Polygala garcinii virus
Basic Information
Genomic Organization
JBrowse
Genome
TAATATTACCGGATGGCCGCCGTTTGTCCTATGTTTGGCGGGTGATTTGACAGTTTGTCTCTTTTGCTTTGTTTGTCCAATGCGATGAATGCATTGGGGGTTATTTATAACCGTGTGGGCCCGTTATATACTTAGGTATGAAGTAGTTATTTTGAATTTGAAATGTGGGATCCATTATTGCACGATTTTCCGGAAAGCCTCCATGGCTTTCGGTGTATGCTTGCTGTAAAGTACCTTCTTTGTGTCTCGTCTCTGTACCCTGTACAGTCTGTGGGGTTCGAGTTGCTGAGGGATTGCATTAGTGCGGTGCGCACTCGTTCGTATGACGAAGGGTCGTGTAAGTATAGTGCCCTTTGTGCGAAGGTTAGGTCCACGTCTGAAGGGGAACTCACCCAGACGAGGACCCCGCTATGTTGTTGCCCGCACTGCCCCCGTCATATCGGCCGTGACCGAGTGGAAACGGAGACCAAGGAACCGGAACCCTAAGTCGTCTAAGAAGGATGTTGTTCCTTTCGGCTGCGAGGGTCCTTGTAAGGTTGAATCGTTTTCTGATAGGTATGAAGTGAAGCATACCGGTACTGTTTGTTGTTTGTCTCAGATTTCCCGTGGGAATGGTTTGAAGCAACGCATTGGGAAGAGGATTACTATTAAAAGTATTTACTTACTTGGTAAGGTGTGGTTGGACGGTAGTAACCGCATTTCCAATCATACTAATGTCTGTATATTTTTTGTCGTTAGGGATAGGCGTCCTTCTGTTACTCCTATCAATTTTGGTAGTTTATTTGATATGTTTGACGGTGAACCTGCTACGGCTTCTGTGAAGTCGGATCACCGTGATAGGTTTCAGGTGTTGTATCGTTTTCAGGTTTCTGTGTCTGGAGGGCAGTATTCTAGTCGTGATCAGACAGTTTTCCAGAAGTTTGTGAACCTCAATCATAGGGTTGTTTTTGATAATCAAGATGATGGTGTTTACGGGAATCATGATCAGAATGCGCTTCTTGTTTACATGGCTTGTTGCCATTCTACTAATTGGCTGTATTCTAGTATGAAAGCTAAAGTGTATTTCTATGATTCTGCAATGAATTAATAAAGTTTATATTTTATATCATGTTCTTCGTTTACAGATATGGTGTTCTCTAACACCTCGTACAGCACATGATCCACAGCTCTAATAACCGTGTTTAAACTGTAAACTCCTAATGAATCTAAAAACTTAAGAACTTGGTATCTAAAGACCCTCAAGAAACGCGATGTCTGAGGCTGTAGGCGGGTCCAGGTGCGAAAATTGAGGTAGCACTTGTGCATCCCCAACGCTCTCCTCAGGTTGTGGTTGAACCTGATTTGGAGGTGTATGATATCCGTGTCCGACAGGGCTGGTCTGATGTCGTGTTGGGTTATCTTGAAATAGAGGGCGTTTTGTACCGTCCAGGTAAAAACGCCATTCCTTGCGAGAGGTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTCGATGTGGACGTATATTGTGCAACCGCAGTCTAGATCAATTCGCTTCCTGCGAATGATTTTCTTCTTCTTCGCTGCCTTGTGCGCTATCTTGACGTCCTGTGTACAATGGTTGGGATAGGAAGACGAAGATTGCATTCTTCAGTGCCCAATTTTTGAGTGTGGAGTTCTTCTCCTCATCGAGGTACTCTTTATAGCTTGAAGTTGGGCCTGGATTGCACAGGAATATGGTCGGTATGCCACCCTTGACCATTGTGGGCTTGCCGTATTTGGTGTTTGATTTCCAGTTGGATTGGCAGCCCATGAATTCCTTGAAGTGCTTGAGATAATGTGGATCTACGTCATCAATGACGTTGTACCATGCGTCGTTGGAGAAGTCTCTCGGAGAGAGATCAATGTGACCGCAGATGTAATTATGCGGTCCTAATGACCTTGCCCAGAGAGTTTTACCCGTACGACTATCACCTTCAACCACTATGCTTATCGGTCTAATTGGCCGCGCAGCGGAATGAACAACGTTATCGCACGCCCATTCCTCCATCTCTTCTGGTACCCTATCAAACGATGAACAAGTAAATGGACATTGAAATTGTGGTATGGGTGGGGGAAATAACCTGTCTAAATTGGCTGTGATGTTGTGGTACTGTAATAGGAATGACTTGGGATCTTTTTCTTTTAGTACAGTGAGGGCCTGTGATTTGTCGCCTGTGTTGATTGCTTCGGCGTACGTGTCGGCTGCCGTGCTGCCGCCTCGTCTAGTAGATCTTCCATCGATCTGGAAAACTCCATGATCAATGACGTCCCCGTCTTTCTCCATGTAGGTTTTGACATCTGAGCTTGATTTAGCTGCCTGAATGTTTGGATGGTAATGTGTTGTCCGCACTGGAGAGGTGAGGTCGAAGAATCGGTTGTTGGTGCAGACGAATTTGCCTTCGAATTGGATGAGGACGTGGAGGTGTGGTTGCCCATCTTCGTGCAGTTCTCTGCATATGCGTATGAATTTTTTGTTTGTTGGTGTTGTGGGGTTTTGCAGTTGGGCGAGGGTTTCTTCCTTGGTTAGTGTACATTGTGGGTATGTTAGGAAGTAATTCCTTGCTGATATGCGGAATCGTCTGGTTGGTGGCATTTTCGCAATTTTGGGAGTGTCACCGATTCGTTTTGGGTGTCACCAATTGCCTTCTATCCATATGGTTTGGTGACTGGTGTACAATATATAGAAGTACTAGTTCTATAATAGTACCTATGCGGATGGGTGCCTTCGGATTTGGATCTGCCATGATACACGTGGCGGCCATCCGT
