Pepper yellow leaf curl Indonesia virus 2

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004787615.1
Isolate Indonesia
Release date 2021/6/1
Submitter Jamsari,J., Ferita,I., Noverta,A., Husada,E.D., Herberg,F.W., Nellen,W., Syukriani,L.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055146
TATTACCGGATGGCCGCGATTTTTTTTAAACGTGGTCCCATAAGCCAACCTTTTGACTGACCAATGGCGTTGCGTCTGAAAAGCTTAGTTAGTGCGTAGCGCACTATAAAGAGAGGGACCACGCTCCACTATCTAAAGATGTGGGATCCGCTTGTGCATCCGTTTCCAGAAACCCTACATGGATTTCGATGCATGTTGGCGATCAAGTATCTGCAAAGCTTAGAGGCTACGTATTCTCCTGATACGGTTGGAGGTGAATTCGTGAAGGATTTGATCTGTTTGCTGCGGTGTAAAAACTATGCCGAAGCGTTCCATCGATACAGTGTCGTCGTTGCCAATGTCTATAACACGCCGGAGACTAAACTACGCGAGTCAGTACAGTCTCCCTGCTGCTGCCCCCACTGCCCCAGGCATGTCTTACAAACGAAGAGCGTGGGTAAATCGGCCTATGAATCGGAAACCCAGATTCTACAGGGGTCGAAGGACCAGTGATGTTCCACGGGGTTGTGAAGGACCTTGTAAGGTCCAATCCTTTGAACAGAGACATGACGTAACACATACTGGGAAGGTCCTCTGTGTTTCGGATGTCACGAGAGGTGGTGGTATTACGCACAGAGTAGGTAAAAGATTCTGTGTGAAATCTGTATATATTATTGGCAAAGTATGGATGGACGAGAACATCAAGTCGAAGAACCACACTAACAACGTCATGTTTTGGCTTGTTCGTGACCGGCGACCAGTTACAACTCCTTATGGCTTCGGTGAGTTGTTCAACATGTATGATAATGAACCCAGCACAGCAACTATCAAGAACGATCTTCGTGATCGTGTTCAGGTGTTACACCGTTTCTCAGCCACGGTGACAGGTGGTCAGTATGCAAGCAAGGAACAAGCAATCGTGAAGAGATTTTTTAGAGTTAACAACTATGTTGTTTACAATCACCAGGAAGCAGCAAAATATGAAAATCACACTGAAAATGCATTGTTATTGTATATGGCATGTACTCATGCATCTAATCCTGTATACGCGACATTGAAAATTCGTATTTACTTCTACGACAATGTAACAAATTAATAAAGCTTGAATTTTATTATGTGCAATTGCTCTGCGTACACAGTCTGTTCAAGTACATCCCACAAAACATAATTCACAGCTCTAATTACATTGTTTATCGACACGACGCCTATATTGGACAGATATCTAAGTACATTGTTCTTAAATACTCTTAAGAAATGCCAAATCTGAGGACGTAAACGAGTCCAGATGTGGAAGATTAAAAAACACTTGTGAATCCCCAGCGCTTTCCTCAGGTTGTGGTTGAACTGGATTTGTACTTCTATGTAGTCCATGTCGGTGTTGTACCCTCTGCTGCTGTGCCTCAGCACCTTGAAATAGAGGGGATTTGGAACCTTCCAAATATAGACGCCATTCTGCGCCTGAGCTGCAGTGATGTACTCCCCGGTGCGAAAATCCATATCCATGACAGTTGATACTGAGGTAATATGAGCAGCCGCAGTCTAAGTCAATACGTCTCCGGCGGATTATTTTCTTCTTCGCAATTTGGTGCAGTATCTTCTGTGGAACTTGAGTAGAGTGGCCCGTTGATGGTGACGAAGGTCGCATTTTTTAGTGCCCAAGATTTCAATGCATTATTTTTGTCCTCGTCAAGGTATTCTTTATATGACGAGGTAGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATTGTTGTATACCTTGGGGCTCAAGTCTAGATGTCCACAGAGATAATTATGGAGGCCCAATGATCGAGCCCACATTGTTTTGCCTGTACGACTCTCCCCCTCTATTACAATACTATTGGGTCTCCATGGCCGCGCAGCGGCATCCCTTACATTTTCAGCAGCCCATGCTTGGAGTTCTTCTGGAACTTGATCAAATGAAGAAGATGAAAAGGGACAAACAAAAACCTCTAGAGGAGGTGCAAAGATCCTATCTAAGTTAGCATTTAAATTATGAAATTGAAAAATATATTCCTTGGGAAGTTTTTCCCTTATTATTGCCATTGCTGCCTGTTTCGAACCTGCGTTCAAGGCTTCAGCAGCTGCATCGTTAGCTGTCTGCTGACCACCTCTAGCAGATCTCCCGTCGATCTGAAATACACCCCAGTCGACGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGCTCCCTGGAAGTTAGGATGGAATTGTGTGGAGGTGTTGGGGTGTGTAAGATCGAAGTGTCGATTATTTCTGAACTGGGCTTTACCTTTGAATTGTATGAGTACGTGGAGATGCAGAGACCCATCAGAATGTTTCTCTTGCGCGACTCTGATAAATAATTTATCAGAAGGACACTGTATATTTTTAAGAAGCTCAAGTGCTTCTTCTTTGGGAATAGGGCATTTGGGATATGTAAGGAATATGTTTTTGGCTTTTACTTGAAATGAATATGACCGAGGCATGTTTGACTCGTCAATTGGGAGCTCTCAAACTTCTACGGAATGGGGTGCTCTGGGAGCTCATTTATACCGAGCTCCCAAATGGCATAATTGTAATTTGCAGAAGAAATTCAAAATTCAAAAGCGGCCATCCGTATAA

