Potato yellow mosaic virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000838665.1
Release date 2015/2/12
Submitter Fontes,E.P., Eagle,P.A., Sipe,P.S., Luckow,V.A., Hanley-Bowdoin,L., Coutts,R.H., Coffin,R.S., Roberts,E.J., Hamilton,W.D., Gladfelter,H.J., Schaffer,R.L., Petty,I.T.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_001934
TTTCGTGGCATTTTTGTAAATATGAATGTTCTCCCAATATGTTCCCCCTATTGCTCTGGCTCTCAAAACTCTTATGAATTGGGGGAACTGGGGGAACTTATATAGTAGAAGTTCCTAAAGGCAGATCAACACGTGCGGCCATCCGTTATAATATTACCGGATGGCCGCGTTTTTTTTTTAATGGGCCTTATTTGTAATGGGCTTTAATTTGGCCCAATCAACGTTAGTCTGACACACCTAGATAAGTGGAATTACTTTGTCGCTAAGTTGTGATTTTGTCTATAAATTAAAGCCTCTTGGCCCACTATCTTTAACTCAAAATGCCTAAGCGCGATGCCCCATGGCGTTCAATGGCGGGAACCTCAAAGGTTAGCCGCAACGCTAATTACTCTCCTCGTTCAGGAATTGGGCCAAGAATAAACAAGGCCGCTGAATGGGTTAATAGGCCCATGTACCGGAAGCCCAGGATCTATCGGACGCTGAGGACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCTTGTAAGGTCCAGTCTTTCGAGCAGCGACACGATATCTTACACACTGGCAAGGTAATGTGCATATCTGACGTTACTCGCGGTAACGGTATTACTCACCGTGTCGGGAAGCGGTTCTGTGTTAAGTCCGTTTACATATTAGGTAAGATATGGATGGACGAGAATATCAAGCTGAAGAACCACACCAACAGCGTCATGTTCTGGCTGGTCAGAGACCGAAGACCGTATGGAACGCCTATGGATTTCGGACAAGTGTTCAACATGTTCGACAATGAGCCTAGCACCGCCACTGTTAAGAACGATCTTCGTGATCGTTATCAGGTCATGCATAGGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCATGCTATTGTGAGGCGTTTCTGGAAGGTCAACAACCACGTTGTTTACAACCACCAGGAAGCTGGCAAATACGAGAATCATACTGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCAAATCCTGTATATGCAACACTTAAGATTCGGATCTATTTTTATGATTCGATCTTAAATTAATAAAATTTATATTTTATTGAATGATTTTCCAGTACATAATTTACATATGATCTATCTGTTGCAAAACGAACAGATCTAATTACATTGTTAATTGAAATGACACCTAACCGGTCTAAGTACAGAAGAACTAATTGTCTAAATCTAGCTAAATAATTCGACCCAGAAGCTGTCATCGATGTCGTCCAGACTTGGAAGTTCAGGTATGCTTTGTGGAGATCCAATGCTCTCCTGAGGTTGTGGTTGAACCGGATTTGGACGCTGTATATCCTGGTCCTGGTGTATTGCATGTCCTCTACTTGGTTTATCTTGAAATAGAGGGGATTTTCTATCTCCCAGATAAACACGCCATTCTCTGCCTGACGTGCAGTGATGAGCTCCCCTGTGCGTGAATCCATGTCCTGCGCAGTCTATGTGGAAGTATATGGAGCAACCGCAGTCTAAGTCAATGCGTCTCCTCCTGATTGCCCTCTTCTTTGCTTGCCTGTGTGCCTTCTTGATAGAGGGGGGCTGTGATGGTGATGAAGACCGCATTCTTTAGAGTCCAGTTTTTGAGAGACGCATTTTCGTCTTTGTCGAGGAAAGCTTTATAGCTGGAACCCTCACCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGTACTTACAATTTGATTGCCAATCCCTTTGGGCCCCAAGCAGTTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCATTCGAATAGACCCTGGGATTGAAATCAAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACTCGCGCCCACATCGTCTTGCCTCTTCGAGAATCACCTTCAATTATAATACTAATAGGTCTTTCTGGGCGCGCCGCACTACTCTTTCCGAAATAACCATCTGCCCACTCTTGCATCTCGTCGGGAACGTTAGTGAAAGAGGAGAGTGGAAACGGAGGAGCCCATGTCTCTGGAGCCTTCATGAAAATCCTATCGAGGTTACAGGATAGGTTATGATACTGAAAAAGAAACTTTTCCGGCAACTTCTCTTTAATGATTTTCATGGCTGCTTCCTTTGTTCCAGAGTTTAGTGCCTCGGCAGCTGCGTCGTTAACTGTCTGCTGGCCCCCTCGAGCACTTCTTCCGTCAATCTGGAACAAACCCCATTCGATGGTGTCTCCGTCTTTCTCGACATACGACTTGACATCGGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGACACCAGATCGAACAGTCTGTTATTTGTGCAGTTGTATTTGCCTTCGAACTGGATAAGAACGTGGAGATGAGGTTCCCCATTCTCGTGAAGTTCTCTGCAAATCTTGATGAATTTCTTGTTGACTGGGATAGTTAGGTTTTGAAGTTGGGAAAGTGCTTCTTCTTTGCTAATAGAGCATTGAGGATACGTAAGGAAATAATTTTTGGCTTTAATAGAGAACGAACCC

NC_001935
TTTCGGGGCATTTTGATAAATATTAGTGTTCCCCCGATATGTTCCCCCAATTGCTCTGGCCCTCAAAACTCTTATGAATTGGGGGAACTGGGGGAACTTATATAGTAGAAGTTCCTAAAGGCAGATCAACACGTGCGGCCATCCGTTATAATATTACCGGATGGCCGCGAGATTTTTTATACTGGGCTTTCTACTAAGGCCCAAGTATGATTGGACTCTAGGCCCATTTTTTAGCGGTCCCTCTTTTTCCTCGTCCTTTCTCTGCTGTTTCCTTTTACTTTAATTTAAATCACTCTTAAATTAAATATGTTGTGATCAATTTCAACAGCTGTCCCGCATAATATATGTACTGACGACGTGGGTAATTCTCGACCAAGTTACAGTGTTAAGTCGAAATTGATTTTAACGTCTCTCCATTTATGAGCTCATGGTCCTATTAAGCATTACATTACACGTGTACCATTTAAATTGATCGTGTGGAGTCAATTTAATTAATTGTATAACCTGATATGTCTATATATTCGCTGACTAGGAATGAGCTCATTATTACGTGGTACAAAGACATTACATGATAATGTATCCTAATAGGCACAGGCGTGCTTCTTTTTGTAGCCAGCCACGTACTTACCCACGTAATAGTTTGATTAGACAGCAGTCATTATTCAAGCGTAATGTTAGCAAACGACGACCATTTCAAACCGTGAAGATGGTTGATGACTCCATGATGAAGGCACAACGTATTCATGAGAATCAATACGGTCCAGATTTTTCACTGGCCCATAATACAGCCGTCTCTACATTTATAAGTTACCCTGATATTGCTAAGTCTCTGCCCAATAGAACCAGGTCATATATTAAGCTAAAACGACTTCGGTTCAAGGGTATTGTGAAGGTGGAACGTGTACATGTAGAGGTTAACATGGACTGTTCTGTGCCTAAGACCGAAGGAGTTTTCTCTTTGGTTATTGTAGTGGATCGTAAACCTCACCTTGGACCCTCTGGGGGACTGCCTACATTTGACGAGCTATTTGGCGCTAGGATCCACAGTCATGGTAACTTGGCAATAGTTCCATCTCTGAAGGATCGGTTCTACATACGCCATGTACTGAAGCGTGTGATATCAGTCGAGAAGGACACCATGATGGTGGACATAGAAGGTGTTGTAGCCCTTTCTAGCAGACGTTTTAATTGTTGGGCTGGTTTTAAGGACCTTGACATAGAGTCCCGAAAGGGTGTTTATGATAACATTAATAAGAACGCCCTGTTAGTTTATTATTGTTGGATGTCGGATACAGTATCCAAAGCATCCACATTTGTATCGTTTGATCTTGATTATATTGGATGATTGTATTCACTAATACAAATTTTATTTAAAATTTTTTGGCTGAGAACTATTACAATTACTCTTTATACATTCTTGGACAGTTGTCCTTACAAGTTCATTTAACTGGGCTACGGACATGGTTATGTTCGATTGGGCCATGTTAGCACCAACTATAGATGCTGACTCTCCTGGATCTAGGACGCTGGCTCCTAGTCTTTGCAAATCTCGATACGTATGTAGCTCGTTCTCTATCTCTGACTCGCCCTCTGATTGACCCACTCCTATTGTACTCCTGGAAGCCCATGATTCACCAGGCCTTATTTCAATTGGGCCTCTGAGCCCAACTCTGGACATTGATGCGCATCTAATGGGCTTCCTCTCCCATCTCCCGTAGTCGACGTGCGAGAAATCCACGTCCTTATCTGTGAACTGTTTGGACAGGATCTTGACCGTTGGTGCTCTGAACGGAATGTCTACGGAATGTTTCGCCGTCGACAGTTTCAGCTTCCCTTTGAACTTGGCAAAGTGTGTCCGTTGATGAACGTTCGTGTCGGAAACTCTGTAATAGAGTTTCCATGGGATAGGATCTTTTAGGGAGAAAAAGGAAGCTGAGAAATAGTGGAGATCTATGTTGCATCTTAACGGGAACGTCCATGACGCCTGCAGAGATTCGTTGTCTGTCATCCTCTTATCATGAATCTCCACTATTACAGACCCGGTGGCGTTGATGGGTACCTGTTGCCTGTACTCAATTACGCAGTGGTCTATCTTCATACAGCTGCGACTGAGCCTCGCCGTTAACTGCGCCGCCGTCGACGGAAATTGCAGTATTATCTCAGTTAGGTCATGCGAAAGCTGATATTCATCCCGTTGAGACTCTATGTAATTGAAAGCATGAGGAGGATTAACTAACTGAGAATTCATTTATTGAAAATTAGGCCGCGCAGCGGCACCGCTTCCAGAATATGAACAGGAAAAGAGGATGATAGGGTTTCTCGAACAGGCAAGACGATGATCTTGAAGAGAAGACAGAGAAATATAATAGTGCTATGGAAGACTCTGAATATGTTAATGTTCAAGGATTAGGTAGTTTATATAAAGAAGTTGTTACTGCTGAGGTACCAATTAAGAAATTTGAAGTTGGGAAAGTGCATCTTCTTTGCTAAGATAGTATTGAGGATTCGTAAGGAAATAATTTTTGGCTTAAATAGAGAACGAGCCTT

Gene Information

NCBI Accession NP_047237.1
Location 1519-2593,1-11
Gene Name al1
Protein Name AL1 protein
Coding Region ATGCCACGAAAGGGTTCGTTCTCTATTAAAGCCAAAAATTATTTCCTTACGTATCCTCAATGCTCTATTAGCAAAGAAGAAGCACTTTCCCAACTTCAAAACCTAACTATCCCAGTCAACAAGAAATTCATCAAGATTTGCAGAGAACTTCACGAGAATGGGGAACCTCATCTCCACGTTCTTATCCAGTTCGAAGGCAAATACAACTGCACAAATAACAGACTGTTCGATCTGGTGTCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGATGTCAAGTCGTATGTCGAGAAAGACGGAGACACCATCGAATGGGGTTTGTTCCAGATTGACGGAAGAAGTGCTCGAGGGGGCCAGCAGACAGTTAACGACGCAGCTGCCGAGGCACTAAACTCTGGAACAAAGGAAGCAGCCATGAAAATCATTAAAGAGAAGTTGCCGGAAAAGTTTCTTTTTCAGTATCATAACCTATCCTGTAACCTCGATAGGATTTTCATGAAGGCTCCAGAGACATGGGCTCCTCCGTTTCCACTCTCCTCTTTCACTAACGTTCCCGACGAGATGCAAGAGTGGGCAGATGGTTATTTCGGAAAGAGTAGTGCGGCGCGCCCAGAAAGACCTATTAGTATTATAATTGAAGGTGATTCTCGAAGAGGCAAGACGATGTGGGCGCGAGTCTTAGGCCCACATAATTACTTGAGCGGTCATCTTGATTTCAATCCCAGGGTCTATTCGAATGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCAATATCTAAAGCTAAAGCACTGGAAAGAACTGCTTGGGGCCCAAAGGGATTGGCAATCAAATTGTAAGTACGGAAAGCCTGTTCAAATTAAAGGCGGTATCCCATCAATCGTGCTCTGCAATCCTGGTGAGGGTTCCAGCTATAAAGCTTTCCTCGACAAAGACGAAAATGCGTCTCTCAAAAACTGGACTCTAAAGAATGCGGTCTTCATCACCATCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCAAAGAAGAGGGCAATCAGGAGGAGACGCATTGA
Protein Sequence MPRKGSFSIKAKNYFLTYPQCSISKEEALSQLQNLTIPVNKKFIKICRELHENGEPHLHVLIQFEGKYNCTNNRLFDLVSPTRSTHFHPNIQGAKSSSDVKSYVEKDGDTIEWGLFQIDGRSARGGQQTVNDAAAEALNSGTKEAAMKIIKEKLPEKFLFQYHNLSCNLDRIFMKAPETWAPPFPLSSFTNVPDEMQEWADGYFGKSSAARPERPISIIIEGDSRRGKTMWARVLGPHNYLSGHLDFNPRVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKAFLDKDENASLKNWTLKNAVFITITAPLYQEGTQASKEEGNQEETH

NCBI Accession NP_047238.1
Location 321-1076
Gene Name ar1
Protein Name AR1 protein
