Pumpkin yellow mosaic virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000874505.1
Isolate Malaysia: Negeri Sembilan
Release date 2015/2/13
Submitter Tsai,W.S., Shih,S.L., Roff,M.M.N., Green,S.K.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_010946
ACCGGATGGCCGCGCTTTTTTTATGTGGGCCCTCGACCAATGAAATTCACGCTACATGGCTTATTTATTACATGGGGACCATTAAATAGACTTCCTCACCAAGTTTTGATCCACACCATGTGGGATCCACTTCTGCACGAATTTCCTGAAAGTGTTCATGGTCTAAGGTGCATGCTAGCGGTGAAATATCTTCAGGAAGTGGAAAAAACATATTCTCCGGACACAGTCGGCTACGATCTTGTCCGCGATCTTATTCTTGTTCTCCGCGCAAAGAACTATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAGAAGTCCCGACGTGCCAAGGGGCTGTGAAGGCCCTTGTAAAGTTCAATCCTTTGAATCTAGGCACGATGTCTCTCATATTGGGAAGGTATTGTGTATCAGTGATGTTACACGAGGAACCGGACTCACACATCGCGTTGGGAAGCGATTCTGTGTGAAATCTGTTTTTGTTTTGGGAAAGATATGGGTGGATGAAAATATCAAGACTAAAAATCACACTAATAGCGTTATATTGTTTTTGGTTCGAGACCGTCGTCCTACAAGAACTCCACAAGATTTTGGGGAGGTTTTTAATATGTTCGACAATGAACCGAGCACTGCAACGGTGAAGAACATGCATCGTGATCGATACCAAGTGATACGCAAATGGCATGCCACTGTGACGGGAGGAACATACGCATCAAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGAGTCAATAATTATGTTGTCTACAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCGAACCCTGTATACGCGACTTTGAAAATTCGGATCTATTTTTATGATTCGGTAACAAATTAATATATATTCAATTTCACATTATATGTTGTCCATACATCAATTGTCTTTTCCAATACATCGTCTAAAACGTGATAAACTGCTCTTAATACATTGTAAATACTAATCACCCCTAACATATCCAAGTACTTAAGGACTTGGGTCTTAAAGACTCTCAAGAAAATCCCAGTCGGAGGGCGTAAGCCCGTCCAGATCTGGAACATTAGAACACATTTGTGAAGTCCCAGTGCTTTCCGCAGTTTGTGGTTGAACATTACATGCATTTTGATTATGTCGTGTTCCGTGAGACAAGGTCTGATGTCGTGTTTCAATATTTTGAAATAGAGGGGATTTGGAACTTCCCAGATATATACGCCACTCTCTGCTCGATCCACAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGGCAATTTATTGACATGTAATACGAGCATCCGCACGGTAGATCAATTCGTCTGCGCCTGATATTCTTCTTCTTGTTGTGCGGTAGCGATTTTTTCGCGACCGGAATAGAGTGGTTCTTTGATTGTGAGGAAGATTGCATTCTTTAATGCCCACTGCTTCAGTGCTGAATTCTTATCCTCTTCCAAGTACTCTTTATATGATGACGTTGGTCCTGGATTGCATAGGAAGATTGTCGGGATACCACCTTTAATTTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGCTTTAAATAGTGGGGGTCGACGTCATCAATGACGTTGTACCATGCATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGGCCCAATGAACGAGCCCACATTGTCCTTCCTGTACGACTCTCACCCTCTATGACAATACTTATGGGTCTATTTGGCCGCGCAGCGGAACACCCCACGTTCTCAGAAACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGAAAAATATAATCTTTTGGGAGTTTCTCCCTTATTATACTTAGTGCTGCTTCTTTGGAACCTGCGTTTAAGGCTTCTGCGCATGCGTCGTTAGAATTCTGGCACCCTCCTCTAGCACTTCGACCGTCGATCTGGAATTCTCCCCAGTCGAGGGTGTCTCCGTCCTTGTCCAGGTAGGATTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTAGACTTGGTTGGGGATACCAAGTCGAAGAATCTGTTATTCGTGCAGTTGCATTTGCCTTCGAATTGAATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGCAGCTCTCTACAGATTTTGATATATTTTTTATTTGTTGGGGTTTGTAGAGGTTTTAATTGGGAAAGTGCTTCTTCCTTGGTGAGGGAGCACTGTGGATAAGTGAGAAAATAATTTTTGGCTTTAATAGAAAAACGTCCGGCTCTAGGCATTTTGGAATTGGGGGGCACTCTAAGTCTCTGCAATCGGGGGAACTGGGGGGCAATTTATATGTGCCCCCCAAATGGCAAAATAGTAATTATGTAAATAATTACTTTAATTCAAAATGAATAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_001974387.1
Location 40-456
Protein Name precoat protein
Coding Region ATGAAATTCACGCTACATGGCTTATTTATTACATGGGGACCATTAAATAGACTTCCTCACCAAGTTTTGATCCACACCATGTGGGATCCACTTCTGCACGAATTTCCTGAAAGTGTTCATGGTCTAAGGTGCATGCTAGCGGTGAAATATCTTCAGGAAGTGGAAAAAACATATTCTCCGGACACAGTCGGCTACGATCTTGTCCGCGATCTTATTCTTGTTCTCCGCGCAAAGAACTATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAG
Protein Sequence MKFTLHGLFITWGPLNRLPHQVLIHTMWDPLLHEFPESVHGLRCMLAVKYLQEVEKTYSPDTVGYDLVRDLILVLRAKNYVEATSRYYHFNSRVEGTPTSQLRQPLCFPCSCPHCPRHKGKGLDKQADEQKTQDVQNV