Gene Information
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NCBI Accession
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AUT11869.1
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Location
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163-486 |
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Protein Name
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movement protein |
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Coding Region
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ATGTGGGATCCATTATTGCACGATTTTCCGGAAAGCCTCCATGGCTTTCGGTGTATGCTTGCTGTAAAGTACCTTCTTTGTGTCTCGTCTCTGTACCCTGTACAGTCTGTGGGGTTCGAGTTGCTGAGGGATTGCATTAGTGCGGTGCGCACTCGTTCGTATGACGAAGGGTCGTGTAAGTATAGTGCCCTTTGTGCGAAGGTTAGGTCCACGTCTGAAGGGGAACTCACCCAGACGAGGACCCCGCTATGTTGTTGCCCGCACTGCCCCCGTCATATCGGCCGTGACCGAGTGGAAACGGAGACCAAGGAACCGGAACCCTAA |
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Protein Sequence
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MWDPLLHDFPESLHGFRCMLAVKYLLCVSSLYPVQSVGFELLRDCISAVRTRSYDEGSCKYSALCAKVRSTSEGELTQTRTPLCCCPHCPRHIGRDRVETETKEPEP |
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NCBI Accession
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AUT11870.1
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Location
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323-1087 |
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Protein Name
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capsid protein |
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Coding Region
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ATGACGAAGGGTCGTGTAAGTATAGTGCCCTTTGTGCGAAGGTTAGGTCCACGTCTGAAGGGGAACTCACCCAGACGAGGACCCCGCTATGTTGTTGCCCGCACTGCCCCCGTCATATCGGCCGTGACCGAGTGGAAACGGAGACCAAGGAACCGGAACCCTAAGTCGTCTAAGAAGGATGTTGTTCCTTTCGGCTGCGAGGGTCCTTGTAAGGTTGAATCGTTTTCTGATAGGTATGAAGTGAAGCATACCGGTACTGTTTGTTGTTTGTCTCAGATTTCCCGTGGGAATGGTTTGAAGCAACGCATTGGGAAGAGGATTACTATTAAAAGTATTTACTTACTTGGTAAGGTGTGGTTGGACGGTAGTAACCGCATTTCCAATCATACTAATGTCTGTATATTTTTTGTCGTTAGGGATAGGCGTCCTTCTGTTACTCCTATCAATTTTGGTAGTTTATTTGATATGTTTGACGGTGAACCTGCTACGGCTTCTGTGAAGTCGGATCACCGTGATAGGTTTCAGGTGTTGTATCGTTTTCAGGTTTCTGTGTCTGGAGGGCAGTATTCTAGTCGTGATCAGACAGTTTTCCAGAAGTTTGTGAACCTCAATCATAGGGTTGTTTTTGATAATCAAGATGATGGTGTTTACGGGAATCATGATCAGAATGCGCTTCTTGTTTACATGGCTTGTTGCCATTCTACTAATTGGCTGTATTCTAGTATGAAAGCTAAAGTGTATTTCTATGATTCTGCAATGAATTAA |
