Premna leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002823225.1
Isolate Viet Nam
Release date 2018/8/25
Submitter She,X., He,Z., Brown,J.K.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038454
ACCGGATGGCCGCGATTTTTTTTTAAAGTGGGCCCCGTGATGTGATATGTCGGCCAATCAGTACGCTCCCTCAAAGCTTATTTAGTGCGTGGTCCCCTTTAAGTAGCTTAGCCCCCAAGTTTAATTTGAAAAATGTGGGATCCACTTGAGAACGAATTCCCAGATACGGTGCACGGTCTACGGTGTATGCTGGCCGTAAAATACTGTCAACTTATTGAAGATACATACGCTCCAGATACGTTGGGCTACGATCTTATACGTGACTTGATCCTTGTTATTCGAGCACGTAGCTATGTCGAAGCGACCCGCAGATATAGTCATTTCAACTCCCGCCTCGAAGGTACGTCGCAGGCTGAACTTCGAGTCCCCAGGAATGAGCCGTGCCACTGTCCCCACTGTCCTCGTCACAAACAGAAGGAGGATGTGGGCCAACAGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCAAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAGCGACATGATGTGGCCCATACAGGCAAGGTCATTTGTATTTCGGATGTCACTCGTGGTAATGGGCTGACCCATCGTGTAGGGAAGAGGTTTTGCATTAAGTCCGTTTATGTGTTGGGTAAAATCTGGATGGATGAAAACATCAAGGTTAAAAACCACACCAACACTTGTATGTTCTTTGTTGTTAGGGATAGAAGGCCATATGGCACTCCTATGGATTTTGGTCAGGTGTTCAACATGTATGACAATGAGCCCAGTACAGCCACTGTGAAGAACGATCTCAGGGATCGTTTTCAAGTTCTACGCCGTTTTGCAGGAACTGTGACAGGTGGTCAGTATGCTTCCAAGGAGCAGGCTTTGGTTAGGAAGTTCATGAGGGTCAACAATCATGTGGTGTATAACCATCAAGAAACTGCAAAGTATGAGAACCATACTGAGAATGCGTTGTTGTTGTATATGGCATGTACACATGCAAGTAATCCATTGTATGCAACCATGAAGATCAGGATCTATTTTTATGATTCTGTTCAAAATTAATAAACGTTAAATTTTATTATATTTGCTAATTGAGCATCAATTGTGCCCTCAAGTACATCGTATAACACATGAGAAAAAGCCCTAATTACATTGTTAATACTAATCACTCCTAATCTATCTAAATACTTCATACATTGATACTTAAAAACCCTTAAGAAATGCCAGGTCTGAGGATGTAAACGAGTCCAGATCTGGCAGGTCAGAAAACACTGGTGTATCCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGGACCTGGACTGTTATGATGTCTCTGTTTGTCATGAATGTGTTGTGTATGTGGTTGGTTATCTTGAAATAGAGGGGATTTCTGAGCGTCCAGGTATACACGCCACTCTTTGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGAGAATCCATGTGATGCGCAGTTTAGTCCAAGATAGTATGAGCAGCCGCACGGGAGATCAATTCTGCGTCTCCGTGGTGGTCTCTGCTTGGATATCTTGTGTTGGACCTTGATGGGTACCTGAGTACAATGGTTGCGTGAGGGTGATGAATTCTGCATTCTTGATGGACCAGTCTTTGAGTGCTGAATTCTTATCCTCGTCCAAGTACTCTTTATATGATGACGTGGGTCCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGGCTTAGATCTAGGTGGCCACATAAATAATTATGTGGGCCTAGTGATCTGGCCCACATGGTTTTCCCTGTACGACTATCACCCTCTATTACAATACTCTTGGGCCTCCATGGCCGCGCAGCGGCACCCATGACGTTTTCAGACACCCAGACTTCAAGTTCCTCTGGAACTTGATCAAATGAAGAAGACAAAAAAGGACTAACAAATACTTCTACAGGAGCTTGAAAAATCCTATCTAAATTGGCAGTTAAATTATGGAATTGTAAAACATAATCTTTAGGGGCTAATTCCCTAATTACATTAAGAGCCTCTGACTTACTGCCTGTGTTAAGCGCCTGGGCGTAAGCATCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCGCCCCAATCGAGGGTGTCGCCGTCCTTATCGATGTAGGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGTAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTGGATTTTGGCATTGGTATTTGCCCTCGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCATGTAATTCTCTGCAAATCTTAATGTATTTTTTGTTTGTTGGGGTATTTAGGTTTTGCAATTGGGAAAGTGCTTCCTCTTTGGTTAGTGAACACTGAGGGTATGTGAGAAAATAATTTTTGGCATTTATTTTAAATTTTTTAGGGGGAGCCATTGACTTGGTCAATCGGTGTCTCTCAAAGTTGTCCTGCAATTGGTGTATTGGGGTCTTATTTATATGAGACCCCAAATGGCATTCTCGTAATTCCCCAAAGAAATTCAAAATTCAAATTTGAAATCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009506448.1
Location 133-501
Gene Name av2
Protein Name AV2
Coding Region ATGTGGGATCCACTTGAGAACGAATTCCCAGATACGGTGCACGGTCTACGGTGTATGCTGGCCGTAAAATACTGTCAACTTATTGAAGATACATACGCTCCAGATACGTTGGGCTACGATCTTATACGTGACTTGATCCTTGTTATTCGAGCACGTAGCTATGTCGAAGCGACCCGCAGATATAGTCATTTCAACTCCCGCCTCGAAGGTACGTCGCAGGCTGAACTTCGAGTCCCCAGGAATGAGCCGTGCCACTGTCCCCACTGTCCTCGTCACAAACAGAAGGAGGATGTGGGCCAACAGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCAAAGGGCTGTGA
Protein Sequence MWDPLENEFPDTVHGLRCMLAVKYCQLIEDTYAPDTLGYDLIRDLILVIRARSYVEATRRYSHFNSRLEGTSQAELRVPRNEPCHCPHCPRHKQKEDVGQQAHVPKAQDVQDVQKPRCSKGL

