Premna leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002823225.1 |
| Isolate |
Viet Nam |
| Release date |
2018/8/25 |
| Submitter |
She,X., He,Z., Brown,J.K. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTTAAAGTGGGCCCCGTGATGTGATATGTCGGCCAATCAGTACGCTCCCTCAAAGCTTATTTAGTGCGTGGTCCCCTTTAAGTAGCTTAGCCCCCAAGTTTAATTTGAAAAATGTGGGATCCACTTGAGAACGAATTCCCAGATACGGTGCACGGTCTACGGTGTATGCTGGCCGTAAAATACTGTCAACTTATTGAAGATACATACGCTCCAGATACGTTGGGCTACGATCTTATACGTGACTTGATCCTTGTTATTCGAGCACGTAGCTATGTCGAAGCGACCCGCAGATATAGTCATTTCAACTCCCGCCTCGAAGGTACGTCGCAGGCTGAACTTCGAGTCCCCAGGAATGAGCCGTGCCACTGTCCCCACTGTCCTCGTCACAAACAGAAGGAGGATGTGGGCCAACAGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCAAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAGCGACATGATGTGGCCCATACAGGCAAGGTCATTTGTATTTCGGATGTCACTCGTGGTAATGGGCTGACCCATCGTGTAGGGAAGAGGTTTTGCATTAAGTCCGTTTATGTGTTGGGTAAAATCTGGATGGATGAAAACATCAAGGTTAAAAACCACACCAACACTTGTATGTTCTTTGTTGTTAGGGATAGAAGGCCATATGGCACTCCTATGGATTTTGGTCAGGTGTTCAACATGTATGACAATGAGCCCAGTACAGCCACTGTGAAGAACGATCTCAGGGATCGTTTTCAAGTTCTACGCCGTTTTGCAGGAACTGTGACAGGTGGTCAGTATGCTTCCAAGGAGCAGGCTTTGGTTAGGAAGTTCATGAGGGTCAACAATCATGTGGTGTATAACCATCAAGAAACTGCAAAGTATGAGAACCATACTGAGAATGCGTTGTTGTTGTATATGGCATGTACACATGCAAGTAATCCATTGTATGCAACCATGAAGATCAGGATCTATTTTTATGATTCTGTTCAAAATTAATAAACGTTAAATTTTATTATATTTGCTAATTGAGCATCAATTGTGCCCTCAAGTACATCGTATAACACATGAGAAAAAGCCCTAATTACATTGTTAATACTAATCACTCCTAATCTATCTAAATACTTCATACATTGATACTTAAAAACCCTTAAGAAATGCCAGGTCTGAGGATGTAAACGAGTCCAGATCTGGCAGGTCAGAAAACACTGGTGTATCCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGGACCTGGACTGTTATGATGTCTCTGTTTGTCATGAATGTGTTGTGTATGTGGTTGGTTATCTTGAAATAGAGGGGATTTCTGAGCGTCCAGGTATACACGCCACTCTTTGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGAGAATCCATGTGATGCGCAGTTTAGTCCAAGATAGTATGAGCAGCCGCACGGGAGATCAATTCTGCGTCTCCGTGGTGGTCTCTGCTTGGATATCTTGTGTTGGACCTTGATGGGTACCTGAGTACAATGGTTGCGTGAGGGTGATGAATTCTGCATTCTTGATGGACCAGTCTTTGAGTGCTGAATTCTTATCCTCGTCCAAGTACTCTTTATATGATGACGTGGGTCCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGGCTTAGATCTAGGTGGCCACATAAATAATTATGTGGGCCTAGTGATCTGGCCCACATGGTTTTCCCTGTACGACTATCACCCTCTATTACAATACTCTTGGGCCTCCATGGCCGCGCAGCGGCACCCATGACGTTTTCAGACACCCAGACTTCAAGTTCCTCTGGAACTTGATCAAATGAAGAAGACAAAAAAGGACTAACAAATACTTCTACAGGAGCTTGAAAAATCCTATCTAAATTGGCAGTTAAATTATGGAATTGTAAAACATAATCTTTAGGGGCTAATTCCCTAATTACATTAAGAGCCTCTGACTTACTGCCTGTGTTAAGCGCCTGGGCGTAAGCATCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCGCCCCAATCGAGGGTGTCGCCGTCCTTATCGATGTAGGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGTAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTGGATTTTGGCATTGGTATTTGCCCTCGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCATGTAATTCTCTGCAAATCTTAATGTATTTTTTGTTTGTTGGGGTATTTAGGTTTTGCAATTGGGAAAGTGCTTCCTCTTTGGTTAGTGAACACTGAGGGTATGTGAGAAAATAATTTTTGGCATTTATTTTAAATTTTTTAGGGGGAGCCATTGACTTGGTCAATCGGTGTCTCTCAAAGTTGTCCTGCAATTGGTGTATTGGGGTCTTATTTATATGAGACCCCAAATGGCATTCTCGTAATTCCCCAAAGAAATTCAAAATTCAAATTTGAAATCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009506448.1
|
|
Location
|
133-501 |
|
Gene Name
|
av2 |
|
Protein Name
|
AV2 |
|
Coding Region
|
ATGTGGGATCCACTTGAGAACGAATTCCCAGATACGGTGCACGGTCTACGGTGTATGCTGGCCGTAAAATACTGTCAACTTATTGAAGATACATACGCTCCAGATACGTTGGGCTACGATCTTATACGTGACTTGATCCTTGTTATTCGAGCACGTAGCTATGTCGAAGCGACCCGCAGATATAGTCATTTCAACTCCCGCCTCGAAGGTACGTCGCAGGCTGAACTTCGAGTCCCCAGGAATGAGCCGTGCCACTGTCCCCACTGTCCTCGTCACAAACAGAAGGAGGATGTGGGCCAACAGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCAAAGGGCTGTGA |
|
Protein Sequence
|
MWDPLENEFPDTVHGLRCMLAVKYCQLIEDTYAPDTLGYDLIRDLILVIRARSYVEATRRYSHFNSRLEGTSQAELRVPRNEPCHCPHCPRHKQKEDVGQQAHVPKAQDVQDVQKPRCSKGL |
|
NCBI Accession
|
YP_009506449.1
|
|
Location
|
178-627 |
|
Gene Name
|
ac5 |
|
Protein Name
|
AC5 |
|
Coding Region
|
ATGCAAAACCTCTTCCCTACACGATGGGTCAGCCCATTACCACGAGTGACATCCGAAATACAAATGACCTTGCCTGTATGGGCCACATCATGTCGCTGTTCAAATGACTGGACCTTACATGGGCCTTCACAGCCCTTTGGAACATCTGGGCTTCTGTACATCCTGTACATCCTGGGCTTTCGGTACATGGGCCTGTTGGCCCACATCCTCCTTCTGTTTGTGACGAGGACAGTGGGGACAGTGGCACGGCTCATTCCTGGGGACTCGAAGTTCAGCCTGCGACGTACCTTCGAGGCGGGAGTTGAAATGACTATATCTGCGGGTCGCTTCGACATAGCTACGTGCTCGAATAACAAGGATCAAGTCACGTATAAGATCGTAGCCCAACGTATCTGGAGCGTATGTATCTTCAATAAGTTGACAGTATTTTACGGCCAGCATACACCGTAG |
|
Protein Sequence
|
MQNLFPTRWVSPLPRVTSEIQMTLPVWATSCRCSNDWTLHGPSQPFGTSGLLYILYILGFRYMGLLAHILLLFVTRTVGTVARLIPGDSKFSLRRTFEAGVEMTISAGRFDIATCSNNKDQVTYKIVAQRIWSVCIFNKLTVFYGQHTP |
|
NCBI Accession
|
YP_009506450.1
|
|
Location
|
293-1066 |
|
Gene Name
|
av1 |
|
Protein Name
|
AV1 |
|
Coding Region
|
