Pepper yellow leaf curl Indonesia virus 2

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004787615.1
Isolate Indonesia
Release date 2021/6/1
Submitter Jamsari,J., Ferita,I., Noverta,A., Husada,E.D., Herberg,F.W., Nellen,W., Syukriani,L.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055146
TATTACCGGATGGCCGCGATTTTTTTTAAACGTGGTCCCATAAGCCAACCTTTTGACTGACCAATGGCGTTGCGTCTGAAAAGCTTAGTTAGTGCGTAGCGCACTATAAAGAGAGGGACCACGCTCCACTATCTAAAGATGTGGGATCCGCTTGTGCATCCGTTTCCAGAAACCCTACATGGATTTCGATGCATGTTGGCGATCAAGTATCTGCAAAGCTTAGAGGCTACGTATTCTCCTGATACGGTTGGAGGTGAATTCGTGAAGGATTTGATCTGTTTGCTGCGGTGTAAAAACTATGCCGAAGCGTTCCATCGATACAGTGTCGTCGTTGCCAATGTCTATAACACGCCGGAGACTAAACTACGCGAGTCAGTACAGTCTCCCTGCTGCTGCCCCCACTGCCCCAGGCATGTCTTACAAACGAAGAGCGTGGGTAAATCGGCCTATGAATCGGAAACCCAGATTCTACAGGGGTCGAAGGACCAGTGATGTTCCACGGGGTTGTGAAGGACCTTGTAAGGTCCAATCCTTTGAACAGAGACATGACGTAACACATACTGGGAAGGTCCTCTGTGTTTCGGATGTCACGAGAGGTGGTGGTATTACGCACAGAGTAGGTAAAAGATTCTGTGTGAAATCTGTATATATTATTGGCAAAGTATGGATGGACGAGAACATCAAGTCGAAGAACCACACTAACAACGTCATGTTTTGGCTTGTTCGTGACCGGCGACCAGTTACAACTCCTTATGGCTTCGGTGAGTTGTTCAACATGTATGATAATGAACCCAGCACAGCAACTATCAAGAACGATCTTCGTGATCGTGTTCAGGTGTTACACCGTTTCTCAGCCACGGTGACAGGTGGTCAGTATGCAAGCAAGGAACAAGCAATCGTGAAGAGATTTTTTAGAGTTAACAACTATGTTGTTTACAATCACCAGGAAGCAGCAAAATATGAAAATCACACTGAAAATGCATTGTTATTGTATATGGCATGTACTCATGCATCTAATCCTGTATACGCGACATTGAAAATTCGTATTTACTTCTACGACAATGTAACAAATTAATAAAGCTTGAATTTTATTATGTGCAATTGCTCTGCGTACACAGTCTGTTCAAGTACATCCCACAAAACATAATTCACAGCTCTAATTACATTGTTTATCGACACGACGCCTATATTGGACAGATATCTAAGTACATTGTTCTTAAATACTCTTAAGAAATGCCAAATCTGAGGACGTAAACGAGTCCAGATGTGGAAGATTAAAAAACACTTGTGAATCCCCAGCGCTTTCCTCAGGTTGTGGTTGAACTGGATTTGTACTTCTATGTAGTCCATGTCGGTGTTGTACCCTCTGCTGCTGTGCCTCAGCACCTTGAAATAGAGGGGATTTGGAACCTTCCAAATATAGACGCCATTCTGCGCCTGAGCTGCAGTGATGTACTCCCCGGTGCGAAAATCCATATCCATGACAGTTGATACTGAGGTAATATGAGCAGCCGCAGTCTAAGTCAATACGTCTCCGGCGGATTATTTTCTTCTTCGCAATTTGGTGCAGTATCTTCTGTGGAACTTGAGTAGAGTGGCCCGTTGATGGTGACGAAGGTCGCATTTTTTAGTGCCCAAGATTTCAATGCATTATTTTTGTCCTCGTCAAGGTATTCTTTATATGACGAGGTAGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATTGTTGTATACCTTGGGGCTCAAGTCTAGATGTCCACAGAGATAATTATGGAGGCCCAATGATCGAGCCCACATTGTTTTGCCTGTACGACTCTCCCCCTCTATTACAATACTATTGGGTCTCCATGGCCGCGCAGCGGCATCCCTTACATTTTCAGCAGCCCATGCTTGGAGTTCTTCTGGAACTTGATCAAATGAAGAAGATGAAAAGGGACAAACAAAAACCTCTAGAGGAGGTGCAAAGATCCTATCTAAGTTAGCATTTAAATTATGAAATTGAAAAATATATTCCTTGGGAAGTTTTTCCCTTATTATTGCCATTGCTGCCTGTTTCGAACCTGCGTTCAAGGCTTCAGCAGCTGCATCGTTAGCTGTCTGCTGACCACCTCTAGCAGATCTCCCGTCGATCTGAAATACACCCCAGTCGACGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGCTCCCTGGAAGTTAGGATGGAATTGTGTGGAGGTGTTGGGGTGTGTAAGATCGAAGTGTCGATTATTTCTGAACTGGGCTTTACCTTTGAATTGTATGAGTACGTGGAGATGCAGAGACCCATCAGAATGTTTCTCTTGCGCGACTCTGATAAATAATTTATCAGAAGGACACTGTATATTTTTAAGAAGCTCAAGTGCTTCTTCTTTGGGAATAGGGCATTTGGGATATGTAAGGAATATGTTTTTGGCTTTTACTTGAAATGAATATGACCGAGGCATGTTTGACTCGTCAATTGGGAGCTCTCAAACTTCTACGGAATGGGGTGCTCTGGGAGCTCATTTATACCGAGCTCCCAAATGGCATAATTGTAATTTGCAGAAGAAATTCAAAATTCAAAAGCGGCCATCCGTATAA