NCBI Accession YP_009506449.1
Location 178-627
Gene Name ac5
Protein Name AC5
Coding Region ATGCAAAACCTCTTCCCTACACGATGGGTCAGCCCATTACCACGAGTGACATCCGAAATACAAATGACCTTGCCTGTATGGGCCACATCATGTCGCTGTTCAAATGACTGGACCTTACATGGGCCTTCACAGCCCTTTGGAACATCTGGGCTTCTGTACATCCTGTACATCCTGGGCTTTCGGTACATGGGCCTGTTGGCCCACATCCTCCTTCTGTTTGTGACGAGGACAGTGGGGACAGTGGCACGGCTCATTCCTGGGGACTCGAAGTTCAGCCTGCGACGTACCTTCGAGGCGGGAGTTGAAATGACTATATCTGCGGGTCGCTTCGACATAGCTACGTGCTCGAATAACAAGGATCAAGTCACGTATAAGATCGTAGCCCAACGTATCTGGAGCGTATGTATCTTCAATAAGTTGACAGTATTTTACGGCCAGCATACACCGTAG
Protein Sequence MQNLFPTRWVSPLPRVTSEIQMTLPVWATSCRCSNDWTLHGPSQPFGTSGLLYILYILGFRYMGLLAHILLLFVTRTVGTVARLIPGDSKFSLRRTFEAGVEMTISAGRFDIATCSNNKDQVTYKIVAQRIWSVCIFNKLTVFYGQHTP

NCBI Accession YP_009506450.1
Location 293-1066
Gene Name av1
Protein Name AV1
Coding Region ATGTCGAAGCGACCCGCAGATATAGTCATTTCAACTCCCGCCTCGAAGGTACGTCGCAGGCTGAACTTCGAGTCCCCAGGAATGAGCCGTGCCACTGTCCCCACTGTCCTCGTCACAAACAGAAGGAGGATGTGGGCCAACAGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCAAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAGCGACATGATGTGGCCCATACAGGCAAGGTCATTTGTATTTCGGATGTCACTCGTGGTAATGGGCTGACCCATCGTGTAGGGAAGAGGTTTTGCATTAAGTCCGTTTATGTGTTGGGTAAAATCTGGATGGATGAAAACATCAAGGTTAAAAACCACACCAACACTTGTATGTTCTTTGTTGTTAGGGATAGAAGGCCATATGGCACTCCTATGGATTTTGGTCAGGTGTTCAACATGTATGACAATGAGCCCAGTACAGCCACTGTGAAGAACGATCTCAGGGATCGTTTTCAAGTTCTACGCCGTTTTGCAGGAACTGTGACAGGTGGTCAGTATGCTTCCAAGGAGCAGGCTTTGGTTAGGAAGTTCATGAGGGTCAACAATCATGTGGTGTATAACCATCAAGAAACTGCAAAGTATGAGAACCATACTGAGAATGCGTTGTTGTTGTATATGGCATGTACACATGCAAGTAATCCATTGTATGCAACCATGAAGATCAGGATCTATTTTTATGATTCTGTTCAAAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFESPGMSRATVPTVLVTNRRRMWANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEQRHDVAHTGKVICISDVTRGNGLTHRVGKRFCIKSVYVLGKIWMDENIKVKNHTNTCMFFVVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRFQVLRRFAGTVTGGQYASKEQALVRKFMRVNNHVVYNHQETAKYENHTENALLLYMACTHASNPLYATMKIRIYFYDSVQN