Coding Region ATGCCTAAGCGCGATGCCCCATGGCGTTCAATGGCGGGAACCTCAAAGGTTAGCCGCAACGCTAATTACTCTCCTCGTTCAGGAATTGGGCCAAGAATAAACAAGGCCGCTGAATGGGTTAATAGGCCCATGTACCGGAAGCCCAGGATCTATCGGACGCTGAGGACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCTTGTAAGGTCCAGTCTTTCGAGCAGCGACACGATATCTTACACACTGGCAAGGTAATGTGCATATCTGACGTTACTCGCGGTAACGGTATTACTCACCGTGTCGGGAAGCGGTTCTGTGTTAAGTCCGTTTACATATTAGGTAAGATATGGATGGACGAGAATATCAAGCTGAAGAACCACACCAACAGCGTCATGTTCTGGCTGGTCAGAGACCGAAGACCGTATGGAACGCCTATGGATTTCGGACAAGTGTTCAACATGTTCGACAATGAGCCTAGCACCGCCACTGTTAAGAACGATCTTCGTGATCGTTATCAGGTCATGCATAGGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCATGCTATTGTGAGGCGTTTCTGGAAGGTCAACAACCACGTTGTTTACAACCACCAGGAAGCTGGCAAATACGAGAATCATACTGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCAAATCCTGTATATGCAACACTTAAGATTCGGATCTATTTTTATGATTCGATCTTAAATTAA
Protein Sequence MPKRDAPWRSMAGTSKVSRNANYSPRSGIGPRINKAAEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSFEQRHDILHTGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYGKVTGGQYASNEHAIVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSILN

NCBI Accession NP_047239.1
Location 1073-1471
Gene Name al3
Protein Name AL3 protein
Coding Region ATGGATTCACGCACAGGGGAGCTCATCACTGCACGTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATAAACCAAGTAGAGGACATGCAATACACCAGGACCAGGATATACAGCGTCCAAATCCGGTTCAACCACAACCTCAGGAGAGCATTGGATCTCCACAAAGCATACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCGAATTATTTAGCTAGATTTAGACAATTAGTTCTTCTGTACTTAGACCGGTTAGGTGTCATTTCAATTAACAATGTAATTAGATCTGTTCGTTTTGCAACAGATAGATCATATGTAAATTATGTACTGGAAAATCATTCAATAAAATATAAATTTTATTAA
Protein Sequence MDSRTGELITARQAENGVFIWEIENPLYFKINQVEDMQYTRTRIYSVQIRFNHNLRRALDLHKAYLNFQVWTTSMTASGSNYLARFRQLVLLYLDRLGVISINNVIRSVRFATDRSYVNYVLENHSIKYKFY

NCBI Accession NP_047240.1
Location 1218-1607
Gene Name al2
Protein Name AL2 protein
Coding Region ATGCGGTCTTCATCACCATCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCAAAGAAGAGGGCAATCAGGAGGAGACGCATTGACTTAGACTGCGGTTGCTCCATATACTTCCACATAGACTGCGCAGGACATGGATTCACGCACAGGGGAGCTCATCACTGCACGTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATAAACCAAGTAGAGGACATGCAATACACCAGGACCAGGATATACAGCGTCCAAATCCGGTTCAACCACAACCTCAGGAGAGCATTGGATCTCCACAAAGCATACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCGAATTATTTAGCTAG
Protein Sequence MRSSSPSQPPSIKKAHRQAKKRAIRRRRIDLDCGCSIYFHIDCAGHGFTHRGAHHCTSGREWRVYLGDRKSPLFQDKPSRGHAIHQDQDIQRPNPVQPQPQESIGSPQSIPELPSLDDIDDSFWVELFS