NCBI Accession YP_001974388.1
Location 278-1048
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAGAAGTCCCGACGTGCCAAGGGGCTGTGAAGGCCCTTGTAAAGTTCAATCCTTTGAATCTAGGCACGATGTCTCTCATATTGGGAAGGTATTGTGTATCAGTGATGTTACACGAGGAACCGGACTCACACATCGCGTTGGGAAGCGATTCTGTGTGAAATCTGTTTTTGTTTTGGGAAAGATATGGGTGGATGAAAATATCAAGACTAAAAATCACACTAATAGCGTTATATTGTTTTTGGTTCGAGACCGTCGTCCTACAAGAACTCCACAAGATTTTGGGGAGGTTTTTAATATGTTCGACAATGAACCGAGCACTGCAACGGTGAAGAACATGCATCGTGATCGATACCAAGTGATACGCAAATGGCATGCCACTGTGACGGGAGGAACATACGCATCAAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGAGTCAATAATTATGTTGTCTACAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCGAACCCTGTATACGCGACTTTGAAAATTCGGATCTATTTTTATGATTCGGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYVSRAVVPIARVTKGKAWTNRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVLCISDVTRGTGLTHRVGKRFCVKSVFVLGKIWVDENIKTKNHTNSVILFLVRDRRPTRTPQDFGEVFNMFDNEPSTATVKNMHRDRYQVIRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_001974389.1
Location 1045-1455
Protein Name C3 protein
Coding Region ATGATCACGGATTCACGCACAGGGGAGTACATCACTGTGGATCGAGCAGAGAGTGGCGTATATATCTGGGAAGTTCCAAATCCCCTCTATTTCAAAATATTGAAACACGACATCAGACCTTGTCTCACGGAACACGACATAATCAAAATGCATGTAATGTTCAACCACAAACTGCGGAAAGCACTGGGACTTCACAAATGTGTTCTAATGTTCCAGATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGAGTCTTTAAGACCCAAGTCCTTAAGTACTTGGATATGTTAGGGGTGATTAGTATTTACAATGTATTAAGAGCAGTTTATCACGTTTTAGACGATGTATTGGAAAAGACAATTGATGTATGGACAACATATAATGTGAAATTGAATATATATTAA
Protein Sequence MITDSRTGEYITVDRAESGVYIWEVPNPLYFKILKHDIRPCLTEHDIIKMHVMFNHKLRKALGLHKCVLMFQIWTGLRPPTGIFLRVFKTQVLKYLDMLGVISIYNVLRAVYHVLDDVLEKTIDVWTTYNVKLNIY