NCBI Accession YP_009506451.1
Location 1063-1467
Gene Name ac3
Protein Name AC3
Coding Region ATGGATTCTCGCACAGGGGAGTACATCACTGCAGCTCAAGCAAAGAGTGGCGTGTATACCTGGACGCTCAGAAATCCCCTCTATTTCAAGATAACCAACCACATACACAACACATTCATGACAAACAGAGACATCATAACAGTCCAGGTCCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTGACCTGCCAGATCTGGACTCGTTTACATCCTCAGACCTGGCATTTCTTAAGGGTTTTTAAGTATCAATGTATGAAGTATTTAGATAGATTAGGAGTGATTAGTATTAACAATGTAATTAGGGCTTTTTCTCATGTGTTATACGATGTACTTGAGGGCACAATTGATGCTCAATTAGCAAATATAATAAAATTTAACGTTTATTAA
Protein Sequence MDSRTGEYITAAQAKSGVYTWTLRNPLYFKITNHIHNTFMTNRDIITVQVQFNHNLRKALGIHQCFLTCQIWTRLHPQTWHFLRVFKYQCMKYLDRLGVISINNVIRAFSHVLYDVLEGTIDAQLANIIKFNVY

NCBI Accession YP_009506452.1
Location 1208-1615
Gene Name ac2
Protein Name AC2
Coding Region ATGCAGAATTCATCACCCTCACGCAACCATTGTACTCAGGTACCCATCAAGGTCCAACACAAGATATCCAAGCAGAGACCACCACGGAGACGCAGAATTGATCTCCCGTGCGGCTGCTCATACTATCTTGGACTAAACTGCGCATCACATGGATTCTCGCACAGGGGAGTACATCACTGCAGCTCAAGCAAAGAGTGGCGTGTATACCTGGACGCTCAGAAATCCCCTCTATTTCAAGATAACCAACCACATACACAACACATTCATGACAAACAGAGACATCATAACAGTCCAGGTCCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTGACCTGCCAGATCTGGACTCGTTTACATCCTCAGACCTGGCATTTCTTAAGGGTTTTTAA
Protein Sequence MQNSSPSRNHCTQVPIKVQHKISKQRPPRRRRIDLPCGCSYYLGLNCASHGFSHRGVHHCSSSKEWRVYLDAQKSPLFQDNQPHTQHIHDKQRHHNSPGPVQPQPEESVGDTPVFSDLPDLDSFTSSDLAFLKGF

NCBI Accession YP_009506453.1
Location 1515-2603
Gene Name ac1
Protein Name AC1
Coding Region ATGGCTCCCCCTAAAAAATTTAAAATAAATGCCAAAAATTATTTTCTCACATACCCTCAGTGTTCACTAACCAAAGAGGAAGCACTTTCCCAATTGCAAAACCTAAATACCCCAACAAACAAAAAATACATTAAGATTTGCAGAGAATTACATGAAGATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATACCAATGCCAAAATCCACGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTACCATCCAAACATTCAGGGAGCTAAATCAAGCTCGGACGTCAAGTCCTACATCGATAAGGACGGCGACACCCTCGATTGGGGCGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGATGCTTACGCCCAGGCGCTTAACACAGGCAGTAAGTCAGAGGCTCTTAATGTAATTAGGGAATTAGCCCCTAAAGATTATGTTTTACAATTCCATAATTTAACTGCCAATTTAGATAGGATTTTTCAAGCTCCTGTAGAAGTATTTGTTAGTCCTTTTTTGTCTTCTTCATTTGATCAAGTTCCAGAGGAACTTGAAGTCTGGGTGTCTGAAAACGTCATGGGTGCCGCTGCGCGGCCATGGAGGCCCAAGAGTATTGTAATAGAGGGTGATAGTCGTACAGGGAAAACCATGTGGGCCAGATCACTAGGCCCACATAATTATTTATGTGGCCACCTAGATCTAAGCCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGTGGTATCCCAACAATCTTCCTCTGCAATCCAGGACCCACGTCATCATATAAAGAGTACTTGGACGAGGATAAGAATTCAGCACTCAAAGACTGGTCCATCAAGAATGCAGAATTCATCACCCTCACGCAACCATTGTACTCAGGTACCCATCAAGGTCCAACACAAGATATCCAAGCAGAGACCACCACGGAGACGCAGAATTGA
Protein Sequence MAPPKKFKINAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYQCQNPRFFDLVSPTRSAHYHPNIQGAKSSSDVKSYIDKDGDTLDWGEFQIDGRSARGGQQSANDAYAQALNTGSKSEALNVIRELAPKDYVLQFHNLTANLDRIFQAPVEVFVSPFLSSSFDQVPEELEVWVSENVMGAAARPWRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKDWSIKNAEFITLTQPLYSGTHQGPTQDIQAETTTETQN

