Pepper yellow vein Mali virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000840925.1
Isolate Mali
Release date 2015/2/12
Submitter Zhou,Y.C., Noussourou,M., Kon,T., Rojas,M.R., Jiang,H., Chen,L.F., Gamby,K., Foster,R., Gilbertson,R.L., Zhou,Y., Chen,L.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_005347
ACCGGATGGCCGCGCCCCCGAAAAAGATATGGGCCCCACGCACTAATATGTGTCGACCAATCATATCGCAGCCTGAAAGGCTAGATATTTGTGTTTTGTCTTTATATACTTGGGCACCAAGTTTGGGCCTTGTCCATAATGTGGGATCCACTTTTGAACGAGTTTCCCGAGTCCGTTCACGGATTTCGTTGTATGCTCGCCATTAAATATTTGCAGGCCGTGGAGGAAACTTACGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATTAGTGTTATTAGGGCTCGAGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACACCAGCCGTGCTGCTGTCTCCATTGCCCAAGGCATAAACAGGCGTCGATCATGGACCTACCGGCCCATGTATCGAAAACCCAGGATGTACAGAATGTTCAGAAGCCCTGATGTCCCTCGTGGTTGTGAGGGTCCGTGTAAGGTTCAGTCGTACGAACAGAGGGATGATGTTAAGCACACTGGTATTGTTCGCTGCGTTAGTGATGTCACACGTGGCCCGGGCATTACTCATCGTGTAGGAAAGAGATTTTGTATTAAGTCTATATATATTCTGGGTAAGATCTGGATGGATGAAAATATCAAGAAGCAGAATCACACCAACCAGGTTATGTTTTTTTTAGTTCGTGATAGAAGGCCCTATGGAACCAGCCCACAGGATTTTGGGCAGGTTTTTAACATGTTCGATAATGAGCCCAGTACTGCTACGGTGAAGAATGATTTGCGTGATCGTTATCAAGTCCTCAGGAAATTCCATGCTACGGTAGTTGGTGGACCCTCTGGGATGAAAGAGCAGGCTTTAGTCAAGAGGTTTTTTAGGGTTAACACGCACGTCGTGTACAATCATCAGGAAGCAGCTAAATATGAGAATCATACTGAGAATGCTTTGTTGCTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATACGCATCTATTTATATGATGCCGTTACGAATTAATAAAGATTGAATTTTATTTCATGAGTTTCCATAACGGAAATCGTATTTACAAGTACAACATATAACACATGATCAACTGCTCTAATTACATTATTGATAGAAATTACACCTAAATTATTCAAATACTTCAAAACTTGGAACCTAAATACCCTTAAGAAAAGACCAGTCTGAGGCCGTAAGGTCGTCCAGACCTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTGCCCTCCTGAGGTTGTGATTGAATCGTATTTGGAGTGTGAGGATGTCTTGGTTCATGTTGAATGGCCTGATGTCGTGGTTTGTTATCGTGAAATAGAGGGGATTGTTTATCTCCCATATAAAAACGCCATTCTTTGCTTGAAGAGCAGTGATGTGTTCCCCTGTGCGTGAATCCATGGTTGATGCAGTCGATGTGGAGGTAGTATGAACAGCCGCAGTCGAGGTCTATTCGCTTACGGCGGATGGCTTTAGTCTTGGCTCTGCGGTGGATGACCTTGATTGGTACTTGAGTAGAGTGGCCTGTCGAGGGTGACGAAGGTTGCATTCTTTAGTGTCCAGCTCTTGAGTGCGTAATTCTTCGCCTCTTCTAGGAATTCTTTATATGAGGATGTTGGGCCTGGATTGCAGAGGAAGATAGAGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCAAAGAATTCTTTCCAGTGCTTTAGATAGTGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTAGAATAAACCTTTGGACTTAAGTCTAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAACAGTTTTGCCGGTACGACTATCGCCCTCTACTACAATACTATTCGGCCTCCACGGCCGCGCAGCGGCACCCATGACATTCTCAGACACGCACTCTTCAAGTTCTTCTGGAACTTGAGTAAAAGAAGACGAAAGAAAAGGAGAAACATAAGGAGCTGGGGGCTCTTGAAAAATCCTATCTAAATTAGTTTTTAAATTATGATATTGAAAAATAAATTCTTTAGGGAGTTTCTCCCTAATAATAGCCATAGCGGCTTCAGCGGAATCTGCATTTAAGGCCTCTGCTGCAGCGTCGTTAGCATTTCGACAGCCTCCCCTAGCACTTCTGCCGTCGACCTGGAATACCCCCCATTCAAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCCTCGAACTGCATAAGCACGTGGAGATGAGGTTCCCCATTTGTGTGCAACTCTCTGCAGACTTTGATGAATTTTTTATTTGTTGGGGTTGACAGATTTAGAAGTTGCTCTAACGCTTCTTCTTTAGTGAGGGAGCATTTTGGGAAAGTGAGGAAATAATTTTTGGAATTTATTTTAAAACGCTTTGGAGGAGCCATTTGGTCAATGTACCCCAATTGACCGCTCTTGGCATTTGGTGCCTACAATCGGTGTAATGGGGTACAATATATACCTGTACCCCTAATGGCAATATGGTAATTTGGTAAAGAGCTTTTTACTTTAATTCGAAATTGGAATTTCGAATTTTTTTTAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_958310.1
Location 139-489
Gene Name V1
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTTTTGAACGAGTTTCCCGAGTCCGTTCACGGATTTCGTTGTATGCTCGCCATTAAATATTTGCAGGCCGTGGAGGAAACTTACGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATTAGTGTTATTAGGGCTCGAGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACACCAGCCGTGCTGCTGTCTCCATTGCCCAAGGCATAAACAGGCGTCGATCATGGACCTACCGGCCCATGTATCGAAAACCCAGGATGTACAGAATGTTCAGAAGCCCTGA
Protein Sequence MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIHQPCCCLHCPRHKQASIMDLPAHVSKTQDVQNVQKP