Gene Information

NCBI Accession YP_010084713.1
Location 139-492
Gene Name V1
Protein Name putative precoat protein
Coding Region ATGTGGGATCCGCTTGTGCATCCGTTTCCAGAAACCCTACATGGATTTCGATGCATGTTGGCGATCAAGTATCTGCAAAGCTTAGAGGCTACGTATTCTCCTGATACGGTTGGAGGTGAATTCGTGAAGGATTTGATCTGTTTGCTGCGGTGTAAAAACTATGCCGAAGCGTTCCATCGATACAGTGTCGTCGTTGCCAATGTCTATAACACGCCGGAGACTAAACTACGCGAGTCAGTACAGTCTCCCTGCTGCTGCCCCCACTGCCCCAGGCATGTCTTACAAACGAAGAGCGTGGGTAAATCGGCCTATGAATCGGAAACCCAGATTCTACAGGGGTCGAAGGACCAGTGA
Protein Sequence MWDPLVHPFPETLHGFRCMLAIKYLQSLEATYSPDTVGGEFVKDLICLLRCKNYAEAFHRYSVVVANVYNTPETKLRESVQSPCCCPHCPRHVLQTKSVGKSAYESETQILQGSKDQ

NCBI Accession YP_010084714.1
Location 299-1075
Gene Name V2
Protein Name putative coat protein
Coding Region ATGCCGAAGCGTTCCATCGATACAGTGTCGTCGTTGCCAATGTCTATAACACGCCGGAGACTAAACTACGCGAGTCAGTACAGTCTCCCTGCTGCTGCCCCCACTGCCCCAGGCATGTCTTACAAACGAAGAGCGTGGGTAAATCGGCCTATGAATCGGAAACCCAGATTCTACAGGGGTCGAAGGACCAGTGATGTTCCACGGGGTTGTGAAGGACCTTGTAAGGTCCAATCCTTTGAACAGAGACATGACGTAACACATACTGGGAAGGTCCTCTGTGTTTCGGATGTCACGAGAGGTGGTGGTATTACGCACAGAGTAGGTAAAAGATTCTGTGTGAAATCTGTATATATTATTGGCAAAGTATGGATGGACGAGAACATCAAGTCGAAGAACCACACTAACAACGTCATGTTTTGGCTTGTTCGTGACCGGCGACCAGTTACAACTCCTTATGGCTTCGGTGAGTTGTTCAACATGTATGATAATGAACCCAGCACAGCAACTATCAAGAACGATCTTCGTGATCGTGTTCAGGTGTTACACCGTTTCTCAGCCACGGTGACAGGTGGTCAGTATGCAAGCAAGGAACAAGCAATCGTGAAGAGATTTTTTAGAGTTAACAACTATGTTGTTTACAATCACCAGGAAGCAGCAAAATATGAAAATCACACTGAAAATGCATTGTTATTGTATATGGCATGTACTCATGCATCTAATCCTGTATACGCGACATTGAAAATTCGTATTTACTTCTACGACAATGTAACAAATTAA
