Pumpkin yellow mosaic virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000874505.1
Isolate Malaysia: Negeri Sembilan
Release date 2015/2/13
Submitter Tsai,W.S., Shih,S.L., Roff,M.M.N., Green,S.K.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_010946
ACCGGATGGCCGCGCTTTTTTTATGTGGGCCCTCGACCAATGAAATTCACGCTACATGGCTTATTTATTACATGGGGACCATTAAATAGACTTCCTCACCAAGTTTTGATCCACACCATGTGGGATCCACTTCTGCACGAATTTCCTGAAAGTGTTCATGGTCTAAGGTGCATGCTAGCGGTGAAATATCTTCAGGAAGTGGAAAAAACATATTCTCCGGACACAGTCGGCTACGATCTTGTCCGCGATCTTATTCTTGTTCTCCGCGCAAAGAACTATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAGAAGTCCCGACGTGCCAAGGGGCTGTGAAGGCCCTTGTAAAGTTCAATCCTTTGAATCTAGGCACGATGTCTCTCATATTGGGAAGGTATTGTGTATCAGTGATGTTACACGAGGAACCGGACTCACACATCGCGTTGGGAAGCGATTCTGTGTGAAATCTGTTTTTGTTTTGGGAAAGATATGGGTGGATGAAAATATCAAGACTAAAAATCACACTAATAGCGTTATATTGTTTTTGGTTCGAGACCGTCGTCCTACAAGAACTCCACAAGATTTTGGGGAGGTTTTTAATATGTTCGACAATGAACCGAGCACTGCAACGGTGAAGAACATGCATCGTGATCGATACCAAGTGATACGCAAATGGCATGCCACTGTGACGGGAGGAACATACGCATCAAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGAGTCAATAATTATGTTGTCTACAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCGAACCCTGTATACGCGACTTTGAAAATTCGGATCTATTTTTATGATTCGGTAACAAATTAATATATATTCAATTTCACATTATATGTTGTCCATACATCAATTGTCTTTTCCAATACATCGTCTAAAACGTGATAAACTGCTCTTAATACATTGTAAATACTAATCACCCCTAACATATCCAAGTACTTAAGGACTTGGGTCTTAAAGACTCTCAAGAAAATCCCAGTCGGAGGGCGTAAGCCCGTCCAGATCTGGAACATTAGAACACATTTGTGAAGTCCCAGTGCTTTCCGCAGTTTGTGGTTGAACATTACATGCATTTTGATTATGTCGTGTTCCGTGAGACAAGGTCTGATGTCGTGTTTCAATATTTTGAAATAGAGGGGATTTGGAACTTCCCAGATATATACGCCACTCTCTGCTCGATCCACAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGGCAATTTATTGACATGTAATACGAGCATCCGCACGGTAGATCAATTCGTCTGCGCCTGATATTCTTCTTCTTGTTGTGCGGTAGCGATTTTTTCGCGACCGGAATAGAGTGGTTCTTTGATTGTGAGGAAGATTGCATTCTTTAATGCCCACTGCTTCAGTGCTGAATTCTTATCCTCTTCCAAGTACTCTTTATATGATGACGTTGGTCCTGGATTGCATAGGAAGATTGTCGGGATACCACCTTTAATTTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGCTTTAAATAGTGGGGGTCGACGTCATCAATGACGTTGTACCATGCATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGGCCCAATGAACGAGCCCACATTGTCCTTCCTGTACGACTCTCACCCTCTATGACAATACTTATGGGTCTATTTGGCCGCGCAGCGGAACACCCCACGTTCTCAGAAACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGAAAAATATAATCTTTTGGGAGTTTCTCCCTTATTATACTTAGTGCTGCTTCTTTGGAACCTGCGTTTAAGGCTTCTGCGCATGCGTCGTTAGAATTCTGGCACCCTCCTCTAGCACTTCGACCGTCGATCTGGAATTCTCCCCAGTCGAGGGTGTCTCCGTCCTTGTCCAGGTAGGATTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTAGACTTGGTTGGGGATACCAAGTCGAAGAATCTGTTATTCGTGCAGTTGCATTTGCCTTCGAATTGAATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGCAGCTCTCTACAGATTTTGATATATTTTTTATTTGTTGGGGTTTGTAGAGGTTTTAATTGGGAAAGTGCTTCTTCCTTGGTGAGGGAGCACTGTGGATAAGTGAGAAAATAATTTTTGGCTTTAATAGAAAAACGTCCGGCTCTAGGCATTTTGGAATTGGGGGGCACTCTAAGTCTCTGCAATCGGGGGAACTGGGGGGCAATTTATATGTGCCCCCCAAATGGCAAAATAGTAATTATGTAAATAATTACTTTAATTCAAAATGAATAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_001974387.1
Location 40-456
Protein Name precoat protein
Coding Region ATGAAATTCACGCTACATGGCTTATTTATTACATGGGGACCATTAAATAGACTTCCTCACCAAGTTTTGATCCACACCATGTGGGATCCACTTCTGCACGAATTTCCTGAAAGTGTTCATGGTCTAAGGTGCATGCTAGCGGTGAAATATCTTCAGGAAGTGGAAAAAACATATTCTCCGGACACAGTCGGCTACGATCTTGTCCGCGATCTTATTCTTGTTCTCCGCGCAAAGAACTATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAG
Protein Sequence MKFTLHGLFITWGPLNRLPHQVLIHTMWDPLLHEFPESVHGLRCMLAVKYLQEVEKTYSPDTVGYDLVRDLILVLRAKNYVEATSRYYHFNSRVEGTPTSQLRQPLCFPCSCPHCPRHKGKGLDKQADEQKTQDVQNV

