Genus | Begomovirus |
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NCBI Assembly | GCF_000838665.1 |
Release date | 2015/2/12 |
Submitter | Fontes,E.P., Eagle,P.A., Sipe,P.S., Luckow,V.A., Hanley-Bowdoin,L., Coutts,R.H., Coffin,R.S., Roberts,E.J., Hamilton,W.D., Gladfelter,H.J., Schaffer,R.L., Petty,I.T. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_047237.1 |
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Location | 1519-2593,1-11 |
Gene Name | al1 |
Protein Name | AL1 protein |
Coding Region | ATGCCACGAAAGGGTTCGTTCTCTATTAAAGCCAAAAATTATTTCCTTACGTATCCTCAATGCTCTATTAGCAAAGAAGAAGCACTTTCCCAACTTCAAAACCTAACTATCCCAGTCAACAAGAAATTCATCAAGATTTGCAGAGAACTTCACGAGAATGGGGAACCTCATCTCCACGTTCTTATCCAGTTCGAAGGCAAATACAACTGCACAAATAACAGACTGTTCGATCTGGTGTCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGATGTCAAGTCGTATGTCGAGAAAGACGGAGACACCATCGAATGGGGTTTGTTCCAGATTGACGGAAGAAGTGCTCGAGGGGGCCAGCAGACAGTTAACGACGCAGCTGCCGAGGCACTAAACTCTGGAACAAAGGAAGCAGCCATGAAAATCATTAAAGAGAAGTTGCCGGAAAAGTTTCTTTTTCAGTATCATAACCTATCCTGTAACCTCGATAGGATTTTCATGAAGGCTCCAGAGACATGGGCTCCTCCGTTTCCACTCTCCTCTTTCACTAACGTTCCCGACGAGATGCAAGAGTGGGCAGATGGTTATTTCGGAAAGAGTAGTGCGGCGCGCCCAGAAAGACCTATTAGTATTATAATTGAAGGTGATTCTCGAAGAGGCAAGACGATGTGGGCGCGAGTCTTAGGCCCACATAATTACTTGAGCGGTCATCTTGATTTCAATCCCAGGGTCTATTCGAATGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCAATATCTAAAGCTAAAGCACTGGAAAGAACTGCTTGGGGCCCAAAGGGATTGGCAATCAAATTGTAAGTACGGAAAGCCTGTTCAAATTAAAGGCGGTATCCCATCAATCGTGCTCTGCAATCCTGGTGAGGGTTCCAGCTATAAAGCTTTCCTCGACAAAGACGAAAATGCGTCTCTCAAAAACTGGACTCTAAAGAATGCGGTCTTCATCACCATCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCAAAGAAGAGGGCAATCAGGAGGAGACGCATTGA |
Protein Sequence | MPRKGSFSIKAKNYFLTYPQCSISKEEALSQLQNLTIPVNKKFIKICRELHENGEPHLHVLIQFEGKYNCTNNRLFDLVSPTRSTHFHPNIQGAKSSSDVKSYVEKDGDTIEWGLFQIDGRSARGGQQTVNDAAAEALNSGTKEAAMKIIKEKLPEKFLFQYHNLSCNLDRIFMKAPETWAPPFPLSSFTNVPDEMQEWADGYFGKSSAARPERPISIIIEGDSRRGKTMWARVLGPHNYLSGHLDFNPRVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKAFLDKDENASLKNWTLKNAVFITITAPLYQEGTQASKEEGNQEETH |
NCBI Accession | NP_047238.1 |
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Location | 321-1076 |
Gene Name | ar1 |
Protein Name | AR1 protein |
Coding Region | ATGCCTAAGCGCGATGCCCCATGGCGTTCAATGGCGGGAACCTCAAAGGTTAGCCGCAACGCTAATTACTCTCCTCGTTCAGGAATTGGGCCAAGAATAAACAAGGCCGCTGAATGGGTTAATAGGCCCATGTACCGGAAGCCCAGGATCTATCGGACGCTGAGGACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCTTGTAAGGTCCAGTCTTTCGAGCAGCGACACGATATCTTACACACTGGCAAGGTAATGTGCATATCTGACGTTACTCGCGGTAACGGTATTACTCACCGTGTCGGGAAGCGGTTCTGTGTTAAGTCCGTTTACATATTAGGTAAGATATGGATGGACGAGAATATCAAGCTGAAGAACCACACCAACAGCGTCATGTTCTGGCTGGTCAGAGACCGAAGACCGTATGGAACGCCTATGGATTTCGGACAAGTGTTCAACATGTTCGACAATGAGCCTAGCACCGCCACTGTTAAGAACGATCTTCGTGATCGTTATCAGGTCATGCATAGGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCATGCTATTGTGAGGCGTTTCTGGAAGGTCAACAACCACGTTGTTTACAACCACCAGGAAGCTGGCAAATACGAGAATCATACTGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCAAATCCTGTATATGCAACACTTAAGATTCGGATCTATTTTTATGATTCGATCTTAAATTAA |
