Pepper yellow leaf curl Thailand virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_001502775.2
Isolate Thailand
Release date 2018/12/27
Submitter Chiemsombat,P., Srikhamphung,B.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_028989
ACCGGATGGCCGCGATTTTTTTTGAAGTGGTCCCCGCACGCGTGCTTGTCCAATCATAGCCACTCCTCAAAGCTTAGTTATTTAGGTGGTCCCCTATATAACTTAGTCCCCAAGTACCCACATCAAAACATGTGGGATCCTTTGCTAAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTGCAACTTGTAGAAAATACCTACTCCCCTGATACACTAGGCTACGACCTCATACGTGATCTCATTTTGGTGATTCGTGCTAGGGATTATGGCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGTCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATCTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGGTCATGGGCCAATCGGCCCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCGTACGAACAACGTCATGATGTAGTCCATGTAGGTAAGGTAATGTGTGTCTCTGATGTCACCCGTGGTAATGGGCTGACACATCGTGTTGGTAAGAGGTTCTGTATTAAGTCTGTCTATGTACTGGGCAAAATTTGGATGGACGAGAATATTAAAACCAAGAATCATACGAATACAGTCATGTTCTTTCTAGTTCGTGATAGGAGACCATATGGTACTCCACAGGATTTTGGTCAGGTGTTCAACATGTATGATAACGAGCCCAGTACCGCCACGGTGAAGAACGACAACAGAGATCGATATCAAGTCCTTCGTCGTTTTCAGGCAACTGTGACAGGTGGTCAGTATGCAAGCAAGGAACAAGCCATAGTTAGGAAATTCATGAAGGTGAACAACCATGTGACATACAACCATCAAGAAGCTGCGAAGTATGATAATCATACGGAGAATGCCCTTTTATTGTACATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACCTTGAAGATCAGAATCTATTTCTATGATTCGGTTCAAAATTAATAAACATTGAATTTTATTATATGTGAAACATGAGCATCAATTGTGCCCTCGAACACATTGTACAGAACATGTGTAATTGCTCTAATTACATTGTTGATACTAATCACGCCTAAATGGTCTAAATACTTCATACATTGATATCTAAATAGTCTTAAGAAACGCCAGGTCTGAGGACGTAAACGAGTCCAGATTTGGCAGATTAGATAGCATTGGTGTAGTTCCAACGCTCTCCTCAGGTTGTAGTTGAACTGGATCTGCACGGTGATTATGTCGTGGCTCATCATGAATGGCCTCTCGTGGTGTTGTGTTACTTTGAAATAGAGGGGATTGTTGACCGTCCAGATATATACGCCATTCTCTGCCTGAGCTGCAGTGATGCGTTCCCCGGTGCGTGAATCCATGGTTGTGACAACCCAGAGCTACGAAATATGAACACCCACAAGGGAGATCAACGCGTCTCCTTCTAGTTGTTTTCTTGGCGATTCGGTGTCGCACCTTGATAGGTACCTGAGTAGAGTGGGCCTTGGAGGGTGACGAAGATTGCATTCTTTACAGCCCAATTTTTAAGTGCGGTATTCTTGTCCTCTTGCAAGAACTCTTTATAGCTGGAATGTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGTTTACCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCAGCATTACTGTACACTTTTGGACTTAAATCTAAATGACCGCATAAGTAATTATGTGGTCCTAATGTCCTGGCCCACATTGTCTTCCCCGTCCTGCTATCACCCTCTATCACTATACTTATCGGTCTTAATGGCCGCGCAGCGGCACTAACAACATTCGTAGCAACCCACTCCTGAAGTTCTTCCGGAACTAGGTCAAAAGAAGAAGAACAGAAAGGAGAAATGTACATTTCTATCGGAGGAGGAAAAATCCTATCTAAATTGCTATTTAAGTGATGAAATTGTAATAAATAATCTTTCGGGGCCTTTTCCTTTAATATTGTGAGGGCCGATTCTTTAGATCCCGAATTGAGAGCCTCAGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTCGCCGATCTTCCATCGATCTGGAAAACTCCGTGATCAAGAACGTCCCCTTCCTTCTCCATATATGCTTTGACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCGTTGGTTTTTGCATTGGAATTTACCTTCGAATTGGATGAGGACATGCAAGTGAGGAGTCCCATCTTCGTGCAATTCCCTGCAAATCCGGATGAAGCGTTTATTGGTTGGTGTTTCTAGGGCTTGGATTTGGGAAAGTGCCTCTTCTTTGGTGAGAGAGCACCGTGGATATGTGAGGAAATAGTTTTTGGCATTTATTCGGAATTTATTTGGAGGAGCCATTGACTGGTCAATCAGTGTCTCTCAAACTGTGCTATTATATTGGTGTCTGGAGTCTCATATATAGGTGAGACCCTAAATGGCATTCTTGTAATTAACAAAATTAATTTGAAATTCAAATTTCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009216582.1
Location 130-480
Protein Name AV2
Coding Region ATGTGGGATCCTTTGCTAAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTGCAACTTGTAGAAAATACCTACTCCCCTGATACACTAGGCTACGACCTCATACGTGATCTCATTTTGGTGATTCGTGCTAGGGATTATGGCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGTCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATCTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGGTCATGGGCCAATCGGCCCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYGEASRRYSHFHSRLEGSSPSELRQPISQPCCCPHCPRHKQKEVMGQSAHVQKAQDIQDVQKP

NCBI Accession YP_009216583.1
Location 290-1063
Protein Name AV1
Coding Region ATGGCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGTCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATCTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGGTCATGGGCCAATCGGCCCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCGTACGAACAACGTCATGATGTAGTCCATGTAGGTAAGGTAATGTGTGTCTCTGATGTCACCCGTGGTAATGGGCTGACACATCGTGTTGGTAAGAGGTTCTGTATTAAGTCTGTCTATGTACTGGGCAAAATTTGGATGGACGAGAATATTAAAACCAAGAATCATACGAATACAGTCATGTTCTTTCTAGTTCGTGATAGGAGACCATATGGTACTCCACAGGATTTTGGTCAGGTGTTCAACATGTATGATAACGAGCCCAGTACCGCCACGGTGAAGAACGACAACAGAGATCGATATCAAGTCCTTCGTCGTTTTCAGGCAACTGTGACAGGTGGTCAGTATGCAAGCAAGGAACAAGCCATAGTTAGGAAATTCATGAAGGTGAACAACCATGTGACATACAACCATCAAGAAGCTGCGAAGTATGATAATCATACGGAGAATGCCCTTTTATTGTACATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACCTTGAAGATCAGAATCTATTTCTATGATTCGGTTCAAAATTAA
Protein Sequence MAKRPADIVISTPVSKVRRRLNFDSPYLSRAAAPTVLVTNKKRSWANRPMYRKPRIYRMYKSPDVPRGCEGPCKVQSYEQRHDVVHVGKVMCVSDVTRGNGLTHRVGKRFCIKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDNEPSTATVKNDNRDRYQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession YP_009216584.1
Location 1060-1464
Protein Name AC3
Coding Region ATGGATTCACGCACCGGGGAACGCATCACTGCAGCTCAGGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTCTATTTCAAAGTAACACAACACCACGAGAGGCCATTCATGATGAGCCACGACATAATCACCGTGCAGATCCAGTTCAACTACAACCTGAGGAGAGCGTTGGAACTACACCAATGCTATCTAATCTGCCAAATCTGGACTCGTTTACGTCCTCAGACCTGGCGTTTCTTAAGACTATTTAGATATCAATGTATGAAGTATTTAGACCATTTAGGCGTGATTAGTATCAACAATGTAATTAGAGCAATTACACATGTTCTGTACAATGTGTTCGAGGGCACAATTGATGCTCATGTTTCACATATAATAAAATTCAATGTTTATTAA
Protein Sequence MDSRTGERITAAQAENGVYIWTVNNPLYFKVTQHHERPFMMSHDIITVQIQFNYNLRRALELHQCYLICQIWTRLRPQTWRFLRLFRYQCMKYLDHLGVISINNVIRAITHVLYNVFEGTIDAHVSHIIKFNVY

NCBI Accession YP_009216585.1
Location 1205-1609
Protein Name AC2
Coding Region ATGCAATCTTCGTCACCCTCCAAGGCCCACTCTACTCAGGTACCTATCAAGGTGCGACACCGAATCGCCAAGAAAACAACTAGAAGGAGACGCGTTGATCTCCCTTGTGGGTGTTCATATTTCGTAGCTCTGGGTTGTCACAACCATGGATTCACGCACCGGGGAACGCATCACTGCAGCTCAGGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTCTATTTCAAAGTAACACAACACCACGAGAGGCCATTCATGATGAGCCACGACATAATCACCGTGCAGATCCAGTTCAACTACAACCTGAGGAGAGCGTTGGAACTACACCAATGCTATCTAATCTGCCAAATCTGGACTCGTTTACGTCCTCAGACCTGGCGTTTCTTAAGACTATTTAG
Protein Sequence MQSSSPSKAHSTQVPIKVRHRIAKKTTRRRRVDLPCGCSYFVALGCHNHGFTHRGTHHCSSGREWRIYLDGQQSPLFQSNTTPREAIHDEPRHNHRADPVQLQPEESVGTTPMLSNLPNLDSFTSSDLAFLKTI

