Pepper yellow vein Mali virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000840925.1 |
| Isolate |
Mali |
| Release date |
2015/2/12 |
| Submitter |
Zhou,Y.C., Noussourou,M., Kon,T., Rojas,M.R., Jiang,H., Chen,L.F., Gamby,K., Foster,R., Gilbertson,R.L., Zhou,Y., Chen,L. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCCCGAAAAAGATATGGGCCCCACGCACTAATATGTGTCGACCAATCATATCGCAGCCTGAAAGGCTAGATATTTGTGTTTTGTCTTTATATACTTGGGCACCAAGTTTGGGCCTTGTCCATAATGTGGGATCCACTTTTGAACGAGTTTCCCGAGTCCGTTCACGGATTTCGTTGTATGCTCGCCATTAAATATTTGCAGGCCGTGGAGGAAACTTACGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATTAGTGTTATTAGGGCTCGAGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACACCAGCCGTGCTGCTGTCTCCATTGCCCAAGGCATAAACAGGCGTCGATCATGGACCTACCGGCCCATGTATCGAAAACCCAGGATGTACAGAATGTTCAGAAGCCCTGATGTCCCTCGTGGTTGTGAGGGTCCGTGTAAGGTTCAGTCGTACGAACAGAGGGATGATGTTAAGCACACTGGTATTGTTCGCTGCGTTAGTGATGTCACACGTGGCCCGGGCATTACTCATCGTGTAGGAAAGAGATTTTGTATTAAGTCTATATATATTCTGGGTAAGATCTGGATGGATGAAAATATCAAGAAGCAGAATCACACCAACCAGGTTATGTTTTTTTTAGTTCGTGATAGAAGGCCCTATGGAACCAGCCCACAGGATTTTGGGCAGGTTTTTAACATGTTCGATAATGAGCCCAGTACTGCTACGGTGAAGAATGATTTGCGTGATCGTTATCAAGTCCTCAGGAAATTCCATGCTACGGTAGTTGGTGGACCCTCTGGGATGAAAGAGCAGGCTTTAGTCAAGAGGTTTTTTAGGGTTAACACGCACGTCGTGTACAATCATCAGGAAGCAGCTAAATATGAGAATCATACTGAGAATGCTTTGTTGCTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATACGCATCTATTTATATGATGCCGTTACGAATTAATAAAGATTGAATTTTATTTCATGAGTTTCCATAACGGAAATCGTATTTACAAGTACAACATATAACACATGATCAACTGCTCTAATTACATTATTGATAGAAATTACACCTAAATTATTCAAATACTTCAAAACTTGGAACCTAAATACCCTTAAGAAAAGACCAGTCTGAGGCCGTAAGGTCGTCCAGACCTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTGCCCTCCTGAGGTTGTGATTGAATCGTATTTGGAGTGTGAGGATGTCTTGGTTCATGTTGAATGGCCTGATGTCGTGGTTTGTTATCGTGAAATAGAGGGGATTGTTTATCTCCCATATAAAAACGCCATTCTTTGCTTGAAGAGCAGTGATGTGTTCCCCTGTGCGTGAATCCATGGTTGATGCAGTCGATGTGGAGGTAGTATGAACAGCCGCAGTCGAGGTCTATTCGCTTACGGCGGATGGCTTTAGTCTTGGCTCTGCGGTGGATGACCTTGATTGGTACTTGAGTAGAGTGGCCTGTCGAGGGTGACGAAGGTTGCATTCTTTAGTGTCCAGCTCTTGAGTGCGTAATTCTTCGCCTCTTCTAGGAATTCTTTATATGAGGATGTTGGGCCTGGATTGCAGAGGAAGATAGAGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCAAAGAATTCTTTCCAGTGCTTTAGATAGTGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTAGAATAAACCTTTGGACTTAAGTCTAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAACAGTTTTGCCGGTACGACTATCGCCCTCTACTACAATACTATTCGGCCTCCACGGCCGCGCAGCGGCACCCATGACATTCTCAGACACGCACTCTTCAAGTTCTTCTGGAACTTGAGTAAAAGAAGACGAAAGAAAAGGAGAAACATAAGGAGCTGGGGGCTCTTGAAAAATCCTATCTAAATTAGTTTTTAAATTATGATATTGAAAAATAAATTCTTTAGGGAGTTTCTCCCTAATAATAGCCATAGCGGCTTCAGCGGAATCTGCATTTAAGGCCTCTGCTGCAGCGTCGTTAGCATTTCGACAGCCTCCCCTAGCACTTCTGCCGTCGACCTGGAATACCCCCCATTCAAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCCTCGAACTGCATAAGCACGTGGAGATGAGGTTCCCCATTTGTGTGCAACTCTCTGCAGACTTTGATGAATTTTTTATTTGTTGGGGTTGACAGATTTAGAAGTTGCTCTAACGCTTCTTCTTTAGTGAGGGAGCATTTTGGGAAAGTGAGGAAATAATTTTTGGAATTTATTTTAAAACGCTTTGGAGGAGCCATTTGGTCAATGTACCCCAATTGACCGCTCTTGGCATTTGGTGCCTACAATCGGTGTAATGGGGTACAATATATACCTGTACCCCTAATGGCAATATGGTAATTTGGTAAAGAGCTTTTTACTTTAATTCGAAATTGGAATTTCGAATTTTTTTTAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_958310.1
|
|
Location
|
139-489 |
|
Gene Name
|
V1 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCACTTTTGAACGAGTTTCCCGAGTCCGTTCACGGATTTCGTTGTATGCTCGCCATTAAATATTTGCAGGCCGTGGAGGAAACTTACGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATTAGTGTTATTAGGGCTCGAGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACACCAGCCGTGCTGCTGTCTCCATTGCCCAAGGCATAAACAGGCGTCGATCATGGACCTACCGGCCCATGTATCGAAAACCCAGGATGTACAGAATGTTCAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIHQPCCCLHCPRHKQASIMDLPAHVSKTQDVQNVQKP |
|
NCBI Accession
|
NP_958311.1
|
|
Location
|
299-1075 |
|
Gene Name
|
V2 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACACCAGCCGTGCTGCTGTCTCCATTGCCCAAGGCATAAACAGGCGTCGATCATGGACCTACCGGCCCATGTATCGAAAACCCAGGATGTACAGAATGTTCAGAAGCCCTGATGTCCCTCGTGGTTGTGAGGGTCCGTGTAAGGTTCAGTCGTACGAACAGAGGGATGATGTTAAGCACACTGGTATTGTTCGCTGCGTTAGTGATGTCACACGTGGCCCGGGCATTACTCATCGTGTAGGAAAGAGATTTTGTATTAAGTCTATATATATTCTGGGTAAGATCTGGATGGATGAAAATATCAAGAAGCAGAATCACACCAACCAGGTTATGTTTTTTTTAGTTCGTGATAGAAGGCCCTATGGAACCAGCCCACAGGATTTTGGGCAGGTTTTTAACATGTTCGATAATGAGCCCAGTACTGCTACGGTGAAGAATGATTTGCGTGATCGTTATCAAGTCCTCAGGAAATTCCATGCTACGGTAGTTGGTGGACCCTCTGGGATGAAAGAGCAGGCTTTAGTCAAGAGGTTTTTTAGGGTTAACACGCACGTCGTGTACAATCATCAGGAAGCAGCTAAATATGAGAATCATACTGAGAATGCTTTGTTGCTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATACGCATCTATTTATATGATGCCGTTACGAATTAA |
|
Protein Sequence
|
MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVSIAQGINRRRSWTYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPQDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYLYDAVTN |
|
NCBI Accession
|
NP_958312.1
|
|
Location
|
1072-1476 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACACATCACTGCTCTTCAAGCAAAGAATGGCGTTTTTATATGGGAGATAAACAATCCCCTCTATTTCACGATAACAAACCACGACATCAGGCCATTCAACATGAACCAAGACATCCTCACACTCCAAATACGATTCAATCACAACCTCAGGAGGGCACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCTTTTCTTAAGGGTATTTAGGTTCCAAGTTTTGAAGTATTTGAATAATTTAGGTGTAATTTCTATCAATAATGTAATTAGAGCAGTTGATCATGTGTTATATGTTGTACTTGTAAATACGATTTCCGTTATGGAAACTCATGAAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDSRTGEHITALQAKNGVFIWEINNPLYFTITNHDIRPFNMNQDILTLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFRFQVLKYLNNLGVISINNVIRAVDHVLYVVLVNTISVMETHEIKFNLY |