ATGTCGAAGCGACCCGCAGATATAGTCATTTCAACTCCCGCCTCGAAGGTACGTCGCAGGCTGAACTTCGAGTCCCCAGGAATGAGCCGTGCCACTGTCCCCACTGTCCTCGTCACAAACAGAAGGAGGATGTGGGCCAACAGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCAAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAGCGACATGATGTGGCCCATACAGGCAAGGTCATTTGTATTTCGGATGTCACTCGTGGTAATGGGCTGACCCATCGTGTAGGGAAGAGGTTTTGCATTAAGTCCGTTTATGTGTTGGGTAAAATCTGGATGGATGAAAACATCAAGGTTAAAAACCACACCAACACTTGTATGTTCTTTGTTGTTAGGGATAGAAGGCCATATGGCACTCCTATGGATTTTGGTCAGGTGTTCAACATGTATGACAATGAGCCCAGTACAGCCACTGTGAAGAACGATCTCAGGGATCGTTTTCAAGTTCTACGCCGTTTTGCAGGAACTGTGACAGGTGGTCAGTATGCTTCCAAGGAGCAGGCTTTGGTTAGGAAGTTCATGAGGGTCAACAATCATGTGGTGTATAACCATCAAGAAACTGCAAAGTATGAGAACCATACTGAGAATGCGTTGTTGTTGTATATGGCATGTACACATGCAAGTAATCCATTGTATGCAACCATGAAGATCAGGATCTATTTTTATGATTCTGTTCAAAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFESPGMSRATVPTVLVTNRRRMWANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEQRHDVAHTGKVICISDVTRGNGLTHRVGKRFCIKSVYVLGKIWMDENIKVKNHTNTCMFFVVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRFQVLRRFAGTVTGGQYASKEQALVRKFMRVNNHVVYNHQETAKYENHTENALLLYMACTHASNPLYATMKIRIYFYDSVQN |
|
NCBI Accession
|
YP_009506451.1
|
|
Location
|
1063-1467 |
|
Gene Name
|
ac3 |
|
Protein Name
|
AC3 |
|
Coding Region
|
ATGGATTCTCGCACAGGGGAGTACATCACTGCAGCTCAAGCAAAGAGTGGCGTGTATACCTGGACGCTCAGAAATCCCCTCTATTTCAAGATAACCAACCACATACACAACACATTCATGACAAACAGAGACATCATAACAGTCCAGGTCCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTGACCTGCCAGATCTGGACTCGTTTACATCCTCAGACCTGGCATTTCTTAAGGGTTTTTAAGTATCAATGTATGAAGTATTTAGATAGATTAGGAGTGATTAGTATTAACAATGTAATTAGGGCTTTTTCTCATGTGTTATACGATGTACTTGAGGGCACAATTGATGCTCAATTAGCAAATATAATAAAATTTAACGTTTATTAA |
|
Protein Sequence
|
MDSRTGEYITAAQAKSGVYTWTLRNPLYFKITNHIHNTFMTNRDIITVQVQFNHNLRKALGIHQCFLTCQIWTRLHPQTWHFLRVFKYQCMKYLDRLGVISINNVIRAFSHVLYDVLEGTIDAQLANIIKFNVY |
|
NCBI Accession
|
YP_009506452.1
|
|
Location
|
1208-1615 |
|
Gene Name
|
ac2 |
|
Protein Name
|
AC2 |
|
Coding Region
|
ATGCAGAATTCATCACCCTCACGCAACCATTGTACTCAGGTACCCATCAAGGTCCAACACAAGATATCCAAGCAGAGACCACCACGGAGACGCAGAATTGATCTCCCGTGCGGCTGCTCATACTATCTTGGACTAAACTGCGCATCACATGGATTCTCGCACAGGGGAGTACATCACTGCAGCTCAAGCAAAGAGTGGCGTGTATACCTGGACGCTCAGAAATCCCCTCTATTTCAAGATAACCAACCACATACACAACACATTCATGACAAACAGAGACATCATAACAGTCCAGGTCCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTGACCTGCCAGATCTGGACTCGTTTACATCCTCAGACCTGGCATTTCTTAAGGGTTTTTAA |