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Protein Sequence
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MTKGRVSIVPFVRRLGPRLKGNSPRRGPRYVVARTAPVISAVTEWKRRPRNRNPKSSKKDVVPFGCEGPCKVESFSDRYEVKHTGTVCCLSQISRGNGLKQRIGKRITIKSIYLLGKVWLDGSNRISNHTNVCIFFVVRDRRPSVTPINFGSLFDMFDGEPATASVKSDHRDRFQVLYRFQVSVSGGQYSSRDQTVFQKFVNLNHRVVFDNQDDGVYGNHDQNALLVYMACCHSTNWLYSSMKAKVYFYDSAMN |
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NCBI Accession
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AUT11872.1
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Location
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1084-1488 |
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Protein Name
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REn |
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Coding Region
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ATGGATTCACGCACAGGGGAACCCATCACTGCACCTCTCGCAAGGAATGGCGTTTTTACCTGGACGGTACAAAACGCCCTCTATTTCAAGATAACCCAACACGACATCAGACCAGCCCTGTCGGACACGGATATCATACACCTCCAAATCAGGTTCAACCACAACCTGAGGAGAGCGTTGGGGATGCACAAGTGCTACCTCAATTTTCGCACCTGGACCCGCCTACAGCCTCAGACATCGCGTTTCTTGAGGGTCTTTAGATACCAAGTTCTTAAGTTTTTAGATTCATTAGGAGTTTACAGTTTAAACACGGTTATTAGAGCTGTGGATCATGTGCTGTACGAGGTGTTAGAGAACACCATATCTGTAAACGAAGAACATGATATAAAATATAAACTTTATTAA |
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Protein Sequence
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MDSRTGEPITAPLARNGVFTWTVQNALYFKITQHDIRPALSDTDIIHLQIRFNHNLRRALGMHKCYLNFRTWTRLQPQTSRFLRVFRYQVLKFLDSLGVYSLNTVIRAVDHVLYEVLENTISVNEEHDIKYKLY |
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NCBI Accession
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AUT11873.1
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Location
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1229-1636 |
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Protein Name
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TrAP |
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Coding Region
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ATGCAATCTTCGTCTTCCTATCCCAACCATTGTACACAGGACGTCAAGATAGCGCACAAGGCAGCGAAGAAGAAGAAAATCATTCGCAGGAAGCGAATTGATCTAGACTGCGGTTGCACAATATACGTCCACATCGACTGCCACAACCATGGATTCACGCACAGGGGAACCCATCACTGCACCTCTCGCAAGGAATGGCGTTTTTACCTGGACGGTACAAAACGCCCTCTATTTCAAGATAACCCAACACGACATCAGACCAGCCCTGTCGGACACGGATATCATACACCTCCAAATCAGGTTCAACCACAACCTGAGGAGAGCGTTGGGGATGCACAAGTGCTACCTCAATTTTCGCACCTGGACCCGCCTACAGCCTCAGACATCGCGTTTCTTGAGGGTCTTTAG |