NCBI Accession YP_001974390.1
Location 1190-1594
Protein Name C2 protein
Coding Region ATGCAATCTTCCTCACAATCAAAGAACCACTCTATTCCGGTCGCGAAAAAATCGCTACCGCACAACAAGAAGAAGAATATCAGGCGCAGACGAATTGATCTACCGTGCGGATGCTCGTATTACATGTCAATAAATTGCCATGATCACGGATTCACGCACAGGGGAGTACATCACTGTGGATCGAGCAGAGAGTGGCGTATATATCTGGGAAGTTCCAAATCCCCTCTATTTCAAAATATTGAAACACGACATCAGACCTTGTCTCACGGAACACGACATAATCAAAATGCATGTAATGTTCAACCACAAACTGCGGAAAGCACTGGGACTTCACAAATGTGTTCTAATGTTCCAGATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGAGTCTTTAA
Protein Sequence MQSSSQSKNHSIPVAKKSLPHNKKKNIRRRRIDLPCGCSYYMSINCHDHGFTHRGVHHCGSSREWRIYLGSSKSPLFQNIETRHQTLSHGTRHNQNACNVQPQTAESTGTSQMCSNVPDLDGLTPSDWDFLESL

NCBI Accession YP_001974391.1
Location 1497-2582
Protein Name replication-associated protein C1
Coding Region ATGCCTAGAGCCGGACGTTTTTCTATTAAAGCCAAAAATTATTTTCTCACTTATCCACAGTGCTCCCTCACCAAGGAAGAAGCACTTTCCCAATTAAAACCTCTACAAACCCCAACAAATAAAAAATATATCAAAATCTGTAGAGAGCTGCACGAAGATGGGAGCCCTCATCTCCATGTGCTCATTCAATTCGAAGGCAAATGCAACTGCACGAATAACAGATTCTTCGACTTGGTATCCCCAACCAAGTCTACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAATCCTACCTGGACAAGGACGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGTCGAAGTGCTAGAGGAGGGTGCCAGAATTCTAACGACGCATGCGCAGAAGCCTTAAACGCAGGTTCCAAAGAAGCAGCACTAAGTATAATAAGGGAGAAACTCCCAAAAGATTATATTTTTCAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCATTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGTTTCTGAGAACGTGGGGTGTTCCGCTGCGCGGCCAAATAGACCCATAAGTATTGTCATAGAGGGTGAGAGTCGTACAGGAAGGACAATGTGGGCTCGTTCATTGGGCCCACATAATTATCTGTGCGGTCATCTAGATCTGAGTCCAAAGGTGTACAGCAACGATGCATGGTACAACGTCATTGATGACGTCGACCCCCACTATTTAAAGCATTTCAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGAAAGCCAATTCAAATTAAAGGTGGTATCCCGACAATCTTCCTATGCAATCCAGGACCAACGTCATCATATAAAGAGTACTTGGAAGAGGATAAGAATTCAGCACTGAAGCAGTGGGCATTAAAGAATGCAATCTTCCTCACAATCAAAGAACCACTCTATTCCGGTCGCGAAAAAATCGCTACCGCACAACAAGAAGAAGAATATCAGGCGCAGACGAATTGA
Protein Sequence MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQLKPLQTPTNKKYIKICRELHEDGSPHLHVLIQFEGKCNCTNNRFFDLVSPTKSTHFHPNIQGAKSSSDVKSYLDKDGDTLDWGEFQIDGRSARGGCQNSNDACAEALNAGSKEAALSIIREKLPKDYIFQFHNLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVGCSAARPNRPISIVIEGESRTGRTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLEEDKNSALKQWALKNAIFLTIKEPLYSGREKIATAQQEEEYQAQTN