NCBI Accession NP_958311.1
Location 299-1075
Gene Name V2
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACACCAGCCGTGCTGCTGTCTCCATTGCCCAAGGCATAAACAGGCGTCGATCATGGACCTACCGGCCCATGTATCGAAAACCCAGGATGTACAGAATGTTCAGAAGCCCTGATGTCCCTCGTGGTTGTGAGGGTCCGTGTAAGGTTCAGTCGTACGAACAGAGGGATGATGTTAAGCACACTGGTATTGTTCGCTGCGTTAGTGATGTCACACGTGGCCCGGGCATTACTCATCGTGTAGGAAAGAGATTTTGTATTAAGTCTATATATATTCTGGGTAAGATCTGGATGGATGAAAATATCAAGAAGCAGAATCACACCAACCAGGTTATGTTTTTTTTAGTTCGTGATAGAAGGCCCTATGGAACCAGCCCACAGGATTTTGGGCAGGTTTTTAACATGTTCGATAATGAGCCCAGTACTGCTACGGTGAAGAATGATTTGCGTGATCGTTATCAAGTCCTCAGGAAATTCCATGCTACGGTAGTTGGTGGACCCTCTGGGATGAAAGAGCAGGCTTTAGTCAAGAGGTTTTTTAGGGTTAACACGCACGTCGTGTACAATCATCAGGAAGCAGCTAAATATGAGAATCATACTGAGAATGCTTTGTTGCTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATACGCATCTATTTATATGATGCCGTTACGAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVSIAQGINRRRSWTYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPQDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYLYDAVTN

NCBI Accession NP_958312.1
Location 1072-1476
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCACGCACAGGGGAACACATCACTGCTCTTCAAGCAAAGAATGGCGTTTTTATATGGGAGATAAACAATCCCCTCTATTTCACGATAACAAACCACGACATCAGGCCATTCAACATGAACCAAGACATCCTCACACTCCAAATACGATTCAATCACAACCTCAGGAGGGCACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCTTTTCTTAAGGGTATTTAGGTTCCAAGTTTTGAAGTATTTGAATAATTTAGGTGTAATTTCTATCAATAATGTAATTAGAGCAGTTGATCATGTGTTATATGTTGTACTTGTAAATACGATTTCCGTTATGGAAACTCATGAAATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGEHITALQAKNGVFIWEINNPLYFTITNHDIRPFNMNQDILTLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFRFQVLKYLNNLGVISINNVIRAVDHVLYVVLVNTISVMETHEIKFNLY

NCBI Accession NP_958313.1
Location 1217-1624
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAACCTTCGTCACCCTCGACAGGCCACTCTACTCAAGTACCAATCAAGGTCATCCACCGCAGAGCCAAGACTAAAGCCATCCGCCGTAAGCGAATAGACCTCGACTGCGGCTGTTCATACTACCTCCACATCGACTGCATCAACCATGGATTCACGCACAGGGGAACACATCACTGCTCTTCAAGCAAAGAATGGCGTTTTTATATGGGAGATAAACAATCCCCTCTATTTCACGATAACAAACCACGACATCAGGCCATTCAACATGAACCAAGACATCCTCACACTCCAAATACGATTCAATCACAACCTCAGGAGGGCACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCTTTTCTTAAGGGTATTTAG
Protein Sequence MQPSSPSTGHSTQVPIKVIHRRAKTKAIRRKRIDLDCGCSYYLHIDCINHGFTHRGTHHCSSSKEWRFYMGDKQSPLFHDNKPRHQAIQHEPRHPHTPNTIQSQPQEGTGDSQMFSQLQGLDDLTASDWSFLKGI

NCBI Accession NP_958314.1
Location 1548-2612
Gene Name C1
Protein Name replication associated protein C1
Coding Region ATGGCTCCTCCAAAGCGTTTTAAAATAAATTCCAAAAATTATTTCCTCACTTTCCCAAAATGCTCCCTCACTAAAGAAGAAGCGTTAGAGCAACTTCTAAATCTGTCAACCCCAACAAATAAAAAATTCATCAAAGTCTGCAGAGAGTTGCACACAAATGGGGAACCTCATCTCCACGTGCTTATGCAGTTCGAGGGGAAATACCAGTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTTGAATGGGGGGTATTCCAGGTCGACGGCAGAAGTGCTAGGGGAGGCTGTCGAAATGCTAACGACGCTGCAGCAGAGGCCTTAAATGCAGATTCCGCTGAAGCCGCTATGGCTATTATTAGGGAGAAACTCCCTAAAGAATTTATTTTTCAATATCATAATTTAAAAACTAATTTAGATAGGATTTTTCAAGAGCCCCCAGCTCCTTATGTTTCTCCTTTTCTTTCGTCTTCTTTTACTCAAGTTCCAGAAGAACTTGAAGAGTGCGTGTCTGAGAATGTCATGGGTGCCGCTGCGCGGCCGTGGAGGCCGAATAGTATTGTAGTAGAGGGCGATAGTCGTACCGGCAAAACTGTTTGGGCTAGGTCATTAGGGCCACATAATTACTTATGTGGTCATTTAGACTTAAGTCCAAAGGTTTATTCTAATGATGCTTGGTATAACGTCATTGATGACGTCGACCCGCACTATCTAAAGCACTGGAAAGAATTCTTTGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAATTCAAATTAAAGGCGGAATTCCCTCTATCTTCCTCTGCAATCCAGGCCCAACATCCTCATATAAAGAATTCCTAGAAGAGGCGAAGAATTACGCACTCAAGAGCTGGACACTAAAGAATGCAACCTTCGTCACCCTCGACAGGCCACTCTACTCAAGTACCAATCAAGGTCATCCACCGCAGAGCCAAGACTAA
Protein Sequence MAPPKRFKINSKNYFLTFPKCSLTKEEALEQLLNLSTPTNKKFIKVCRELHTNGEPHLHVLMQFEGKYQCTNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYIDKDGDTLEWGVFQVDGRSARGGCRNANDAAAEALNADSAEAAMAIIREKLPKEFIFQYHNLKTNLDRIFQEPPAPYVSPFLSSSFTQVPEELEECVSENVMGAAARPWRPNSIVVEGDSRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDWQSNTKYGKPIQIKGGIPSIFLCNPGPTSSYKEFLEEAKNYALKSWTLKNATFVTLDRPLYSSTNQGHPPQSQD

