Pepper yellow leaf curl virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCAATTTTTTTAAAATGGACCCCGCATTTGCGTATGTCCACTCATGGCCGCTCCTCAAAGCTTATTTATTAAATGGTCCCCTATAAAACTTAGGCCCCAAGTATTTACGTTAAACATGTGGGATCCATTATTAAACGAGTTCCCCGAGACGGTTCACGGGTTTCGGTGCATGCTTTCAATCAAATATCTTCAGTTACTCTCTGAAGGATACTCTCCAGATACGGTTGGTTTCGATCTAATACGTGAGTTAATTTCTATTTTGCGTGCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACTCCCGGGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGCAGCTGTCCCCACTGTCCGCGTCACAAAATCTCGAAGTTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTATAGAAGCCCTGATGTCCCTAAGGGATGTGAAGGCCCATGTAAGGTCCAATCTTTTGATGCGAAGAACGATATTGGGCATATGGGTAAGGTGATCTGTTTGTCTGACGTTACCCGTGGTATTGGACTTACCCATCGAGTTGGCAAACGTTTCTGTGTCAAGTCACTTTATTTCGTTGGCAAGATATGGATGGATGAAAATATTAAGGTTAAGAATCACACGAACACCGTTTTGTTCTGGATAGTTAGGGACCGACGTCCTACTGGAACGCCTTATGATTTTCAGCAGGTTTTTAATGTCTATGATAATGAGCCTTCCACGGCAACTGTGAAAAACGACCAGCGTGATCGTTTCCAGGTTATCAGGAGGTTCCAGGCAACGGTGACCGGTGGACAATATGCAGCGAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTGTATAATCACCAGGAAGCTGGGAAGTATGAGAACCATACTGAAAATGCTTTGTTATTGTATATGGCATGTACCCATGCCTCTAATCCCGTGTATGCTACTTTGAAAGTCAGGAGTTATTTCTATGACTCAGTGACGAATTAATAAATATTAAATTTTATTTCTGAATCCATGTCTACATACATAGTTTGTTCTATTTTTTTCCATAATACATGATTTACAGCTCTAATAATTGAGTTAATTGAAATTACACCTAGATTGTTTAGATACTTGAGGACTTGGGTTTTGAATACCCTTAAGAAAAGACCAATCTGAGGGTGTAAGGTCGTCCAGATTCGGTATGTCAGAAAACACTTGTGCACTCCCAGAGCTCTCCGAAGGTTGTAGTTGAATTGGATCCTTATTGTTATGATGTCCATGTTCATCGTGAATGGACGGTTGACGTGGTTGAGGATCTTGAAATAAAGGGGATTTTTGACCGTCCAAATATAAACGCCATTCTCTGCTTGAGCTGCAGTGAGTAGTTCCCCTGTGCGCGAATCCATGGTTGAAGCAGTTTAATGATAGAAAATAAGAACACCCGCATTCAAGATCGACTCTCCTCCTCCTGTTGCGTTTCTTCGCTTCCCTGTGCTGTACTTTGATTGGAACCTGAGTACAGTGGTCCTTGGAGGGTGACGAAGATCGCATTCTTTAGAGCCCAATTCTTTAGTGCGGTGTTCTTTTCCTCGTCGAGGAATTCTTTATAACTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTATTTAGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAGTGCGGGTCGACGTCATCAATGACGTTGAACCAAGCATCATTACTGTATACCTTTGGACTCAGATCTAAATGACCACACAGATAGTTGTGTGGGCCTAGTGACCTAGCCCACATCGTCTTCCCGGTTCTACTATCTCCCTCAATGACTATACTTTGAGGTCTTAAAGGCCGCGCAGCGGCATTGACGACGTTATGGGCCGCCCATTCATCAAGTTCTTCTGGAACTTGGTCAAAAGAAGAAGAAGAAAAAGGAGAAATATATTCCTCCATTGGAGGAGTAAAAATCCTATCTAAATTAGATTTTAAATTATGATACTGAAAAATATAATCTTTCGGGAGTTTCTCCCGAATGACAGCCATAGCGGCTTCAACGGAGCCTGTGTTTAGGGCCTCTGCAGCAGCATCATTAGCTGTCTGTTGACCTCCTCGTGCAGATCTTCCATCGATCTGAAAACTACCCCAGTTGATGTAATCACCGTCCTTTTTGATGTAGGACTTGACGTCCGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGTATTGGGTGGAGGTATTAGGGTGTGTGATGTCGAAATGTCTGGGATTACGGAACTGGGCTTTACCTTTGAATTGGATGAGCACATGGAGATGCAGTGACCCATTCTTATGTTTTTCTTGTGCTACTCGTATGAATAATTTATCGGATGGGCATGCTATTTGTTGGATAAGTTCTAGGGCTTGCTCTTTCGGAATGGGACATTTGGGATAAGTGAGAAAGATATTTTTTGCTTTCACTTGGAATGAATTAAGACGAGGCATTTTGACCGAGTGAATTGGGTGCTCTCCAAAGTTCTATAGAATGGGGGGCTTTGGGTGCCTATTTATACCGAGCACCCAAATGGCAATATTGTAATTCCCAAACGAAATTCAAAATTCAAAATTCTAAATCCAAAAGCGGCCATCCGTATAATATT
Gene Information
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NCBI Accession
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YP_007419079.1
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Location
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129-467 |
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Gene Name
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AV2 |
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Protein Name
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AV2 protein |
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Coding Region
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ATGTGGGATCCATTATTAAACGAGTTCCCCGAGACGGTTCACGGGTTTCGGTGCATGCTTTCAATCAAATATCTTCAGTTACTCTCTGAAGGATACTCTCCAGATACGGTTGGTTTCGATCTAATACGTGAGTTAATTTCTATTTTGCGTGCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACTCCCGGGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGCAGCTGTCCCCACTGTCCGCGTCACAAAATCTCGAAGTTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTATAG |
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Protein Sequence
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MWDPLLNEFPETVHGFRCMLSIKYLQLLSEGYSPDTVGFDLIRELISILRARNYVEASCRYRHFYSRVEGASSSELRQPLLNPCSCPHCPRHKISKLGEQAHESQAQNVQDV |
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NCBI Accession
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YP_007419080.1
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Location
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289-1059 |
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Gene Name
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AV1 |
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Protein Name
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AV1 protein |
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Coding Region
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ATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACTCCCGGGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGCAGCTGTCCCCACTGTCCGCGTCACAAAATCTCGAAGTTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTATAGAAGCCCTGATGTCCCTAAGGGATGTGAAGGCCCATGTAAGGTCCAATCTTTTGATGCGAAGAACGATATTGGGCATATGGGTAAGGTGATCTGTTTGTCTGACGTTACCCGTGGTATTGGACTTACCCATCGAGTTGGCAAACGTTTCTGTGTCAAGTCACTTTATTTCGTTGGCAAGATATGGATGGATGAAAATATTAAGGTTAAGAATCACACGAACACCGTTTTGTTCTGGATAGTTAGGGACCGACGTCCTACTGGAACGCCTTATGATTTTCAGCAGGTTTTTAATGTCTATGATAATGAGCCTTCCACGGCAACTGTGAAAAACGACCAGCGTGATCGTTTCCAGGTTATCAGGAGGTTCCAGGCAACGGTGACCGGTGGACAATATGCAGCGAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTGTATAATCACCAGGAAGCTGGGAAGTATGAGAACCATACTGAAAATGCTTTGTTATTGTATATGGCATGTACCCATGCCTCTAATCCCGTGTATGCTACTTTGAAAGTCAGGAGTTATTTCTATGACTCAGTGACGAATTAA |
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Protein Sequence
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MSKRPADIVISTPGSKVRRRLNFDSPYSTRAAVPTVRVTKSRSWANRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPYDFQQVFNVYDNEPSTATVKNDQRDRFQVIRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
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NCBI Accession
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YP_007419081.1
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Location
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1056-1460 |
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Gene Name
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AC3 |
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Protein Name
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AC3 protein |
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Coding Region
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ATGGATTCGCGCACAGGGGAACTACTCACTGCAGCTCAAGCAGAGAATGGCGTTTATATTTGGACGGTCAAAAATCCCCTTTATTTCAAGATCCTCAACCACGTCAACCGTCCATTCACGATGAACATGGACATCATAACAATAAGGATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACATACCGAATCTGGACGACCTTACACCCTCAGATTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTCCTCAAGTATCTAAACAATCTAGGTGTAATTTCAATTAACTCAATTATTAGAGCTGTAAATCATGTATTATGGAAAAAAATAGAACAAACTATGTATGTAGACATGGATTCAGAAATAAAATTTAATATTTATTAA |
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Protein Sequence
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MDSRTGELLTAAQAENGVYIWTVKNPLYFKILNHVNRPFTMNMDIITIRIQFNYNLRRALGVHKCFLTYRIWTTLHPQIGLFLRVFKTQVLKYLNNLGVISINSIIRAVNHVLWKKIEQTMYVDMDSEIKFNIY |
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NCBI Accession
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YP_007419082.1
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Location
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1153-1605 |
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Gene Name
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AC2 |
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Protein Name
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AC2 protein |