NCBI Accession YP_001974392.1
Location 2168-2425
Protein Name C4 protein
Coding Region ATGGGAGCCCTCATCTCCATGTGCTCATTCAATTCGAAGGCAAATGCAACTGCACGAATAACAGATTCTTCGACTTGGTATCCCCAACCAAGTCTACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAATCCTACCTGGACAAGGACGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGTCGAAGTGCTAGAGGAGGGTGCCAGAATTCTAACGACGCATGCGCAGAAGCCTTAA
Protein Sequence MGALISMCSFNSKANATARITDSSTWYPQPSLHISIRTFRELNPAPTSNPTWTRTETPSTGENSRSTVEVLEEGARILTTHAQKP

References More References in PubMed

1

Three-dimensional quantitative imaging of Tobacco mosaic virus and Zucchini yellow mosaic virus induced ultrastructural changes.

Zechmann B, et al.  Protoplasma. 2021 Nov;258(6):1201-1211. doi: 10.1007/s00709-021-01626-0. Epub 2021 Feb 22.

PMID: 33619654
2

Epidemiology of Zucchini yellow mosaic virus in cucurbit crops in a remote tropical environment.

Clarke R, et al.  Virus Res. 2020 May;281:197897. doi: 10.1016/j.virusres.2020.197897. Epub 2020 Feb 19.

PMID: 32087188
3

Complete Genome Sequence of a Zucchini Yellow Mosaic Virus Isolated from Pumpkin in Oklahoma.

Khanal V, et al.  Microbiol Resour Announc. 2019 Jan 10;8(2):e01583-18. doi: 10.1128/MRA.01583-18. eCollection 2019 Jan.

PMID: 30643904
4

Fusion coat protein of pumpkin yellow vein mosaic virus with maltose binding protein: Applications in immunodiagnosis of begomoviruses.

Phaneendra C, et al.  Virusdisease. 2014;25(3):390-3. doi: 10.1007/s13337-013-0189-1. Epub 2014 Feb 1.

PMID: 25674610
5

Protective and Curative Activities of Paenibacillus polymyxa against Zucchini yellow mosaic virus Infestation in Squash Plants.

Abdelkhalek A, et al.  Biology (Basel). 2022 Jul 30;11(8):1150. doi: 10.3390/biology11081150.

PMID: 36009777
6

First Report of Squash Mosaic Virus in Ornamental Pumpkin in the Czech Republic.

Svoboda J, et al.  Plant Dis. 2011 Oct;95(10):1321. doi: 10.1094/PDIS-05-11-0444.

PMID: 30731671
7

Investigates the ability of plant extracts from Lens culinaris to protect zucchini from the Zucchini yellow mosaic virus (ZYMV).

Ali R, et al.  Sci Rep. 2024 May 28;14(1):12257. doi: 10.1038/s41598-024-62128-6.

PMID: 38806538
8

Zucchini yellow mosaic virus (ZYMV, Potyvirus): vertical transmission, seed infection and cryptic infections.

Simmons HE, et al.  Virus Res. 2013 Sep;176(1-2):259-64. doi: 10.1016/j.virusres.2013.06.016. Epub 2013 Jul 8.

PMID: 23845301
9

First Report of Zucchini yellow mosaic virus in Cucurbits in Ivory Coast.

Koné D, et al.  Plant Dis. 2010 Nov;94(11):1378. doi: 10.1094/PDIS-06-10-0416.

PMID: 30743639
10

Zucchini yellow mosaic virus Genomic Sequences from Papua New Guinea: Lack of Genetic Connectivity with Northern Australian or East Timorese Genomes, and New Recombination Findings.

Maina S, et al.  Plant Dis. 2019 Jun;103(6):1326-1336. doi: 10.1094/PDIS-09-18-1666-RE. Epub 2019 Apr 16.

PMID: 30995424