Pumpkin yellow mosaic virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000874505.1
Isolate Malaysia: Negeri Sembilan
Release date 2015/2/13
Submitter Tsai,W.S., Shih,S.L., Roff,M.M.N., Green,S.K.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_010946
ACCGGATGGCCGCGCTTTTTTTATGTGGGCCCTCGACCAATGAAATTCACGCTACATGGCTTATTTATTACATGGGGACCATTAAATAGACTTCCTCACCAAGTTTTGATCCACACCATGTGGGATCCACTTCTGCACGAATTTCCTGAAAGTGTTCATGGTCTAAGGTGCATGCTAGCGGTGAAATATCTTCAGGAAGTGGAAAAAACATATTCTCCGGACACAGTCGGCTACGATCTTGTCCGCGATCTTATTCTTGTTCTCCGCGCAAAGAACTATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAGAAGTCCCGACGTGCCAAGGGGCTGTGAAGGCCCTTGTAAAGTTCAATCCTTTGAATCTAGGCACGATGTCTCTCATATTGGGAAGGTATTGTGTATCAGTGATGTTACACGAGGAACCGGACTCACACATCGCGTTGGGAAGCGATTCTGTGTGAAATCTGTTTTTGTTTTGGGAAAGATATGGGTGGATGAAAATATCAAGACTAAAAATCACACTAATAGCGTTATATTGTTTTTGGTTCGAGACCGTCGTCCTACAAGAACTCCACAAGATTTTGGGGAGGTTTTTAATATGTTCGACAATGAACCGAGCACTGCAACGGTGAAGAACATGCATCGTGATCGATACCAAGTGATACGCAAATGGCATGCCACTGTGACGGGAGGAACATACGCATCAAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGAGTCAATAATTATGTTGTCTACAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCGAACCCTGTATACGCGACTTTGAAAATTCGGATCTATTTTTATGATTCGGTAACAAATTAATATATATTCAATTTCACATTATATGTTGTCCATACATCAATTGTCTTTTCCAATACATCGTCTAAAACGTGATAAACTGCTCTTAATACATTGTAAATACTAATCACCCCTAACATATCCAAGTACTTAAGGACTTGGGTCTTAAAGACTCTCAAGAAAATCCCAGTCGGAGGGCGTAAGCCCGTCCAGATCTGGAACATTAGAACACATTTGTGAAGTCCCAGTGCTTTCCGCAGTTTGTGGTTGAACATTACATGCATTTTGATTATGTCGTGTTCCGTGAGACAAGGTCTGATGTCGTGTTTCAATATTTTGAAATAGAGGGGATTTGGAACTTCCCAGATATATACGCCACTCTCTGCTCGATCCACAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGGCAATTTATTGACATGTAATACGAGCATCCGCACGGTAGATCAATTCGTCTGCGCCTGATATTCTTCTTCTTGTTGTGCGGTAGCGATTTTTTCGCGACCGGAATAGAGTGGTTCTTTGATTGTGAGGAAGATTGCATTCTTTAATGCCCACTGCTTCAGTGCTGAATTCTTATCCTCTTCCAAGTACTCTTTATATGATGACGTTGGTCCTGGATTGCATAGGAAGATTGTCGGGATACCACCTTTAATTTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGCTTTAAATAGTGGGGGTCGACGTCATCAATGACGTTGTACCATGCATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGGCCCAATGAACGAGCCCACATTGTCCTTCCTGTACGACTCTCACCCTCTATGACAATACTTATGGGTCTATTTGGCCGCGCAGCGGAACACCCCACGTTCTCAGAAACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGAAAAATATAATCTTTTGGGAGTTTCTCCCTTATTATACTTAGTGCTGCTTCTTTGGAACCTGCGTTTAAGGCTTCTGCGCATGCGTCGTTAGAATTCTGGCACCCTCCTCTAGCACTTCGACCGTCGATCTGGAATTCTCCCCAGTCGAGGGTGTCTCCGTCCTTGTCCAGGTAGGATTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTAGACTTGGTTGGGGATACCAAGTCGAAGAATCTGTTATTCGTGCAGTTGCATTTGCCTTCGAATTGAATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGCAGCTCTCTACAGATTTTGATATATTTTTTATTTGTTGGGGTTTGTAGAGGTTTTAATTGGGAAAGTGCTTCTTCCTTGGTGAGGGAGCACTGTGGATAAGTGAGAAAATAATTTTTGGCTTTAATAGAAAAACGTCCGGCTCTAGGCATTTTGGAATTGGGGGGCACTCTAAGTCTCTGCAATCGGGGGAACTGGGGGGCAATTTATATGTGCCCCCCAAATGGCAAAATAGTAATTATGTAAATAATTACTTTAATTCAAAATGAATAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_001974387.1
Location 40-456
Protein Name precoat protein
Coding Region ATGAAATTCACGCTACATGGCTTATTTATTACATGGGGACCATTAAATAGACTTCCTCACCAAGTTTTGATCCACACCATGTGGGATCCACTTCTGCACGAATTTCCTGAAAGTGTTCATGGTCTAAGGTGCATGCTAGCGGTGAAATATCTTCAGGAAGTGGAAAAAACATATTCTCCGGACACAGTCGGCTACGATCTTGTCCGCGATCTTATTCTTGTTCTCCGCGCAAAGAACTATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAG
Protein Sequence MKFTLHGLFITWGPLNRLPHQVLIHTMWDPLLHEFPESVHGLRCMLAVKYLQEVEKTYSPDTVGYDLVRDLILVLRAKNYVEATSRYYHFNSRVEGTPTSQLRQPLCFPCSCPHCPRHKGKGLDKQADEQKTQDVQNV