Protein Sequence | MPKRDAPWRSMAGTSKVSRNANYSPRSGIGPRINKAAEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSFEQRHDILHTGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYGKVTGGQYASNEHAIVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSILN |
NCBI Accession | NP_047239.1 |
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Location | 1073-1471 |
Gene Name | al3 |
Protein Name | AL3 protein |
Coding Region | ATGGATTCACGCACAGGGGAGCTCATCACTGCACGTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATAAACCAAGTAGAGGACATGCAATACACCAGGACCAGGATATACAGCGTCCAAATCCGGTTCAACCACAACCTCAGGAGAGCATTGGATCTCCACAAAGCATACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCGAATTATTTAGCTAGATTTAGACAATTAGTTCTTCTGTACTTAGACCGGTTAGGTGTCATTTCAATTAACAATGTAATTAGATCTGTTCGTTTTGCAACAGATAGATCATATGTAAATTATGTACTGGAAAATCATTCAATAAAATATAAATTTTATTAA |
Protein Sequence | MDSRTGELITARQAENGVFIWEIENPLYFKINQVEDMQYTRTRIYSVQIRFNHNLRRALDLHKAYLNFQVWTTSMTASGSNYLARFRQLVLLYLDRLGVISINNVIRSVRFATDRSYVNYVLENHSIKYKFY |
NCBI Accession | NP_047240.1 |
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Location | 1218-1607 |
Gene Name | al2 |
Protein Name | AL2 protein |
Coding Region | ATGCGGTCTTCATCACCATCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCAAAGAAGAGGGCAATCAGGAGGAGACGCATTGACTTAGACTGCGGTTGCTCCATATACTTCCACATAGACTGCGCAGGACATGGATTCACGCACAGGGGAGCTCATCACTGCACGTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATAAACCAAGTAGAGGACATGCAATACACCAGGACCAGGATATACAGCGTCCAAATCCGGTTCAACCACAACCTCAGGAGAGCATTGGATCTCCACAAAGCATACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCGAATTATTTAGCTAG |
Protein Sequence | MRSSSPSQPPSIKKAHRQAKKRAIRRRRIDLDCGCSIYFHIDCAGHGFTHRGAHHCTSGREWRVYLGDRKSPLFQDKPSRGHAIHQDQDIQRPNPVQPQPQESIGSPQSIPELPSLDDIDDSFWVELFS |
NCBI Accession | NP_047241.1 |
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Location | 575-1345 |
Gene Name | br1 |
Protein Name | BR1 protein |
Coding Region | ATGTATCCTAATAGGCACAGGCGTGCTTCTTTTTGTAGCCAGCCACGTACTTACCCACGTAATAGTTTGATTAGACAGCAGTCATTATTCAAGCGTAATGTTAGCAAACGACGACCATTTCAAACCGTGAAGATGGTTGATGACTCCATGATGAAGGCACAACGTATTCATGAGAATCAATACGGTCCAGATTTTTCACTGGCCCATAATACAGCCGTCTCTACATTTATAAGTTACCCTGATATTGCTAAGTCTCTGCCCAATAGAACCAGGTCATATATTAAGCTAAAACGACTTCGGTTCAAGGGTATTGTGAAGGTGGAACGTGTACATGTAGAGGTTAACATGGACTGTTCTGTGCCTAAGACCGAAGGAGTTTTCTCTTTGGTTATTGTAGTGGATCGTAAACCTCACCTTGGACCCTCTGGGGGACTGCCTACATTTGACGAGCTATTTGGCGCTAGGATCCACAGTCATGGTAACTTGGCAATAGTTCCATCTCTGAAGGATCGGTTCTACATACGCCATGTACTGAAGCGTGTGATATCAGTCGAGAAGGACACCATGATGGTGGACATAGAAGGTGTTGTAGCCCTTTCTAGCAGACGTTTTAATTGTTGGGCTGGTTTTAAGGACCTTGACATAGAGTCCCGAAAGGGTGTTTATGATAACATTAATAAGAACGCCCTGTTAGTTTATTATTGTTGGATGTCGGATACAGTATCCAAAGCATCCACATTTGTATCGTTTGATCTTGATTATATTGGATGA |
Protein Sequence | MYPNRHRRASFCSQPRTYPRNSLIRQQSLFKRNVSKRRPFQTVKMVDDSMMKAQRIHENQYGPDFSLAHNTAVSTFISYPDIAKSLPNRTRSYIKLKRLRFKGIVKVERVHVEVNMDCSVPKTEGVFSLVIVVDRKPHLGPSGGLPTFDELFGARIHSHGNLAIVPSLKDRFYIRHVLKRVISVEKDTMMVDIEGVVALSSRRFNCWAGFKDLDIESRKGVYDNINKNALLVYYCWMSDTVSKASTFVSFDLDYIG |
NCBI Accession | NP_047242.1 |
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Location | 1367-2248 |
