCAAAGGATTTCACAAAGGATTGTGTCGACTTCTGGTCCGTTGACAAGCCCAAACCAATTAGAAGACTATTAAATCCTGGTCCAGGTTATGGGCCCGATGGGCATGAAAGGCATAAGCCCATTATGCTACAGCCAGGTGAAACGTGGGCCACAAGGTCCACCATCGGAAGAACCACATCAATGCGTTACGCCCCAACAGAAAGAATAGCGCTGGACGACAAGCCCAGTTGTTCGGAAGCCGAATACCCACTAAAACACATGCATAAGTTACCAGAGTCGTCTCTTGACCCAGGAGACTCGGTATCACAAACAACCTCCAACGCTATGACCAAGCAGGACATCGAAGAACTGATAGAGACGACAATAAATAAATGCTTAATAACGCAAAGGTCGACTATATCGAAACCGTTGTAG |
Protein Sequence | MDNYSGAVVNNKYIESKRCEYRLTNNETPIMLQFPSSLEQTKVRMLGKCMKVDHIVIEYRNQVPFNATGSVIVTIRDTRLSHEQAAQAAFTFPIACNVBLHYFSSSFFSLKDETPWELVYKVEDSNVIDGTTFAQIKGKLKLSSAKHSTDIRFKPPTINILSKDFTKDCVDFWSVDKPKPIRRLLNPGPGYGPDGHERHKPIMLQPGETWATRSTIGRTTSMRYAPTERIALDDKPSCSEAEYPLKHMHKLPESSLDPGDSVSQTTSNAMTKQDIEELIETTINKCLITQRSTISKPL |
1 |
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2 |
Idris AM, et al. Plant Dis. 2002 May;86(5):558. doi: 10.1094/PDIS.2002.86.5.558C. PMID: 30818684 |
3 |
Dokka N, et al. Plant Dis. 2023 Oct;107(10):2924-2928. doi: 10.1094/PDIS-06-22-1473-SC. Epub 2023 Oct 11. PMID: 36890129 |
4 |
First Report and Characterization of Rhynchosia golden mosaic virus in Honduras. Potter JL, et al. Plant Dis. 2000 Sep;84(9):1045. doi: 10.1094/PDIS.2000.84.9.1045A. PMID: 30832009 |
5 |
First Report of Rhynchosia golden mosaic virus (RhGMV) Infecting Tobacco in Chiapas, Mexico. Ascencio-Ibáñez JT, et al. Plant Dis. 2002 Jun;86(6):692. doi: 10.1094/PDIS.2002.86.6.692C. PMID: 30823249 |
6 |
Méndez-Lozano J, et al. Plant Dis. 2006 Jul;90(7):972. doi: 10.1094/PD-90-0972B. PMID: 30781046 |
7 |
Two novel begomoviruses belonging to different lineages infecting Rhynchosia minima. Fiallo-Olivé E, et al. Arch Virol. 2010 Dec;155(12):2053-8. doi: 10.1007/s00705-010-0803-0. Epub 2010 Sep 18. PMID: 20852903 |
8 |
Jyothsna P, et al. Virus Genes. 2011 Jun;42(3):407-14. doi: 10.1007/s11262-011-0580-1. Epub 2011 Feb 12. PMID: 21318241 |
9 |
Nava A, et al. Arch Virol. 2013 Feb;158(2):399-406. doi: 10.1007/s00705-012-1501-x. Epub 2012 Oct 14. PMID: 23064695 |
10 |
Whitefly-transmitted yellow mosaic and mottle of Rhynchosia minima L. (Viciaceae) in Cuba. Kvícala BA. Zentralbl Bakteriol Naturwiss. 1978;133(5):451-5. PMID: 726718 |