|
NCBI Accession
|
NP_958313.1
|
|
Location
|
1217-1624 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCAACCTTCGTCACCCTCGACAGGCCACTCTACTCAAGTACCAATCAAGGTCATCCACCGCAGAGCCAAGACTAAAGCCATCCGCCGTAAGCGAATAGACCTCGACTGCGGCTGTTCATACTACCTCCACATCGACTGCATCAACCATGGATTCACGCACAGGGGAACACATCACTGCTCTTCAAGCAAAGAATGGCGTTTTTATATGGGAGATAAACAATCCCCTCTATTTCACGATAACAAACCACGACATCAGGCCATTCAACATGAACCAAGACATCCTCACACTCCAAATACGATTCAATCACAACCTCAGGAGGGCACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCTTTTCTTAAGGGTATTTAG |
|
Protein Sequence
|
MQPSSPSTGHSTQVPIKVIHRRAKTKAIRRKRIDLDCGCSYYLHIDCINHGFTHRGTHHCSSSKEWRFYMGDKQSPLFHDNKPRHQAIQHEPRHPHTPNTIQSQPQEGTGDSQMFSQLQGLDDLTASDWSFLKGI |
|
NCBI Accession
|
NP_958314.1
|
|
Location
|
1548-2612 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication associated protein C1 |
|
Coding Region
|
ATGGCTCCTCCAAAGCGTTTTAAAATAAATTCCAAAAATTATTTCCTCACTTTCCCAAAATGCTCCCTCACTAAAGAAGAAGCGTTAGAGCAACTTCTAAATCTGTCAACCCCAACAAATAAAAAATTCATCAAAGTCTGCAGAGAGTTGCACACAAATGGGGAACCTCATCTCCACGTGCTTATGCAGTTCGAGGGGAAATACCAGTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTTGAATGGGGGGTATTCCAGGTCGACGGCAGAAGTGCTAGGGGAGGCTGTCGAAATGCTAACGACGCTGCAGCAGAGGCCTTAAATGCAGATTCCGCTGAAGCCGCTATGGCTATTATTAGGGAGAAACTCCCTAAAGAATTTATTTTTCAATATCATAATTTAAAAACTAATTTAGATAGGATTTTTCAAGAGCCCCCAGCTCCTTATGTTTCTCCTTTTCTTTCGTCTTCTTTTACTCAAGTTCCAGAAGAACTTGAAGAGTGCGTGTCTGAGAATGTCATGGGTGCCGCTGCGCGGCCGTGGAGGCCGAATAGTATTGTAGTAGAGGGCGATAGTCGTACCGGCAAAACTGTTTGGGCTAGGTCATTAGGGCCACATAATTACTTATGTGGTCATTTAGACTTAAGTCCAAAGGTTTATTCTAATGATGCTTGGTATAACGTCATTGATGACGTCGACCCGCACTATCTAAAGCACTGGAAAGAATTCTTTGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAATTCAAATTAAAGGCGGAATTCCCTCTATCTTCCTCTGCAATCCAGGCCCAACATCCTCATATAAAGAATTCCTAGAAGAGGCGAAGAATTACGCACTCAAGAGCTGGACACTAAAGAATGCAACCTTCGTCACCCTCGACAGGCCACTCTACTCAAGTACCAATCAAGGTCATCCACCGCAGAGCCAAGACTAA |
|
Protein Sequence
|
MAPPKRFKINSKNYFLTFPKCSLTKEEALEQLLNLSTPTNKKFIKVCRELHTNGEPHLHVLMQFEGKYQCTNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYIDKDGDTLEWGVFQVDGRSARGGCRNANDAAAEALNADSAEAAMAIIREKLPKEFIFQYHNLKTNLDRIFQEPPAPYVSPFLSSSFTQVPEELEECVSENVMGAAARPWRPNSIVVEGDSRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDWQSNTKYGKPIQIKGGIPSIFLCNPGPTSSYKEFLEEAKNYALKSWTLKNATFVTLDRPLYSSTNQGHPPQSQD |
|
NCBI Accession
|
NP_958315.1
|
|
Location
|
2198-2455 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGGAACCTCATCTCCACGTGCTTATGCAGTTCGAGGGGAAATACCAGTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTTGAATGGGGGGTATTCCAGGTCGACGGCAGAAGTGCTAGGGGAGGCTGTCGAAATGCTAACGACGCTGCAGCAGAGGCCTTAA |
|
Protein Sequence
|
MGNLISTCLCSSRGNTSARITDSSTWYPQPGQHISIRTFRELNQAPTSSPTSTRTETPLNGGYSRSTAEVLGEAVEMLTTLQQRP |