NCBI Accession YP_001974388.1
Location 278-1048
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAGAAGTCCCGACGTGCCAAGGGGCTGTGAAGGCCCTTGTAAAGTTCAATCCTTTGAATCTAGGCACGATGTCTCTCATATTGGGAAGGTATTGTGTATCAGTGATGTTACACGAGGAACCGGACTCACACATCGCGTTGGGAAGCGATTCTGTGTGAAATCTGTTTTTGTTTTGGGAAAGATATGGGTGGATGAAAATATCAAGACTAAAAATCACACTAATAGCGTTATATTGTTTTTGGTTCGAGACCGTCGTCCTACAAGAACTCCACAAGATTTTGGGGAGGTTTTTAATATGTTCGACAATGAACCGAGCACTGCAACGGTGAAGAACATGCATCGTGATCGATACCAAGTGATACGCAAATGGCATGCCACTGTGACGGGAGGAACATACGCATCAAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGAGTCAATAATTATGTTGTCTACAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCGAACCCTGTATACGCGACTTTGAAAATTCGGATCTATTTTTATGATTCGGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYVSRAVVPIARVTKGKAWTNRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVLCISDVTRGTGLTHRVGKRFCVKSVFVLGKIWVDENIKTKNHTNSVILFLVRDRRPTRTPQDFGEVFNMFDNEPSTATVKNMHRDRYQVIRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_001974389.1
Location 1045-1455
Protein Name C3 protein
Coding Region ATGATCACGGATTCACGCACAGGGGAGTACATCACTGTGGATCGAGCAGAGAGTGGCGTATATATCTGGGAAGTTCCAAATCCCCTCTATTTCAAAATATTGAAACACGACATCAGACCTTGTCTCACGGAACACGACATAATCAAAATGCATGTAATGTTCAACCACAAACTGCGGAAAGCACTGGGACTTCACAAATGTGTTCTAATGTTCCAGATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGAGTCTTTAAGACCCAAGTCCTTAAGTACTTGGATATGTTAGGGGTGATTAGTATTTACAATGTATTAAGAGCAGTTTATCACGTTTTAGACGATGTATTGGAAAAGACAATTGATGTATGGACAACATATAATGTGAAATTGAATATATATTAA
Protein Sequence MITDSRTGEYITVDRAESGVYIWEVPNPLYFKILKHDIRPCLTEHDIIKMHVMFNHKLRKALGLHKCVLMFQIWTGLRPPTGIFLRVFKTQVLKYLDMLGVISIYNVLRAVYHVLDDVLEKTIDVWTTYNVKLNIY