Protein Sequence MPKRSIDTVSSLPMSITRRRLNYASQYSLPAAAPTAPGMSYKRRAWVNRPMNRKPRFYRGRRTSDVPRGCEGPCKVQSFEQRHDVTHTGKVLCVSDVTRGGGITHRVGKRFCVKSVYIIGKVWMDENIKSKNHTNNVMFWLVRDRRPVTTPYGFGELFNMYDNEPSTATIKNDLRDRVQVLHRFSATVTGGQYASKEQAIVKRFFRVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDNVTN

NCBI Accession YP_010084715.1
Location 1072-1476
Gene Name C3
Protein Name putative replication enhancer protein
Coding Region ATGGATTTTCGCACCGGGGAGTACATCACTGCAGCTCAGGCGCAGAATGGCGTCTATATTTGGAAGGTTCCAAATCCCCTCTATTTCAAGGTGCTGAGGCACAGCAGCAGAGGGTACAACACCGACATGGACTACATAGAAGTACAAATCCAGTTCAACCACAACCTGAGGAAAGCGCTGGGGATTCACAAGTGTTTTTTAATCTTCCACATCTGGACTCGTTTACGTCCTCAGATTTGGCATTTCTTAAGAGTATTTAAGAACAATGTACTTAGATATCTGTCCAATATAGGCGTCGTGTCGATAAACAATGTAATTAGAGCTGTGAATTATGTTTTGTGGGATGTACTTGAACAGACTGTGTACGCAGAGCAATTGCACATAATAAAATTCAAGCTTTATTAA
Protein Sequence MDFRTGEYITAAQAQNGVYIWKVPNPLYFKVLRHSSRGYNTDMDYIEVQIQFNHNLRKALGIHKCFLIFHIWTRLRPQIWHFLRVFKNNVLRYLSNIGVVSINNVIRAVNYVLWDVLEQTVYAEQLHIIKFKLY

NCBI Accession YP_010084716.1
Location 1217-1624
Gene Name C2
Protein Name putative trans activator protein
Coding Region ATGCGACCTTCGTCACCATCAACGGGCCACTCTACTCAAGTTCCACAGAAGATACTGCACCAAATTGCGAAGAAGAAAATAATCCGCCGGAGACGTATTGACTTAGACTGCGGCTGCTCATATTACCTCAGTATCAACTGTCATGGATATGGATTTTCGCACCGGGGAGTACATCACTGCAGCTCAGGCGCAGAATGGCGTCTATATTTGGAAGGTTCCAAATCCCCTCTATTTCAAGGTGCTGAGGCACAGCAGCAGAGGGTACAACACCGACATGGACTACATAGAAGTACAAATCCAGTTCAACCACAACCTGAGGAAAGCGCTGGGGATTCACAAGTGTTTTTTAATCTTCCACATCTGGACTCGTTTACGTCCTCAGATTTGGCATTTCTTAAGAGTATTTAA
Protein Sequence MRPSSPSTGHSTQVPQKILHQIAKKKIIRRRRIDLDCGCSYYLSINCHGYGFSHRGVHHCSSGAEWRLYLEGSKSPLFQGAEAQQQRVQHRHGLHRSTNPVQPQPEESAGDSQVFFNLPHLDSFTSSDLAFLKSI