Gene Information

NCBI Accession YP_010084713.1
Location 139-492
Gene Name V1
Protein Name putative precoat protein
Coding Region ATGTGGGATCCGCTTGTGCATCCGTTTCCAGAAACCCTACATGGATTTCGATGCATGTTGGCGATCAAGTATCTGCAAAGCTTAGAGGCTACGTATTCTCCTGATACGGTTGGAGGTGAATTCGTGAAGGATTTGATCTGTTTGCTGCGGTGTAAAAACTATGCCGAAGCGTTCCATCGATACAGTGTCGTCGTTGCCAATGTCTATAACACGCCGGAGACTAAACTACGCGAGTCAGTACAGTCTCCCTGCTGCTGCCCCCACTGCCCCAGGCATGTCTTACAAACGAAGAGCGTGGGTAAATCGGCCTATGAATCGGAAACCCAGATTCTACAGGGGTCGAAGGACCAGTGA
Protein Sequence MWDPLVHPFPETLHGFRCMLAIKYLQSLEATYSPDTVGGEFVKDLICLLRCKNYAEAFHRYSVVVANVYNTPETKLRESVQSPCCCPHCPRHVLQTKSVGKSAYESETQILQGSKDQ

NCBI Accession YP_010084714.1
Location 299-1075
Gene Name V2
Protein Name putative coat protein
Coding Region ATGCCGAAGCGTTCCATCGATACAGTGTCGTCGTTGCCAATGTCTATAACACGCCGGAGACTAAACTACGCGAGTCAGTACAGTCTCCCTGCTGCTGCCCCCACTGCCCCAGGCATGTCTTACAAACGAAGAGCGTGGGTAAATCGGCCTATGAATCGGAAACCCAGATTCTACAGGGGTCGAAGGACCAGTGATGTTCCACGGGGTTGTGAAGGACCTTGTAAGGTCCAATCCTTTGAACAGAGACATGACGTAACACATACTGGGAAGGTCCTCTGTGTTTCGGATGTCACGAGAGGTGGTGGTATTACGCACAGAGTAGGTAAAAGATTCTGTGTGAAATCTGTATATATTATTGGCAAAGTATGGATGGACGAGAACATCAAGTCGAAGAACCACACTAACAACGTCATGTTTTGGCTTGTTCGTGACCGGCGACCAGTTACAACTCCTTATGGCTTCGGTGAGTTGTTCAACATGTATGATAATGAACCCAGCACAGCAACTATCAAGAACGATCTTCGTGATCGTGTTCAGGTGTTACACCGTTTCTCAGCCACGGTGACAGGTGGTCAGTATGCAAGCAAGGAACAAGCAATCGTGAAGAGATTTTTTAGAGTTAACAACTATGTTGTTTACAATCACCAGGAAGCAGCAAAATATGAAAATCACACTGAAAATGCATTGTTATTGTATATGGCATGTACTCATGCATCTAATCCTGTATACGCGACATTGAAAATTCGTATTTACTTCTACGACAATGTAACAAATTAA
Protein Sequence MPKRSIDTVSSLPMSITRRRLNYASQYSLPAAAPTAPGMSYKRRAWVNRPMNRKPRFYRGRRTSDVPRGCEGPCKVQSFEQRHDVTHTGKVLCVSDVTRGGGITHRVGKRFCVKSVYIIGKVWMDENIKSKNHTNNVMFWLVRDRRPVTTPYGFGELFNMYDNEPSTATIKNDLRDRVQVLHRFSATVTGGQYASKEQAIVKRFFRVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDNVTN

NCBI Accession YP_010084715.1
Location 1072-1476
Gene Name C3
Protein Name putative replication enhancer protein
Coding Region ATGGATTTTCGCACCGGGGAGTACATCACTGCAGCTCAGGCGCAGAATGGCGTCTATATTTGGAAGGTTCCAAATCCCCTCTATTTCAAGGTGCTGAGGCACAGCAGCAGAGGGTACAACACCGACATGGACTACATAGAAGTACAAATCCAGTTCAACCACAACCTGAGGAAAGCGCTGGGGATTCACAAGTGTTTTTTAATCTTCCACATCTGGACTCGTTTACGTCCTCAGATTTGGCATTTCTTAAGAGTATTTAAGAACAATGTACTTAGATATCTGTCCAATATAGGCGTCGTGTCGATAAACAATGTAATTAGAGCTGTGAATTATGTTTTGTGGGATGTACTTGAACAGACTGTGTACGCAGAGCAATTGCACATAATAAAATTCAAGCTTTATTAA
Protein Sequence MDFRTGEYITAAQAQNGVYIWKVPNPLYFKVLRHSSRGYNTDMDYIEVQIQFNHNLRKALGIHKCFLIFHIWTRLRPQIWHFLRVFKNNVLRYLSNIGVVSINNVIRAVNYVLWDVLEQTVYAEQLHIIKFKLY

NCBI Accession YP_010084716.1
Location 1217-1624
Gene Name C2
Protein Name putative trans activator protein
Coding Region ATGCGACCTTCGTCACCATCAACGGGCCACTCTACTCAAGTTCCACAGAAGATACTGCACCAAATTGCGAAGAAGAAAATAATCCGCCGGAGACGTATTGACTTAGACTGCGGCTGCTCATATTACCTCAGTATCAACTGTCATGGATATGGATTTTCGCACCGGGGAGTACATCACTGCAGCTCAGGCGCAGAATGGCGTCTATATTTGGAAGGTTCCAAATCCCCTCTATTTCAAGGTGCTGAGGCACAGCAGCAGAGGGTACAACACCGACATGGACTACATAGAAGTACAAATCCAGTTCAACCACAACCTGAGGAAAGCGCTGGGGATTCACAAGTGTTTTTTAATCTTCCACATCTGGACTCGTTTACGTCCTCAGATTTGGCATTTCTTAAGAGTATTTAA
Protein Sequence MRPSSPSTGHSTQVPQKILHQIAKKKIIRRRRIDLDCGCSYYLSINCHGYGFSHRGVHHCSSGAEWRLYLEGSKSPLFQGAEAQQQRVQHRHGLHRSTNPVQPQPEESAGDSQVFFNLPHLDSFTSSDLAFLKSI

NCBI Accession YP_010084717.1
Location 1524-2612
Gene Name C1
Protein Name putative replicase protein
Coding Region ATGCCTCGGTCATATTCATTTCAAGTAAAAGCCAAAAACATATTCCTTACATATCCCAAATGCCCTATTCCCAAAGAAGAAGCACTTGAGCTTCTTAAAAATATACAGTGTCCTTCTGATAAATTATTTATCAGAGTCGCGCAAGAGAAACATTCTGATGGGTCTCTGCATCTCCACGTACTCATACAATTCAAAGGTAAAGCCCAGTTCAGAAATAATCGACACTTCGATCTTACACACCCCAACACCTCCACACAATTCCATCCTAACTTCCAGGGAGCTAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACGTCGACTGGGGTGTATTTCAGATCGACGGGAGATCTGCTAGAGGTGGTCAGCAGACAGCTAACGATGCAGCTGCTGAAGCCTTGAACGCAGGTTCGAAACAGGCAGCAATGGCAATAATAAGGGAAAAACTTCCCAAGGAATATATTTTTCAATTTCATAATTTAAATGCTAACTTAGATAGGATCTTTGCACCTCCTCTAGAGGTTTTTGTTTGTCCCTTTTCATCTTCTTCATTTGATCAAGTTCCAGAAGAACTCCAAGCATGGGCTGCTGAAAATGTAAGGGATGCCGCTGCGCGGCCATGGAGACCCAATAGTATTGTAATAGAGGGGGAGAGTCGTACAGGCAAAACAATGTGGGCTCGATCATTGGGCCTCCATAATTATCTCTGTGGACATCTAGACTTGAGCCCCAAGGTATACAACAATGACGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCACTTTAAAGAGTTTATGGGGGCCCAGAGGAACTGGCAAAGCAACACTAAGTACGGAAAGCCAATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCTGGTCCTACCTCGTCATATAAAGAATACCTTGACGAGGACAAAAATAATGCATTGAAATCTTGGGCACTAAAAAATGCGACCTTCGTCACCATCAACGGGCCACTCTACTCAAGTTCCACAGAAGATACTGCACCAAATTGCGAAGAAGAAAATAATCCGCCGGAGACGTATTGA
Protein Sequence MPRSYSFQVKAKNIFLTYPKCPIPKEEALELLKNIQCPSDKLFIRVAQEKHSDGSLHLHVLIQFKGKAQFRNNRHFDLTHPNTSTQFHPNFQGAKSSSDVKSYIEKDGDYVDWGVFQIDGRSARGGQQTANDAAAEALNAGSKQAAMAIIREKLPKEYIFQFHNLNANLDRIFAPPLEVFVCPFSSSSFDQVPEELQAWAAENVRDAAARPWRPNSIVIEGESRTGKTMWARSLGLHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRNWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNNALKSWALKNATFVTINGPLYSSSTEDTAPNCEEENNPPETY