NCBI Accession YP_001974390.1
Location 1190-1594
Protein Name C2 protein
Coding Region ATGCAATCTTCCTCACAATCAAAGAACCACTCTATTCCGGTCGCGAAAAAATCGCTACCGCACAACAAGAAGAAGAATATCAGGCGCAGACGAATTGATCTACCGTGCGGATGCTCGTATTACATGTCAATAAATTGCCATGATCACGGATTCACGCACAGGGGAGTACATCACTGTGGATCGAGCAGAGAGTGGCGTATATATCTGGGAAGTTCCAAATCCCCTCTATTTCAAAATATTGAAACACGACATCAGACCTTGTCTCACGGAACACGACATAATCAAAATGCATGTAATGTTCAACCACAAACTGCGGAAAGCACTGGGACTTCACAAATGTGTTCTAATGTTCCAGATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGAGTCTTTAA
Protein Sequence MQSSSQSKNHSIPVAKKSLPHNKKKNIRRRRIDLPCGCSYYMSINCHDHGFTHRGVHHCGSSREWRIYLGSSKSPLFQNIETRHQTLSHGTRHNQNACNVQPQTAESTGTSQMCSNVPDLDGLTPSDWDFLESL

NCBI Accession YP_001974391.1
Location 1497-2582
Protein Name replication-associated protein C1
Coding Region ATGCCTAGAGCCGGACGTTTTTCTATTAAAGCCAAAAATTATTTTCTCACTTATCCACAGTGCTCCCTCACCAAGGAAGAAGCACTTTCCCAATTAAAACCTCTACAAACCCCAACAAATAAAAAATATATCAAAATCTGTAGAGAGCTGCACGAAGATGGGAGCCCTCATCTCCATGTGCTCATTCAATTCGAAGGCAAATGCAACTGCACGAATAACAGATTCTTCGACTTGGTATCCCCAACCAAGTCTACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAATCCTACCTGGACAAGGACGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGTCGAAGTGCTAGAGGAGGGTGCCAGAATTCTAACGACGCATGCGCAGAAGCCTTAAACGCAGGTTCCAAAGAAGCAGCACTAAGTATAATAAGGGAGAAACTCCCAAAAGATTATATTTTTCAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCATTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGTTTCTGAGAACGTGGGGTGTTCCGCTGCGCGGCCAAATAGACCCATAAGTATTGTCATAGAGGGTGAGAGTCGTACAGGAAGGACAATGTGGGCTCGTTCATTGGGCCCACATAATTATCTGTGCGGTCATCTAGATCTGAGTCCAAAGGTGTACAGCAACGATGCATGGTACAACGTCATTGATGACGTCGACCCCCACTATTTAAAGCATTTCAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGAAAGCCAATTCAAATTAAAGGTGGTATCCCGACAATCTTCCTATGCAATCCAGGACCAACGTCATCATATAAAGAGTACTTGGAAGAGGATAAGAATTCAGCACTGAAGCAGTGGGCATTAAAGAATGCAATCTTCCTCACAATCAAAGAACCACTCTATTCCGGTCGCGAAAAAATCGCTACCGCACAACAAGAAGAAGAATATCAGGCGCAGACGAATTGA
Protein Sequence MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQLKPLQTPTNKKYIKICRELHEDGSPHLHVLIQFEGKCNCTNNRFFDLVSPTKSTHFHPNIQGAKSSSDVKSYLDKDGDTLDWGEFQIDGRSARGGCQNSNDACAEALNAGSKEAALSIIREKLPKDYIFQFHNLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVGCSAARPNRPISIVIEGESRTGRTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLEEDKNSALKQWALKNAIFLTIKEPLYSGREKIATAQQEEEYQAQTN