NCBI Accession YP_009506454.1
Location 2156-2452
Gene Name ac4
Protein Name AC4
Coding Region ATGAAGATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATACCAATGCCAAAATCCACGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTACCATCCAAACATTCAGGGAGCTAAATCAAGCTCGGACGTCAAGTCCTACATCGATAAGGACGGCGACACCCTCGATTGGGGCGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGATGCTTACGCCCAGGCGCTTAACACAGGCAGTAAGTCAGAGGCTCTTAATGTAA
Protein Sequence MKMGALISMCSSSSRANTNAKIHDSSTWYPQPGQHITIQTFRELNQARTSSPTSIRTATPSIGASFRSMDDLQEGDNNQPMMLTPRRLTQAVSQRLLM

References More References in PubMed

1

Cotton leaf curl virus disease.

Briddon RW, et al.  Virus Res. 2000 Nov;71(1-2):151-9. doi: 10.1016/s0168-1702(00)00195-7.

PMID: 11137169
2

Tomato Yellow Leaf Curl Sardinia Virus Increases Drought Tolerance of Tomato.

Sacco Botto C, et al.  Int J Mol Sci. 2023 Feb 2;24(3):2893. doi: 10.3390/ijms24032893.

PMID: 36769211
3

Cotton leaf curl Multan virus subverts the processing of hydroxyproline-rich systemin to suppress tobacco defenses against insect vectors.

Chen N, et al.  J Exp Bot. 2024 Sep 27;75(18):5819-5838. doi: 10.1093/jxb/erae257.

PMID: 38829390
4

Tomato Leaf Curl New Delhi Virus: An Emerging Virus Complex Threatening Vegetable and Fiber Crops.

Moriones E, et al.  Viruses. 2017 Sep 21;9(10):264. doi: 10.3390/v9100264.

PMID: 28934148
5

Tomato Yellow Leaf Curl Virus (TYLCV) Promotes Plant Tolerance to Drought.

Shteinberg M, et al.  Cells. 2021 Oct 25;10(11):2875. doi: 10.3390/cells10112875.

PMID: 34831098
6

Detection of Tomato Leaf Curl New Delhi Virus-ES by Real-Time Quantitative PCR.

Janssen D, et al.  Methods Mol Biol. 2025;2912:145-156. doi: 10.1007/978-1-0716-4454-6_12.

PMID: 40064778
7

Tomato yellow leaf curl virus, an emerging virus complex causing epidemics worldwide.

Moriones E, et al.  Virus Res. 2000 Nov;71(1-2):123-34. doi: 10.1016/s0168-1702(00)00193-3.

PMID: 11137167
8

Tomato yellow leaf curl virus (TYLCV) in Kuwait and global analysis of the population structure and evolutionary pattern of TYLCV.

Akbar A, et al.  Virol J. 2024 Nov 27;21(1):308. doi: 10.1186/s12985-024-02540-6.

PMID: 39605076
9

Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.

Ascencio-Ibáñez JT, et al.  Plant Physiol. 2008 Sep;148(1):436-54. doi: 10.1104/pp.108.121038. Epub 2008 Jul 23.

PMID: 18650403
10

Identification of the determinant of tomato yellow leaf curl Kanchanaburi virus infectivity in tomato.

An JW, et al.  Virus Res. 2021 Jan 2;291:198192. doi: 10.1016/j.virusres.2020.198192. Epub 2020 Oct 13.

PMID: 33058965