References More References in PubMed

1

Identification of a New Begomovirus Associated with Yellow Leaf Curl Diseases of Tomato and Pepper in Sulawesi, Indonesia.

Tsai WS, et al.  Plant Dis. 2009 Mar;93(3):321. doi: 10.1094/PDIS-93-3-0321C.

PMID: 30764201
2

Pepper yellow leaf curl Aceh virus: a novel bipartite begomovirus isolated from chili pepper, tomato, and tobacco plants in Indonesia.

Kesumawati E, et al.  Arch Virol. 2019 Sep;164(9):2379-2383. doi: 10.1007/s00705-019-04316-8. Epub 2019 Jun 15.

PMID: 31203434
3

Genotyping-by-sequencing-based QTL mapping reveals novel loci for Pepper yellow leaf curl virus (PepYLCV) resistance in Capsicum annuum.

Siddique MI, et al.  PLoS One. 2022 Feb 17;17(2):e0264026. doi: 10.1371/journal.pone.0264026. eCollection 2022.

PMID: 35176091
4

Molecular Characterization of Pepper yellow leaf curl Indonesia virus in Leaf Curl and Yellowing Diseased Tomato and Pepper in Indonesia.

Tsai WS, et al.  Plant Dis. 2006 Feb;90(2):247. doi: 10.1094/PD-90-0247B.

PMID: 30786428
5

Ty-2 and Ty-3a Conferred Resistance are Insufficient Against Tomato Yellow Leaf Curl Kanchanaburi Virus from Southeast Asia in Single or Mixed Infections of Tomato.

Koeda S, et al.  Plant Dis. 2020 Dec;104(12):3221-3229. doi: 10.1094/PDIS-03-20-0613-RE. Epub 2020 Oct 12.

PMID: 33044916
6

First Report of Pepper yellow leaf curl Indonesia virus in Ageratum conyzoides in Indonesia.

Shibuya Y, et al.  Plant Dis. 2007 Sep;91(9):1198. doi: 10.1094/PDIS-91-9-1198B.

PMID: 30780641
7

First Report of Pepper vein yellows virus Infecting Hot Pepper in Sudan.

Alfaro-Fernández A, et al.  Plant Dis. 2014 Oct;98(10):1446. doi: 10.1094/PDIS-03-14-0251-PDN.

PMID: 30703980
8

PepYLCIV and PepYLCAV resistance gene Pepy-2 encodes DFDGD-Class RNA-dependent RNA polymerase in Capsicum.

Koeda S, et al.  Theor Appl Genet. 2022 Jul;135(7):2437-2452. doi: 10.1007/s00122-022-04125-9. Epub 2022 Jun 2.

PMID: 35652932
9

Identification of begomoviruses associated with the insect vector Bemisia tabaci and various host plants on Java Island, Indonesia.

Lestari SM, et al.  Arch Insect Biochem Physiol. 2023 Feb;112(2):e21984. doi: 10.1002/arch.21984. Epub 2022 Nov 17.

PMID: 36397643
10

A recessive gene pepy-1 encoding Pelota confers resistance to begomovirus isolates of PepYLCIV and PepYLCAV in Capsicum annuum.

Koeda S, et al.  Theor Appl Genet. 2021 Sep;134(9):2947-2964. doi: 10.1007/s00122-021-03870-7. Epub 2021 Jun 3.

PMID: 34081151