NCBI Accession YP_001974392.1
Location 2168-2425
Protein Name C4 protein
Coding Region ATGGGAGCCCTCATCTCCATGTGCTCATTCAATTCGAAGGCAAATGCAACTGCACGAATAACAGATTCTTCGACTTGGTATCCCCAACCAAGTCTACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAATCCTACCTGGACAAGGACGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGTCGAAGTGCTAGAGGAGGGTGCCAGAATTCTAACGACGCATGCGCAGAAGCCTTAA
Protein Sequence MGALISMCSFNSKANATARITDSSTWYPQPSLHISIRTFRELNPAPTSNPTWTRTETPSTGENSRSTVEVLEEGARILTTHAQKP

References More References in PubMed

1

Three-dimensional quantitative imaging of Tobacco mosaic virus and Zucchini yellow mosaic virus induced ultrastructural changes.

Zechmann B, et al.  Protoplasma. 2021 Nov;258(6):1201-1211. doi: 10.1007/s00709-021-01626-0. Epub 2021 Feb 22.

PMID: 33619654
2

Complete Genome Sequence of a Zucchini Yellow Mosaic Virus Isolated from Pumpkin in Oklahoma.

Khanal V, et al.  Microbiol Resour Announc. 2019 Jan 10;8(2):e01583-18. doi: 10.1128/MRA.01583-18. eCollection 2019 Jan.

PMID: 30643904
3

Epidemiology of Zucchini yellow mosaic virus in cucurbit crops in a remote tropical environment.

Clarke R, et al.  Virus Res. 2020 May;281:197897. doi: 10.1016/j.virusres.2020.197897. Epub 2020 Feb 19.

PMID: 32087188
4

Fusion coat protein of pumpkin yellow vein mosaic virus with maltose binding protein: Applications in immunodiagnosis of begomoviruses.

Phaneendra C, et al.  Virusdisease. 2014;25(3):390-3. doi: 10.1007/s13337-013-0189-1. Epub 2014 Feb 1.

PMID: 25674610
5

Zucchini yellow mosaic virus (ZYMV, Potyvirus): vertical transmission, seed infection and cryptic infections.

Simmons HE, et al.  Virus Res. 2013 Sep;176(1-2):259-64. doi: 10.1016/j.virusres.2013.06.016. Epub 2013 Jul 8.

PMID: 23845301
6

Protective and Curative Activities of Paenibacillus polymyxa against Zucchini yellow mosaic virus Infestation in Squash Plants.

Abdelkhalek A, et al.  Biology (Basel). 2022 Jul 30;11(8):1150. doi: 10.3390/biology11081150.

PMID: 36009777
7

First Report of Squash Mosaic Virus in Ornamental Pumpkin in the Czech Republic.

Svoboda J, et al.  Plant Dis. 2011 Oct;95(10):1321. doi: 10.1094/PDIS-05-11-0444.

PMID: 30731671
8

In vivo Antiphytoviral Activity of Essential Oils and Hydrosols From Origanum vulgare, Thymus vulgaris, and Rosmarinus officinalis to Control Zucchini Yellow Mosaic Virus and Tomato Leaf Curl New Delhi Virus in Cucurbita pepo L.

Taglienti A, et al.  Front Microbiol. 2022 Apr 25;13:840893. doi: 10.3389/fmicb.2022.840893. eCollection 2022.

PMID: 35547120
9

Zucchini yellow mosaic virus Populations from East Timorese and Northern Australian Cucurbit Crops: Molecular Properties, Genetic Connectivity, and Biosecurity Implications.

Maina S, et al.  Plant Dis. 2017 Jul;101(7):1236-1245. doi: 10.1094/PDIS-11-16-1672-RE. Epub 2017 May 3.

PMID: 30682959
10

First Report of Zucchini yellow mosaic virus in Bottlegourd (Lagenaria siceraria) in India.

Verma R, et al.  Plant Dis. 2004 Apr;88(4):426. doi: 10.1094/PDIS.2004.88.4.426C.

PMID: 30812634