NCBI Accession NP_958315.1
Location 2198-2455
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTCCACGTGCTTATGCAGTTCGAGGGGAAATACCAGTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTTGAATGGGGGGTATTCCAGGTCGACGGCAGAAGTGCTAGGGGAGGCTGTCGAAATGCTAACGACGCTGCAGCAGAGGCCTTAA
Protein Sequence MGNLISTCLCSSRGNTSARITDSSTWYPQPGQHISIRTFRELNQAPTSSPTSTRTETPLNGGYSRSTAEVLGEAVEMLTTLQQRP

References More References in PubMed

1

First Report of Pepper vein yellows virus Infecting Hot Pepper in Sudan.

Alfaro-Fernández A, et al.  Plant Dis. 2014 Oct;98(10):1446. doi: 10.1094/PDIS-03-14-0251-PDN.

PMID: 30703980
2

Molecular and biological characterization of pepper yellow vein Mali virus (PepYVMV) isolates associated with pepper yellow vein disease in Burkina Faso.

Tiendrébéogo F, et al.  Arch Virol. 2011 Mar;156(3):483-7. doi: 10.1007/s00705-010-0854-2. Epub 2010 Nov 16.

PMID: 21080204
3

Virus surveys of Capsicum spp. in the Republic of Benin reveal the prevalence of pepper vein yellows virus and the identification of a previously uncharacterised polerovirus species.

Afouda L, et al.  Arch Virol. 2017 Jun;162(6):1599-1607. doi: 10.1007/s00705-017-3274-8. Epub 2017 Feb 20.

PMID: 28220324
4

Evidence of local evolution of tomato-infecting begomovirus species in West Africa: characterization of tomato leaf curl Mali virus and tomato yellow leaf crumple virus from Mali.

Zhou YC, et al.  Arch Virol. 2008;153(4):693-706. doi: 10.1007/s00705-008-0042-9. Epub 2008 Feb 16.

PMID: 18278427
5

Synergy between an emerging monopartite begomovirus and a DNA-B component.

Ouattara A, et al.  Sci Rep. 2022 Jan 13;12(1):695. doi: 10.1038/s41598-021-03957-7.

PMID: 35027584
6

Analysis of sequences from field samples reveals the presence of the recently described pepper vein yellows virus (genus Polerovirus) in six additional countries.

Knierim D, et al.  Arch Virol. 2013 Jun;158(6):1337-41. doi: 10.1007/s00705-012-1598-y. Epub 2013 Jan 11.

PMID: 23307365
7

Molecular characterization of two previously undescribed begomovirus-associated alphasatellite molecules infecting malvaceous species in Cameroon.

Leke WN, et al.  Arch Virol. 2020 Mar;165(3):775-779. doi: 10.1007/s00705-020-04523-8. Epub 2020 Jan 9.

PMID: 31919592
8

Tomato leaf curl Burkina Faso virus: a novel tomato-infecting monopartite begomovirus from Burkina Faso.

Ouattara A, et al.  Arch Virol. 2017 May;162(5):1427-1429. doi: 10.1007/s00705-017-3231-6. Epub 2017 Feb 4.

PMID: 28161765