NCBI Accession YP_010084717.1
Location 1524-2612
Gene Name C1
Protein Name putative replicase protein
Coding Region ATGCCTCGGTCATATTCATTTCAAGTAAAAGCCAAAAACATATTCCTTACATATCCCAAATGCCCTATTCCCAAAGAAGAAGCACTTGAGCTTCTTAAAAATATACAGTGTCCTTCTGATAAATTATTTATCAGAGTCGCGCAAGAGAAACATTCTGATGGGTCTCTGCATCTCCACGTACTCATACAATTCAAAGGTAAAGCCCAGTTCAGAAATAATCGACACTTCGATCTTACACACCCCAACACCTCCACACAATTCCATCCTAACTTCCAGGGAGCTAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACGTCGACTGGGGTGTATTTCAGATCGACGGGAGATCTGCTAGAGGTGGTCAGCAGACAGCTAACGATGCAGCTGCTGAAGCCTTGAACGCAGGTTCGAAACAGGCAGCAATGGCAATAATAAGGGAAAAACTTCCCAAGGAATATATTTTTCAATTTCATAATTTAAATGCTAACTTAGATAGGATCTTTGCACCTCCTCTAGAGGTTTTTGTTTGTCCCTTTTCATCTTCTTCATTTGATCAAGTTCCAGAAGAACTCCAAGCATGGGCTGCTGAAAATGTAAGGGATGCCGCTGCGCGGCCATGGAGACCCAATAGTATTGTAATAGAGGGGGAGAGTCGTACAGGCAAAACAATGTGGGCTCGATCATTGGGCCTCCATAATTATCTCTGTGGACATCTAGACTTGAGCCCCAAGGTATACAACAATGACGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCACTTTAAAGAGTTTATGGGGGCCCAGAGGAACTGGCAAAGCAACACTAAGTACGGAAAGCCAATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCTGGTCCTACCTCGTCATATAAAGAATACCTTGACGAGGACAAAAATAATGCATTGAAATCTTGGGCACTAAAAAATGCGACCTTCGTCACCATCAACGGGCCACTCTACTCAAGTTCCACAGAAGATACTGCACCAAATTGCGAAGAAGAAAATAATCCGCCGGAGACGTATTGA
Protein Sequence MPRSYSFQVKAKNIFLTYPKCPIPKEEALELLKNIQCPSDKLFIRVAQEKHSDGSLHLHVLIQFKGKAQFRNNRHFDLTHPNTSTQFHPNFQGAKSSSDVKSYIEKDGDYVDWGVFQIDGRSARGGQQTANDAAAEALNAGSKQAAMAIIREKLPKEYIFQFHNLNANLDRIFAPPLEVFVCPFSSSSFDQVPEELQAWAAENVRDAAARPWRPNSIVIEGESRTGKTMWARSLGLHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRNWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNNALKSWALKNATFVTINGPLYSSSTEDTAPNCEEENNPPETY

References More References in PubMed

1

Genotyping-by-sequencing-based QTL mapping reveals novel loci for Pepper yellow leaf curl virus (PepYLCV) resistance in Capsicum annuum.

Siddique MI, et al.  PLoS One. 2022 Feb 17;17(2):e0264026. doi: 10.1371/journal.pone.0264026. eCollection 2022.

PMID: 35176091
2

Molecular Characterization of Pepper yellow leaf curl Indonesia virus in Leaf Curl and Yellowing Diseased Tomato and Pepper in Indonesia.

Tsai WS, et al.  Plant Dis. 2006 Feb;90(2):247. doi: 10.1094/PD-90-0247B.

PMID: 30786428
3

Identification of begomoviruses associated with the insect vector Bemisia tabaci and various host plants on Java Island, Indonesia.

Lestari SM, et al.  Arch Insect Biochem Physiol. 2023 Feb;112(2):e21984. doi: 10.1002/arch.21984. Epub 2022 Nov 17.

PMID: 36397643