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Coding Region
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ATGCGATCTTCGTCACCCTCCAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAGGAGAGTCGATCTTGAATGCGGGTGTTCTTATTTTCTATCATTAAACTGCTTCAACCATGGATTCGCGCACAGGGGAACTACTCACTGCAGCTCAAGCAGAGAATGGCGTTTATATTTGGACGGTCAAAAATCCCCTTTATTTCAAGATCCTCAACCACGTCAACCGTCCATTCACGATGAACATGGACATCATAACAATAAGGATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACATACCGAATCTGGACGACCTTACACCCTCAGATTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTCCTCAAGTATCTAAACAATCTAGGTGTAATTTCAATTAA |
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Protein Sequence
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MRSSSPSKDHCTQVPIKVQHREAKKRNRRRRVDLECGCSYFLSLNCFNHGFAHRGTTHCSSSREWRLYLDGQKSPLFQDPQPRQPSIHDEHGHHNNKDPIQLQPSESSGSAQVFSDIPNLDDLTPSDWSFLKGIQNPSPQVSKQSRCNFN |
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NCBI Accession
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YP_007419083.1
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Location
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1502-2593 |
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Gene Name
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AC1 |
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Protein Name
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AC1 protein |
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Coding Region
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ATGCCTCGTCTTAATTCATTCCAAGTGAAAGCAAAAAATATCTTTCTCACTTATCCCAAATGTCCCATTCCGAAAGAGCAAGCCCTAGAACTTATCCAACAAATAGCATGCCCATCCGATAAATTATTCATACGAGTAGCACAAGAAAAACATAAGAATGGGTCACTGCATCTCCATGTGCTCATCCAATTCAAAGGTAAAGCCCAGTTCCGTAATCCCAGACATTTCGACATCACACACCCTAATACCTCCACCCAATACCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCGGACGTCAAGTCCTACATCAAAAAGGACGGTGATTACATCAACTGGGGTAGTTTTCAGATCGATGGAAGATCTGCACGAGGAGGTCAACAGACAGCTAATGATGCTGCTGCAGAGGCCCTAAACACAGGCTCCGTTGAAGCCGCTATGGCTGTCATTCGGGAGAAACTCCCGAAAGATTATATTTTTCAGTATCATAATTTAAAATCTAATTTAGATAGGATTTTTACTCCTCCAATGGAGGAATATATTTCTCCTTTTTCTTCTTCTTCTTTTGACCAAGTTCCAGAAGAACTTGATGAATGGGCGGCCCATAACGTCGTCAATGCCGCTGCGCGGCCTTTAAGACCTCAAAGTATAGTCATTGAGGGAGATAGTAGAACCGGGAAGACGATGTGGGCTAGGTCACTAGGCCCACACAACTATCTGTGTGGTCATTTAGATCTGAGTCCAAAGGTATACAGTAATGATGCTTGGTTCAACGTCATTGATGACGTCGACCCGCACTTCCTCAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCAAACACTAAATACGGGAAGCCAGTTCAAATTAAAGGCGGGATACCGACAATCTTCCTCTGCAATCCTGGTCCCAACAGCAGTTATAAAGAATTCCTCGACGAGGAAAAGAACACCGCACTAAAGAATTGGGCTCTAAAGAATGCGATCTTCGTCACCCTCCAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAGGAGAGTCGATCTTGA |
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Protein Sequence
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MPRLNSFQVKAKNIFLTYPKCPIPKEQALELIQQIACPSDKLFIRVAQEKHKNGSLHLHVLIQFKGKAQFRNPRHFDITHPNTSTQYHPNFQGAKSSSDVKSYIKKDGDYINWGSFQIDGRSARGGQQTANDAAAEALNTGSVEAAMAVIREKLPKDYIFQYHNLKSNLDRIFTPPMEEYISPFSSSSFDQVPEELDEWAAHNVVNAAARPLRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWALKNAIFVTLQGPLYSGSNQSTAQGSEETQQEEESRS |
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NCBI Accession
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YP_007419084.1
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Location
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2179-2436 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGGGTCACTGCATCTCCATGTGCTCATCCAATTCAAAGGTAAAGCCCAGTTCCGTAATCCCAGACATTTCGACATCACACACCCTAATACCTCCACCCAATACCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCGGACGTCAAGTCCTACATCAAAAAGGACGGTGATTACATCAACTGGGGTAGTTTTCAGATCGATGGAAGATCTGCACGAGGAGGTCAACAGACAGCTAATGATGCTGCTGCAGAGGCCCTAA |
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Protein Sequence
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MGHCISMCSSNSKVKPSSVIPDISTSHTLIPPPNTTQTSRELSPARTSSPTSKRTVITSTGVVFRSMEDLHEEVNRQLMMLLQRP |