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Protein Sequence
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MQSSSSYPNHCTQDVKIAHKAAKKKKIIRRKRIDLDCGCTIYVHIDCHNHGFTHRGTHHCTSRKEWRFYLDGTKRPLFQDNPTRHQTSPVGHGYHTPPNQVQPQPEESVGDAQVLPQFSHLDPPTASDIAFLEGL |
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NCBI Accession
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AUT11871.1
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Location
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1536-2624 |
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Protein Name
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replication associated protein |
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Coding Region
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ATGCCACCAACCAGACGATTCCGCATATCAGCAAGGAATTACTTCCTAACATACCCACAATGTACACTAACCAAGGAAGAAACCCTCGCCCAACTGCAAAACCCCACAACACCAACAAACAAAAAATTCATACGCATATGCAGAGAACTGCACGAAGATGGGCAACCACACCTCCACGTCCTCATCCAATTCGAAGGCAAATTCGTCTGCACCAACAACCGATTCTTCGACCTCACCTCTCCAGTGCGGACAACACATTACCATCCAAACATTCAGGCAGCTAAATCAAGCTCAGATGTCAAAACCTACATGGAGAAAGACGGGGACGTCATTGATCATGGAGTTTTCCAGATCGATGGAAGATCTACTAGACGAGGCGGCAGCACGGCAGCCGACACGTACGCCGAAGCAATCAACACAGGCGACAAATCACAGGCCCTCACTGTACTAAAAGAAAAAGATCCCAAGTCATTCCTATTACAGTACCACAACATCACAGCCAATTTAGACAGGTTATTTCCCCCACCCATACCACAATTTCAATGTCCATTTACTTGTTCATCGTTTGATAGGGTACCAGAAGAGATGGAGGAATGGGCGTGCGATAACGTTGTTCATTCCGCTGCGCGGCCAATTAGACCGATAAGCATAGTGGTTGAAGGTGATAGTCGTACGGGTAAAACTCTCTGGGCAAGGTCATTAGGACCGCATAATTACATCTGCGGTCACATTGATCTCTCTCCGAGAGACTTCTCCAACGACGCATGGTACAACGTCATTGATGACGTAGATCCACATTATCTCAAGCACTTCAAGGAATTCATGGGCTGCCAATCCAACTGGAAATCAAACACCAAATACGGCAAGCCCACAATGGTCAAGGGTGGCATACCGACCATATTCCTGTGCAATCCAGGCCCAACTTCAAGCTATAAAGAGTACCTCGATGAGGAGAAGAACTCCACACTCAAAAATTGGGCACTGAAGAATGCAATCTTCGTCTTCCTATCCCAACCATTGTACACAGGACGTCAAGATAGCGCACAAGGCAGCGAAGAAGAAGAAAATCATTCGCAGGAAGCGAATTGA |
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Protein Sequence
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MPPTRRFRISARNYFLTYPQCTLTKEETLAQLQNPTTPTNKKFIRICRELHEDGQPHLHVLIQFEGKFVCTNNRFFDLTSPVRTTHYHPNIQAAKSSSDVKTYMEKDGDVIDHGVFQIDGRSTRRGGSTAADTYAEAINTGDKSQALTVLKEKDPKSFLLQYHNITANLDRLFPPPIPQFQCPFTCSSFDRVPEEMEEWACDNVVHSAARPIRPISIVVEGDSRTGKTLWARSLGPHNYICGHIDLSPRDFSNDAWYNVIDDVDPHYLKHFKEFMGCQSNWKSNTKYGKPTMVKGGIPTIFLCNPGPTSSYKEYLDEEKNSTLKNWALKNAIFVFLSQPLYTGRQDSAQGSEEEENHSQEAN |