Gene Name | bl1 |
Protein Name | BL1 protein |
Coding Region | ATGAATTCTCAGTTAGTTAATCCTCCTCATGCTTTCAATTACATAGAGTCTCAACGGGATGAATATCAGCTTTCGCATGACCTAACTGAGATAATACTGCAATTTCCGTCGACGGCGGCGCAGTTAACGGCGAGGCTCAGTCGCAGCTGTATGAAGATAGACCACTGCGTAATTGAGTACAGGCAACAGGTACCCATCAACGCCACCGGGTCTGTAATAGTGGAGATTCATGATAAGAGGATGACAGACAACGAATCTCTGCAGGCGTCATGGACGTTCCCGTTAAGATGCAACATAGATCTCCACTATTTCTCAGCTTCCTTTTTCTCCCTAAAAGATCCTATCCCATGGAAACTCTATTACAGAGTTTCCGACACGAACGTTCATCAACGGACACACTTTGCCAAGTTCAAAGGGAAGCTGAAACTGTCGACGGCGAAACATTCCGTAGACATTCCGTTCAGAGCACCAACGGTCAAGATCCTGTCCAAACAGTTCACAGATAAGGACGTGGATTTCTCGCACGTCGACTACGGGAGATGGGAGAGGAAGCCCATTAGATGCGCATCAATGTCCAGAGTTGGGCTCAGAGGCCCAATTGAAATAAGGCCTGGTGAATCATGGGCTTCCAGGAGTACAATAGGAGTGGGTCAATCAGAGGGCGAGTCAGAGATAGAGAACGAGCTACATACGTATCGAGATTTGCAAAGACTAGGAGCCAGCGTCCTAGATCCAGGAGAGTCAGCATCTATAGTTGGTGCTAACATGGCCCAATCGAACATAACCATGTCCGTAGCCCAGTTAAATGAACTTGTAAGGACAACTGTCCAAGAATGTATAAAGAGTAATTGTAATAGTTCTCAGCCAAAAAATTTTAAATAA |
Protein Sequence | MNSQLVNPPHAFNYIESQRDEYQLSHDLTEIILQFPSTAAQLTARLSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPLRCNIDLHYFSASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVDYGRWERKPIRCASMSRVGLRGPIEIRPGESWASRSTIGVGQSEGESEIENELHTYRDLQRLGASVLDPGESASIVGANMAQSNITMSVAQLNELVRTTVQECIKSNCNSSQPKNFK |
1 |
Potato yellow mosaic virus: a synonym of tomato yellow mosaic virus. Morales FJ, et al. Arch Virol. 2001;146(11):2249-53. doi: 10.1007/s007050170035. PMID: 11765926 |
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2 |
Potato aucuba mosaic virus in Potato in New York State. Susaimuthu J, et al. Plant Dis. 2007 Sep;91(9):1202. doi: 10.1094/PDIS-91-9-1202A. PMID: 30780673 |
3 |
Evidence of occurring alfalfa mosaic virus in potato plants in Assam, India. Halabi MH, et al. Virusdisease. 2019 Dec;30(4):571-573. doi: 10.1007/s13337-019-00560-3. Epub 2019 Dec 9. PMID: 31897419 |
4 |
Characterization of potato yellow mosaic virus as a geminivirus with a bipartite genome. Roberts EJ, et al. Intervirology. 1988;29(3):162-9. doi: 10.1159/000150042. PMID: 3182230 |
5 |
Contribution of Noncolonizing Aphids to Potato Virus Y Prevalence in Potato in Idaho. Mondal S, et al. Environ Entomol. 2016 Dec;45(6):1445-1462. doi: 10.1093/ee/nvw131. Epub 2016 Sep 30. PMID: 28028092 |
6 |
Jung HW, et al. Plant Dis. 2002 Feb;86(2):112-117. doi: 10.1094/PDIS.2002.86.2.112. PMID: 30823306 |
7 |
Li F, et al. New Phytol. 2015 Oct;208(2):555-69. doi: 10.1111/nph.13473. Epub 2015 May 22. PMID: 26010321 |
8 |
First Report of Recombinant Potato virus Y Strains in Potato in Jalisco, Mexico. Quintero-Ferrer A, et al. Plant Dis. 2013 Mar;97(3):430. doi: 10.1094/PDIS-10-12-0919-PDN. PMID: 30722403 |
9 |
Global Plant Virus Disease Pandemics and Epidemics. Jones RAC. Plants (Basel). 2021 Jan 25;10(2):233. doi: 10.3390/plants10020233. PMID: 33504044 |
10 |
The infectivity of dimeric potato yellow mosaic geminivirus clones in different hosts. Buragohain AK, et al. J Gen Virol. 1994 Oct;75 ( Pt 10):2857-61. doi: 10.1099/0022-1317-75-10-2857. PMID: 7931179 |