NCBI Accession YP_001974388.1
Location 278-1048
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAGAAGTCCCGACGTGCCAAGGGGCTGTGAAGGCCCTTGTAAAGTTCAATCCTTTGAATCTAGGCACGATGTCTCTCATATTGGGAAGGTATTGTGTATCAGTGATGTTACACGAGGAACCGGACTCACACATCGCGTTGGGAAGCGATTCTGTGTGAAATCTGTTTTTGTTTTGGGAAAGATATGGGTGGATGAAAATATCAAGACTAAAAATCACACTAATAGCGTTATATTGTTTTTGGTTCGAGACCGTCGTCCTACAAGAACTCCACAAGATTTTGGGGAGGTTTTTAATATGTTCGACAATGAACCGAGCACTGCAACGGTGAAGAACATGCATCGTGATCGATACCAAGTGATACGCAAATGGCATGCCACTGTGACGGGAGGAACATACGCATCAAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGAGTCAATAATTATGTTGTCTACAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCGAACCCTGTATACGCGACTTTGAAAATTCGGATCTATTTTTATGATTCGGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYVSRAVVPIARVTKGKAWTNRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVLCISDVTRGTGLTHRVGKRFCVKSVFVLGKIWVDENIKTKNHTNSVILFLVRDRRPTRTPQDFGEVFNMFDNEPSTATVKNMHRDRYQVIRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_001974389.1
Location 1045-1455
Protein Name C3 protein
Coding Region ATGATCACGGATTCACGCACAGGGGAGTACATCACTGTGGATCGAGCAGAGAGTGGCGTATATATCTGGGAAGTTCCAAATCCCCTCTATTTCAAAATATTGAAACACGACATCAGACCTTGTCTCACGGAACACGACATAATCAAAATGCATGTAATGTTCAACCACAAACTGCGGAAAGCACTGGGACTTCACAAATGTGTTCTAATGTTCCAGATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGAGTCTTTAAGACCCAAGTCCTTAAGTACTTGGATATGTTAGGGGTGATTAGTATTTACAATGTATTAAGAGCAGTTTATCACGTTTTAGACGATGTATTGGAAAAGACAATTGATGTATGGACAACATATAATGTGAAATTGAATATATATTAA
Protein Sequence MITDSRTGEYITVDRAESGVYIWEVPNPLYFKILKHDIRPCLTEHDIIKMHVMFNHKLRKALGLHKCVLMFQIWTGLRPPTGIFLRVFKTQVLKYLDMLGVISIYNVLRAVYHVLDDVLEKTIDVWTTYNVKLNIY