NCBI Accession NP_047241.1
Location 575-1345
Gene Name br1
Protein Name BR1 protein
Coding Region ATGTATCCTAATAGGCACAGGCGTGCTTCTTTTTGTAGCCAGCCACGTACTTACCCACGTAATAGTTTGATTAGACAGCAGTCATTATTCAAGCGTAATGTTAGCAAACGACGACCATTTCAAACCGTGAAGATGGTTGATGACTCCATGATGAAGGCACAACGTATTCATGAGAATCAATACGGTCCAGATTTTTCACTGGCCCATAATACAGCCGTCTCTACATTTATAAGTTACCCTGATATTGCTAAGTCTCTGCCCAATAGAACCAGGTCATATATTAAGCTAAAACGACTTCGGTTCAAGGGTATTGTGAAGGTGGAACGTGTACATGTAGAGGTTAACATGGACTGTTCTGTGCCTAAGACCGAAGGAGTTTTCTCTTTGGTTATTGTAGTGGATCGTAAACCTCACCTTGGACCCTCTGGGGGACTGCCTACATTTGACGAGCTATTTGGCGCTAGGATCCACAGTCATGGTAACTTGGCAATAGTTCCATCTCTGAAGGATCGGTTCTACATACGCCATGTACTGAAGCGTGTGATATCAGTCGAGAAGGACACCATGATGGTGGACATAGAAGGTGTTGTAGCCCTTTCTAGCAGACGTTTTAATTGTTGGGCTGGTTTTAAGGACCTTGACATAGAGTCCCGAAAGGGTGTTTATGATAACATTAATAAGAACGCCCTGTTAGTTTATTATTGTTGGATGTCGGATACAGTATCCAAAGCATCCACATTTGTATCGTTTGATCTTGATTATATTGGATGA
Protein Sequence MYPNRHRRASFCSQPRTYPRNSLIRQQSLFKRNVSKRRPFQTVKMVDDSMMKAQRIHENQYGPDFSLAHNTAVSTFISYPDIAKSLPNRTRSYIKLKRLRFKGIVKVERVHVEVNMDCSVPKTEGVFSLVIVVDRKPHLGPSGGLPTFDELFGARIHSHGNLAIVPSLKDRFYIRHVLKRVISVEKDTMMVDIEGVVALSSRRFNCWAGFKDLDIESRKGVYDNINKNALLVYYCWMSDTVSKASTFVSFDLDYIG

NCBI Accession NP_047242.1
Location 1367-2248
Gene Name bl1
Protein Name BL1 protein
Coding Region ATGAATTCTCAGTTAGTTAATCCTCCTCATGCTTTCAATTACATAGAGTCTCAACGGGATGAATATCAGCTTTCGCATGACCTAACTGAGATAATACTGCAATTTCCGTCGACGGCGGCGCAGTTAACGGCGAGGCTCAGTCGCAGCTGTATGAAGATAGACCACTGCGTAATTGAGTACAGGCAACAGGTACCCATCAACGCCACCGGGTCTGTAATAGTGGAGATTCATGATAAGAGGATGACAGACAACGAATCTCTGCAGGCGTCATGGACGTTCCCGTTAAGATGCAACATAGATCTCCACTATTTCTCAGCTTCCTTTTTCTCCCTAAAAGATCCTATCCCATGGAAACTCTATTACAGAGTTTCCGACACGAACGTTCATCAACGGACACACTTTGCCAAGTTCAAAGGGAAGCTGAAACTGTCGACGGCGAAACATTCCGTAGACATTCCGTTCAGAGCACCAACGGTCAAGATCCTGTCCAAACAGTTCACAGATAAGGACGTGGATTTCTCGCACGTCGACTACGGGAGATGGGAGAGGAAGCCCATTAGATGCGCATCAATGTCCAGAGTTGGGCTCAGAGGCCCAATTGAAATAAGGCCTGGTGAATCATGGGCTTCCAGGAGTACAATAGGAGTGGGTCAATCAGAGGGCGAGTCAGAGATAGAGAACGAGCTACATACGTATCGAGATTTGCAAAGACTAGGAGCCAGCGTCCTAGATCCAGGAGAGTCAGCATCTATAGTTGGTGCTAACATGGCCCAATCGAACATAACCATGTCCGTAGCCCAGTTAAATGAACTTGTAAGGACAACTGTCCAAGAATGTATAAAGAGTAATTGTAATAGTTCTCAGCCAAAAAATTTTAAATAA
Protein Sequence MNSQLVNPPHAFNYIESQRDEYQLSHDLTEIILQFPSTAAQLTARLSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPLRCNIDLHYFSASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVDYGRWERKPIRCASMSRVGLRGPIEIRPGESWASRSTIGVGQSEGESEIENELHTYRDLQRLGASVLDPGESASIVGANMAQSNITMSVAQLNELVRTTVQECIKSNCNSSQPKNFK