|
Protein Sequence
|
MQNSSPSRNHCTQVPIKVQHKISKQRPPRRRRIDLPCGCSYYLGLNCASHGFSHRGVHHCSSSKEWRVYLDAQKSPLFQDNQPHTQHIHDKQRHHNSPGPVQPQPEESVGDTPVFSDLPDLDSFTSSDLAFLKGF |
|
NCBI Accession
|
YP_009506453.1
|
|
Location
|
1515-2603 |
|
Gene Name
|
ac1 |
|
Protein Name
|
AC1 |
|
Coding Region
|
ATGGCTCCCCCTAAAAAATTTAAAATAAATGCCAAAAATTATTTTCTCACATACCCTCAGTGTTCACTAACCAAAGAGGAAGCACTTTCCCAATTGCAAAACCTAAATACCCCAACAAACAAAAAATACATTAAGATTTGCAGAGAATTACATGAAGATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATACCAATGCCAAAATCCACGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTACCATCCAAACATTCAGGGAGCTAAATCAAGCTCGGACGTCAAGTCCTACATCGATAAGGACGGCGACACCCTCGATTGGGGCGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGATGCTTACGCCCAGGCGCTTAACACAGGCAGTAAGTCAGAGGCTCTTAATGTAATTAGGGAATTAGCCCCTAAAGATTATGTTTTACAATTCCATAATTTAACTGCCAATTTAGATAGGATTTTTCAAGCTCCTGTAGAAGTATTTGTTAGTCCTTTTTTGTCTTCTTCATTTGATCAAGTTCCAGAGGAACTTGAAGTCTGGGTGTCTGAAAACGTCATGGGTGCCGCTGCGCGGCCATGGAGGCCCAAGAGTATTGTAATAGAGGGTGATAGTCGTACAGGGAAAACCATGTGGGCCAGATCACTAGGCCCACATAATTATTTATGTGGCCACCTAGATCTAAGCCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGTGGTATCCCAACAATCTTCCTCTGCAATCCAGGACCCACGTCATCATATAAAGAGTACTTGGACGAGGATAAGAATTCAGCACTCAAAGACTGGTCCATCAAGAATGCAGAATTCATCACCCTCACGCAACCATTGTACTCAGGTACCCATCAAGGTCCAACACAAGATATCCAAGCAGAGACCACCACGGAGACGCAGAATTGA |
|
Protein Sequence
|
MAPPKKFKINAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYQCQNPRFFDLVSPTRSAHYHPNIQGAKSSSDVKSYIDKDGDTLDWGEFQIDGRSARGGQQSANDAYAQALNTGSKSEALNVIRELAPKDYVLQFHNLTANLDRIFQAPVEVFVSPFLSSSFDQVPEELEVWVSENVMGAAARPWRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKDWSIKNAEFITLTQPLYSGTHQGPTQDIQAETTTETQN |
|
NCBI Accession
|
YP_009506454.1
|
|
Location
|
2156-2452 |
|
Gene Name
|
ac4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGAAGATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATACCAATGCCAAAATCCACGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTACCATCCAAACATTCAGGGAGCTAAATCAAGCTCGGACGTCAAGTCCTACATCGATAAGGACGGCGACACCCTCGATTGGGGCGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGATGCTTACGCCCAGGCGCTTAACACAGGCAGTAAGTCAGAGGCTCTTAATGTAA |
|
Protein Sequence
|
MKMGALISMCSSSSRANTNAKIHDSSTWYPQPGQHITIQTFRELNQARTSSPTSIRTATPSIGASFRSMDDLQEGDNNQPMMLTPRRLTQAVSQRLLM |