NCBI Accession YP_009216586.1
Location 1527-2597
Protein Name AC1
Coding Region ATGGCTCCTCCAAATAAATTCCGAATAAATGCCAAAAACTATTTCCTCACATATCCACGGTGCTCTCTCACCAAAGAAGAGGCACTTTCCCAAATCCAAGCCCTAGAAACACCAACCAATAAACGCTTCATCCGGATTTGCAGGGAATTGCACGAAGATGGGACTCCTCACTTGCATGTCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAACCAACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGCATATATGGAGAAGGAAGGGGACGTTCTTGATCACGGAGTTTTCCAGATCGATGGAAGATCGGCGAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCTGAGGCTCTCAATTCGGGATCTAAAGAATCGGCCCTCACAATATTAAAGGAAAAGGCCCCGAAAGATTATTTATTACAATTTCATCACTTAAATAGCAATTTAGATAGGATTTTTCCTCCTCCGATAGAAATGTACATTTCTCCTTTCTGTTCTTCTTCTTTTGACCTAGTTCCGGAAGAACTTCAGGAGTGGGTTGCTACGAATGTTGTTAGTGCCGCTGCGCGGCCATTAAGACCGATAAGTATAGTGATAGAGGGTGATAGCAGGACGGGGAAGACAATGTGGGCCAGGACATTAGGACCACATAATTACTTATGCGGTCATTTAGATTTAAGTCCAAAAGTGTACAGTAATGCTGCTTGGTATAACGTCATTGATGACGTCGACCCGCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGTAAACCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCACATTCCAGCTATAAAGAGTTCTTGCAAGAGGACAAGAATACCGCACTTAAAAATTGGGCTGTAAAGAATGCAATCTTCGTCACCCTCCAAGGCCCACTCTACTCAGGTACCTATCAAGGTGCGACACCGAATCGCCAAGAAAACAACTAG
Protein Sequence MAPPNKFRINAKNYFLTYPRCSLTKEEALSQIQALETPTNKRFIRICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVKAYMEKEGDVLDHGVFQIDGRSARGGCQSANDAYAEALNSGSKESALTILKEKAPKDYLLQFHHLNSNLDRIFPPPIEMYISPFCSSSFDLVPEELQEWVATNVVSAAARPLRPISIVIEGDSRTGKTMWARTLGPHNYLCGHLDLSPKVYSNAAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPHSSYKEFLQEDKNTALKNWAVKNAIFVTLQGPLYSGTYQGATPNRQENN

NCBI Accession YP_009216587.1
Location 2147-2440
Protein Name AC4
Coding Region ATGGGACTCCTCACTTGCATGTCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAACCAACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGCATATATGGAGAAGGAAGGGGACGTTCTTGATCACGGAGTTTTCCAGATCGATGGAAGATCGGCGAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCTGAGGCTCTCAATTCGGGATCTAAAGAATCGGCCCTCACAATATTAA
Protein Sequence MGLLTCMSSSNSKVNSNAKTNDSSTSHPQPGQHISIRTFRELKAQQMSKHIWRRKGTFLITEFSRSMEDRREEVANLPTTHMLRLSIRDLKNRPSQY

References More References in PubMed

1

Development and application of triple antibody sandwich enzyme-linked immunosorbent assays for begomovirus detection using monoclonal antibodies against Tomato yellow leaf curl Thailand virus.

Seepiban C, et al.  Virol J. 2017 May 30;14(1):99. doi: 10.1186/s12985-017-0763-z.

PMID: 28558726
2

Identification of the determinant of tomato yellow leaf curl Kanchanaburi virus infectivity in tomato.

An JW, et al.  Virus Res. 2021 Jan 2;291:198192. doi: 10.1016/j.virusres.2020.198192. Epub 2020 Oct 13.

PMID: 33058965
3

First Report of Tomato yellow leaf curl Thailand virus Associated with Pepper Leaf Curl Disease in Taiwan.

Shih SL, et al.  Plant Dis. 2010 May;94(5):637. doi: 10.1094/PDIS-94-5-0637B.

PMID: 30754457
4

Tomato yellow leaf curl viruses: ménage à trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
5

Detection of tomato yellow leaf curl Thailand virus by PCR without DNA extraction.

Ieamkhang S, et al.  Mol Biotechnol. 2005 Nov;31(3):233-8. doi: 10.1385/MB:31:3:233.

PMID: 16230773
6

Incidence and Molecular Identification of Begomoviruses Infecting Tomato and Pepper in Myanmar.

Kwak HR, et al.  Plants (Basel). 2022 Apr 10;11(8):1031. doi: 10.3390/plants11081031.

PMID: 35448759
7

Molecular characterization of squash leaf curl Yunnan virus, a new begomovirus and evidence for recombination.

Xie Y, et al.  Arch Virol. 2003 Oct;148(10):2047-54. doi: 10.1007/s00705-003-0153-2.

PMID: 14551824
8

Identification of begomoviruses associated with the insect vector Bemisia tabaci and various host plants on Java Island, Indonesia.

Lestari SM, et al.  Arch Insect Biochem Physiol. 2023 Feb;112(2):e21984. doi: 10.1002/arch.21984. Epub 2022 Nov 17.

PMID: 36397643
9

Emergence and diversity of begomoviruses infecting solanaceous crops in East and Southeast Asia.

Kenyon L, et al.  Virus Res. 2014 Jun 24;186:104-13. doi: 10.1016/j.virusres.2013.12.026. Epub 2014 Jan 15.

PMID: 24440320