NCBI Accession YP_001974390.1
Location 1190-1594
Protein Name C2 protein
Coding Region ATGCAATCTTCCTCACAATCAAAGAACCACTCTATTCCGGTCGCGAAAAAATCGCTACCGCACAACAAGAAGAAGAATATCAGGCGCAGACGAATTGATCTACCGTGCGGATGCTCGTATTACATGTCAATAAATTGCCATGATCACGGATTCACGCACAGGGGAGTACATCACTGTGGATCGAGCAGAGAGTGGCGTATATATCTGGGAAGTTCCAAATCCCCTCTATTTCAAAATATTGAAACACGACATCAGACCTTGTCTCACGGAACACGACATAATCAAAATGCATGTAATGTTCAACCACAAACTGCGGAAAGCACTGGGACTTCACAAATGTGTTCTAATGTTCCAGATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGAGTCTTTAA
Protein Sequence MQSSSQSKNHSIPVAKKSLPHNKKKNIRRRRIDLPCGCSYYMSINCHDHGFTHRGVHHCGSSREWRIYLGSSKSPLFQNIETRHQTLSHGTRHNQNACNVQPQTAESTGTSQMCSNVPDLDGLTPSDWDFLESL

NCBI Accession YP_001974391.1
Location 1497-2582
Protein Name replication-associated protein C1
Coding Region ATGCCTAGAGCCGGACGTTTTTCTATTAAAGCCAAAAATTATTTTCTCACTTATCCACAGTGCTCCCTCACCAAGGAAGAAGCACTTTCCCAATTAAAACCTCTACAAACCCCAACAAATAAAAAATATATCAAAATCTGTAGAGAGCTGCACGAAGATGGGAGCCCTCATCTCCATGTGCTCATTCAATTCGAAGGCAAATGCAACTGCACGAATAACAGATTCTTCGACTTGGTATCCCCAACCAAGTCTACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAATCCTACCTGGACAAGGACGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGTCGAAGTGCTAGAGGAGGGTGCCAGAATTCTAACGACGCATGCGCAGAAGCCTTAAACGCAGGTTCCAAAGAAGCAGCACTAAGTATAATAAGGGAGAAACTCCCAAAAGATTATATTTTTCAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCATTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGTTTCTGAGAACGTGGGGTGTTCCGCTGCGCGGCCAAATAGACCCATAAGTATTGTCATAGAGGGTGAGAGTCGTACAGGAAGGACAATGTGGGCTCGTTCATTGGGCCCACATAATTATCTGTGCGGTCATCTAGATCTGAGTCCAAAGGTGTACAGCAACGATGCATGGTACAACGTCATTGATGACGTCGACCCCCACTATTTAAAGCATTTCAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGAAAGCCAATTCAAATTAAAGGTGGTATCCCGACAATCTTCCTATGCAATCCAGGACCAACGTCATCATATAAAGAGTACTTGGAAGAGGATAAGAATTCAGCACTGAAGCAGTGGGCATTAAAGAATGCAATCTTCCTCACAATCAAAGAACCACTCTATTCCGGTCGCGAAAAAATCGCTACCGCACAACAAGAAGAAGAATATCAGGCGCAGACGAATTGA
Protein Sequence MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQLKPLQTPTNKKYIKICRELHEDGSPHLHVLIQFEGKCNCTNNRFFDLVSPTKSTHFHPNIQGAKSSSDVKSYLDKDGDTLDWGEFQIDGRSARGGCQNSNDACAEALNAGSKEAALSIIREKLPKDYIFQFHNLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVGCSAARPNRPISIVIEGESRTGRTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLEEDKNSALKQWALKNAIFLTIKEPLYSGREKIATAQQEEEYQAQTN

