Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_001502775.2 |
Isolate | Thailand |
Release date | 2018/12/27 |
Submitter | Chiemsombat,P., Srikhamphung,B. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009216582.1 |
---|---|
Location | 130-480 |
Protein Name | AV2 |
Coding Region | ATGTGGGATCCTTTGCTAAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTGCAACTTGTAGAAAATACCTACTCCCCTGATACACTAGGCTACGACCTCATACGTGATCTCATTTTGGTGATTCGTGCTAGGGATTATGGCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGTCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATCTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGGTCATGGGCCAATCGGCCCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGA |
Protein Sequence | MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYGEASRRYSHFHSRLEGSSPSELRQPISQPCCCPHCPRHKQKEVMGQSAHVQKAQDIQDVQKP |
NCBI Accession | YP_009216583.1 |
---|---|
Location | 290-1063 |
Protein Name | AV1 |
Coding Region | ATGGCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGTCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATCTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGGTCATGGGCCAATCGGCCCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCGTACGAACAACGTCATGATGTAGTCCATGTAGGTAAGGTAATGTGTGTCTCTGATGTCACCCGTGGTAATGGGCTGACACATCGTGTTGGTAAGAGGTTCTGTATTAAGTCTGTCTATGTACTGGGCAAAATTTGGATGGACGAGAATATTAAAACCAAGAATCATACGAATACAGTCATGTTCTTTCTAGTTCGTGATAGGAGACCATATGGTACTCCACAGGATTTTGGTCAGGTGTTCAACATGTATGATAACGAGCCCAGTACCGCCACGGTGAAGAACGACAACAGAGATCGATATCAAGTCCTTCGTCGTTTTCAGGCAACTGTGACAGGTGGTCAGTATGCAAGCAAGGAACAAGCCATAGTTAGGAAATTCATGAAGGTGAACAACCATGTGACATACAACCATCAAGAAGCTGCGAAGTATGATAATCATACGGAGAATGCCCTTTTATTGTACATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACCTTGAAGATCAGAATCTATTTCTATGATTCGGTTCAAAATTAA |
Protein Sequence | MAKRPADIVISTPVSKVRRRLNFDSPYLSRAAAPTVLVTNKKRSWANRPMYRKPRIYRMYKSPDVPRGCEGPCKVQSYEQRHDVVHVGKVMCVSDVTRGNGLTHRVGKRFCIKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDNEPSTATVKNDNRDRYQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
NCBI Accession | YP_009216584.1 |
---|---|
Location | 1060-1464 |
Protein Name | AC3 |
Coding Region | ATGGATTCACGCACCGGGGAACGCATCACTGCAGCTCAGGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTCTATTTCAAAGTAACACAACACCACGAGAGGCCATTCATGATGAGCCACGACATAATCACCGTGCAGATCCAGTTCAACTACAACCTGAGGAGAGCGTTGGAACTACACCAATGCTATCTAATCTGCCAAATCTGGACTCGTTTACGTCCTCAGACCTGGCGTTTCTTAAGACTATTTAGATATCAATGTATGAAGTATTTAGACCATTTAGGCGTGATTAGTATCAACAATGTAATTAGAGCAATTACACATGTTCTGTACAATGTGTTCGAGGGCACAATTGATGCTCATGTTTCACATATAATAAAATTCAATGTTTATTAA |
Protein Sequence | MDSRTGERITAAQAENGVYIWTVNNPLYFKVTQHHERPFMMSHDIITVQIQFNYNLRRALELHQCYLICQIWTRLRPQTWRFLRLFRYQCMKYLDHLGVISINNVIRAITHVLYNVFEGTIDAHVSHIIKFNVY |
NCBI Accession | YP_009216585.1 |
---|---|
Location | 1205-1609 |
Protein Name | AC2 |
Coding Region | ATGCAATCTTCGTCACCCTCCAAGGCCCACTCTACTCAGGTACCTATCAAGGTGCGACACCGAATCGCCAAGAAAACAACTAGAAGGAGACGCGTTGATCTCCCTTGTGGGTGTTCATATTTCGTAGCTCTGGGTTGTCACAACCATGGATTCACGCACCGGGGAACGCATCACTGCAGCTCAGGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTCTATTTCAAAGTAACACAACACCACGAGAGGCCATTCATGATGAGCCACGACATAATCACCGTGCAGATCCAGTTCAACTACAACCTGAGGAGAGCGTTGGAACTACACCAATGCTATCTAATCTGCCAAATCTGGACTCGTTTACGTCCTCAGACCTGGCGTTTCTTAAGACTATTTAG |
Protein Sequence | MQSSSPSKAHSTQVPIKVRHRIAKKTTRRRRVDLPCGCSYFVALGCHNHGFTHRGTHHCSSGREWRIYLDGQQSPLFQSNTTPREAIHDEPRHNHRADPVQLQPEESVGTTPMLSNLPNLDSFTSSDLAFLKTI |
NCBI Accession | YP_009216586.1 |