NCBI Accession YP_001974392.1
Location 2168-2425
Protein Name C4 protein
Coding Region ATGGGAGCCCTCATCTCCATGTGCTCATTCAATTCGAAGGCAAATGCAACTGCACGAATAACAGATTCTTCGACTTGGTATCCCCAACCAAGTCTACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAATCCTACCTGGACAAGGACGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGTCGAAGTGCTAGAGGAGGGTGCCAGAATTCTAACGACGCATGCGCAGAAGCCTTAA
Protein Sequence MGALISMCSFNSKANATARITDSSTWYPQPSLHISIRTFRELNPAPTSNPTWTRTETPSTGENSRSTVEVLEEGARILTTHAQKP

References More References in PubMed

1

Three-dimensional quantitative imaging of Tobacco mosaic virus and Zucchini yellow mosaic virus induced ultrastructural changes.

Zechmann B, et al.  Protoplasma. 2021 Nov;258(6):1201-1211. doi: 10.1007/s00709-021-01626-0. Epub 2021 Feb 22.

PMID: 33619654

2

Complete Genome Sequence of a Zucchini Yellow Mosaic Virus Isolated from Pumpkin in Oklahoma.

Khanal V, et al.  Microbiol Resour Announc. 2019 Jan 10;8(2):e01583-18. doi: 10.1128/MRA.01583-18. eCollection 2019 Jan.

PMID: 30643904

3

First report of Moroccan watermelon mosaic virus in pumpkin plants in Brazil.

Silva BA, et al.  Plant Dis. 2023 Nov 30. doi: 10.1094/PDIS-08-23-1536-PDN. Online ahead of print.

PMID: 38035787

4

Epidemiology of Zucchini yellow mosaic virus in cucurbit crops in a remote tropical environment.

Clarke R, et al.  Virus Res. 2020 May;281:197897. doi: 10.1016/j.virusres.2020.197897. Epub 2020 Feb 19.

PMID: 32087188

5

First Report of Squash Mosaic Virus in Ornamental Pumpkin in the Czech Republic.

Svoboda J, et al.  Plant Dis. 2011 Oct;95(10):1321. doi: 10.1094/PDIS-05-11-0444.

PMID: 30731671

6

First Report of Zucchini yellow mosaic virus in Watermelon in Serbia.

Vučurović A, et al.  Plant Dis. 2012 Jan;96(1):149. doi: 10.1094/PDIS-08-11-0664.

PMID: 30731890

7

First Report of Zucchini yellow mosaic virus in Cucurbits in Ivory Coast.

Koné D, et al.  Plant Dis. 2010 Nov;94(11):1378. doi: 10.1094/PDIS-06-10-0416.

PMID: 30743639

8

Detection of disease in Cucurbita maxima Duch. ex Lam. caused by a mixed infection of Zucchini yellow mosaic virus, Watermelon mosaic virus, and Cucumber mosaic virus in Southeast China using a novel small RNA sequencing method.

Wang Y, et al.  PeerJ. 2019 Oct 23;7:e7930. doi: 10.7717/peerj.7930. eCollection 2019.

PMID: 31660276

9

In vivo Antiphytoviral Activity of Essential Oils and Hydrosols From Origanum vulgare, Thymus vulgaris, and Rosmarinus officinalis to Control Zucchini Yellow Mosaic Virus and Tomato Leaf Curl New Delhi Virus in Cucurbita pepo L.

Taglienti A, et al.  Front Microbiol. 2022 Apr 25;13:840893. doi: 10.3389/fmicb.2022.840893. eCollection 2022.

PMID: 35547120

10

Zucchini yellow mosaic virus Genomic Sequences from Papua New Guinea: Lack of Genetic Connectivity with Northern Australian or East Timorese Genomes, and New Recombination Findings.

Maina S, et al.  Plant Dis. 2019 Jun;103(6):1326-1336. doi: 10.1094/PDIS-09-18-1666-RE. Epub 2019 Apr 16.

PMID: 30995424