---|---|
Location | 1527-2597 |
Protein Name | AC1 |
Coding Region | ATGGCTCCTCCAAATAAATTCCGAATAAATGCCAAAAACTATTTCCTCACATATCCACGGTGCTCTCTCACCAAAGAAGAGGCACTTTCCCAAATCCAAGCCCTAGAAACACCAACCAATAAACGCTTCATCCGGATTTGCAGGGAATTGCACGAAGATGGGACTCCTCACTTGCATGTCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAACCAACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGCATATATGGAGAAGGAAGGGGACGTTCTTGATCACGGAGTTTTCCAGATCGATGGAAGATCGGCGAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCTGAGGCTCTCAATTCGGGATCTAAAGAATCGGCCCTCACAATATTAAAGGAAAAGGCCCCGAAAGATTATTTATTACAATTTCATCACTTAAATAGCAATTTAGATAGGATTTTTCCTCCTCCGATAGAAATGTACATTTCTCCTTTCTGTTCTTCTTCTTTTGACCTAGTTCCGGAAGAACTTCAGGAGTGGGTTGCTACGAATGTTGTTAGTGCCGCTGCGCGGCCATTAAGACCGATAAGTATAGTGATAGAGGGTGATAGCAGGACGGGGAAGACAATGTGGGCCAGGACATTAGGACCACATAATTACTTATGCGGTCATTTAGATTTAAGTCCAAAAGTGTACAGTAATGCTGCTTGGTATAACGTCATTGATGACGTCGACCCGCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGTAAACCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCACATTCCAGCTATAAAGAGTTCTTGCAAGAGGACAAGAATACCGCACTTAAAAATTGGGCTGTAAAGAATGCAATCTTCGTCACCCTCCAAGGCCCACTCTACTCAGGTACCTATCAAGGTGCGACACCGAATCGCCAAGAAAACAACTAG |
Protein Sequence | MAPPNKFRINAKNYFLTYPRCSLTKEEALSQIQALETPTNKRFIRICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVKAYMEKEGDVLDHGVFQIDGRSARGGCQSANDAYAEALNSGSKESALTILKEKAPKDYLLQFHHLNSNLDRIFPPPIEMYISPFCSSSFDLVPEELQEWVATNVVSAAARPLRPISIVIEGDSRTGKTMWARTLGPHNYLCGHLDLSPKVYSNAAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPHSSYKEFLQEDKNTALKNWAVKNAIFVTLQGPLYSGTYQGATPNRQENN |
NCBI Accession | YP_009216587.1 |
---|---|
Location | 2147-2440 |
Protein Name | AC4 |
Coding Region | ATGGGACTCCTCACTTGCATGTCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAACCAACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGCATATATGGAGAAGGAAGGGGACGTTCTTGATCACGGAGTTTTCCAGATCGATGGAAGATCGGCGAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCTGAGGCTCTCAATTCGGGATCTAAAGAATCGGCCCTCACAATATTAA |
Protein Sequence | MGLLTCMSSSNSKVNSNAKTNDSSTSHPQPGQHISIRTFRELKAQQMSKHIWRRKGTFLITEFSRSMEDRREEVANLPTTHMLRLSIRDLKNRPSQY |
1 |
Seepiban C, et al. Virol J. 2017 May 30;14(1):99. doi: 10.1186/s12985-017-0763-z. PMID: 28558726 |
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2 |
An JW, et al. Virus Res. 2021 Jan 2;291:198192. doi: 10.1016/j.virusres.2020.198192. Epub 2020 Oct 13. PMID: 33058965 |
3 |
Shih SL, et al. Plant Dis. 2010 May;94(5):637. doi: 10.1094/PDIS-94-5-0637B. PMID: 30754457 |
4 |
Díaz-Pendón JA, et al. Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x. PMID: 20618703 |
5 |
Detection of tomato yellow leaf curl Thailand virus by PCR without DNA extraction. Ieamkhang S, et al. Mol Biotechnol. 2005 Nov;31(3):233-8. doi: 10.1385/MB:31:3:233. PMID: 16230773 |
6 |
Incidence and Molecular Identification of Begomoviruses Infecting Tomato and Pepper in Myanmar. Kwak HR, et al. Plants (Basel). 2022 Apr 10;11(8):1031. doi: 10.3390/plants11081031. PMID: 35448759 |
7 |
Xie Y, et al. Arch Virol. 2003 Oct;148(10):2047-54. doi: 10.1007/s00705-003-0153-2. PMID: 14551824 |
8 |
Lestari SM, et al. Arch Insect Biochem Physiol. 2023 Feb;112(2):e21984. doi: 10.1002/arch.21984. Epub 2022 Nov 17. PMID: 36397643 |
9 |
Emergence and diversity of begomoviruses infecting solanaceous crops in East and Southeast Asia. Kenyon L, et al. Virus Res. 2014 Jun 24;186:104-13. doi: 10.1016/j.virusres.2013.12.026. Epub 2014 Jan 15. PMID: 24440320 |