Pepper yellow leaf curl Indonesia virus 2
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_004787615.1 |
| Isolate |
Indonesia |
| Release date |
2021/6/1 |
| Submitter |
Jamsari,J., Ferita,I., Noverta,A., Husada,E.D., Herberg,F.W., Nellen,W., Syukriani,L. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TATTACCGGATGGCCGCGATTTTTTTTAAACGTGGTCCCATAAGCCAACCTTTTGACTGACCAATGGCGTTGCGTCTGAAAAGCTTAGTTAGTGCGTAGCGCACTATAAAGAGAGGGACCACGCTCCACTATCTAAAGATGTGGGATCCGCTTGTGCATCCGTTTCCAGAAACCCTACATGGATTTCGATGCATGTTGGCGATCAAGTATCTGCAAAGCTTAGAGGCTACGTATTCTCCTGATACGGTTGGAGGTGAATTCGTGAAGGATTTGATCTGTTTGCTGCGGTGTAAAAACTATGCCGAAGCGTTCCATCGATACAGTGTCGTCGTTGCCAATGTCTATAACACGCCGGAGACTAAACTACGCGAGTCAGTACAGTCTCCCTGCTGCTGCCCCCACTGCCCCAGGCATGTCTTACAAACGAAGAGCGTGGGTAAATCGGCCTATGAATCGGAAACCCAGATTCTACAGGGGTCGAAGGACCAGTGATGTTCCACGGGGTTGTGAAGGACCTTGTAAGGTCCAATCCTTTGAACAGAGACATGACGTAACACATACTGGGAAGGTCCTCTGTGTTTCGGATGTCACGAGAGGTGGTGGTATTACGCACAGAGTAGGTAAAAGATTCTGTGTGAAATCTGTATATATTATTGGCAAAGTATGGATGGACGAGAACATCAAGTCGAAGAACCACACTAACAACGTCATGTTTTGGCTTGTTCGTGACCGGCGACCAGTTACAACTCCTTATGGCTTCGGTGAGTTGTTCAACATGTATGATAATGAACCCAGCACAGCAACTATCAAGAACGATCTTCGTGATCGTGTTCAGGTGTTACACCGTTTCTCAGCCACGGTGACAGGTGGTCAGTATGCAAGCAAGGAACAAGCAATCGTGAAGAGATTTTTTAGAGTTAACAACTATGTTGTTTACAATCACCAGGAAGCAGCAAAATATGAAAATCACACTGAAAATGCATTGTTATTGTATATGGCATGTACTCATGCATCTAATCCTGTATACGCGACATTGAAAATTCGTATTTACTTCTACGACAATGTAACAAATTAATAAAGCTTGAATTTTATTATGTGCAATTGCTCTGCGTACACAGTCTGTTCAAGTACATCCCACAAAACATAATTCACAGCTCTAATTACATTGTTTATCGACACGACGCCTATATTGGACAGATATCTAAGTACATTGTTCTTAAATACTCTTAAGAAATGCCAAATCTGAGGACGTAAACGAGTCCAGATGTGGAAGATTAAAAAACACTTGTGAATCCCCAGCGCTTTCCTCAGGTTGTGGTTGAACTGGATTTGTACTTCTATGTAGTCCATGTCGGTGTTGTACCCTCTGCTGCTGTGCCTCAGCACCTTGAAATAGAGGGGATTTGGAACCTTCCAAATATAGACGCCATTCTGCGCCTGAGCTGCAGTGATGTACTCCCCGGTGCGAAAATCCATATCCATGACAGTTGATACTGAGGTAATATGAGCAGCCGCAGTCTAAGTCAATACGTCTCCGGCGGATTATTTTCTTCTTCGCAATTTGGTGCAGTATCTTCTGTGGAACTTGAGTAGAGTGGCCCGTTGATGGTGACGAAGGTCGCATTTTTTAGTGCCCAAGATTTCAATGCATTATTTTTGTCCTCGTCAAGGTATTCTTTATATGACGAGGTAGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATTGTTGTATACCTTGGGGCTCAAGTCTAGATGTCCACAGAGATAATTATGGAGGCCCAATGATCGAGCCCACATTGTTTTGCCTGTACGACTCTCCCCCTCTATTACAATACTATTGGGTCTCCATGGCCGCGCAGCGGCATCCCTTACATTTTCAGCAGCCCATGCTTGGAGTTCTTCTGGAACTTGATCAAATGAAGAAGATGAAAAGGGACAAACAAAAACCTCTAGAGGAGGTGCAAAGATCCTATCTAAGTTAGCATTTAAATTATGAAATTGAAAAATATATTCCTTGGGAAGTTTTTCCCTTATTATTGCCATTGCTGCCTGTTTCGAACCTGCGTTCAAGGCTTCAGCAGCTGCATCGTTAGCTGTCTGCTGACCACCTCTAGCAGATCTCCCGTCGATCTGAAATACACCCCAGTCGACGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGCTCCCTGGAAGTTAGGATGGAATTGTGTGGAGGTGTTGGGGTGTGTAAGATCGAAGTGTCGATTATTTCTGAACTGGGCTTTACCTTTGAATTGTATGAGTACGTGGAGATGCAGAGACCCATCAGAATGTTTCTCTTGCGCGACTCTGATAAATAATTTATCAGAAGGACACTGTATATTTTTAAGAAGCTCAAGTGCTTCTTCTTTGGGAATAGGGCATTTGGGATATGTAAGGAATATGTTTTTGGCTTTTACTTGAAATGAATATGACCGAGGCATGTTTGACTCGTCAATTGGGAGCTCTCAAACTTCTACGGAATGGGGTGCTCTGGGAGCTCATTTATACCGAGCTCCCAAATGGCATAATTGTAATTTGCAGAAGAAATTCAAAATTCAAAAGCGGCCATCCGTATAA
Gene Information
|
NCBI Accession
|
YP_010084713.1
|
|
Location
|
139-492 |
|
Gene Name
|
V1 |
|
Protein Name
|
putative precoat protein |
|
Coding Region
|
ATGTGGGATCCGCTTGTGCATCCGTTTCCAGAAACCCTACATGGATTTCGATGCATGTTGGCGATCAAGTATCTGCAAAGCTTAGAGGCTACGTATTCTCCTGATACGGTTGGAGGTGAATTCGTGAAGGATTTGATCTGTTTGCTGCGGTGTAAAAACTATGCCGAAGCGTTCCATCGATACAGTGTCGTCGTTGCCAATGTCTATAACACGCCGGAGACTAAACTACGCGAGTCAGTACAGTCTCCCTGCTGCTGCCCCCACTGCCCCAGGCATGTCTTACAAACGAAGAGCGTGGGTAAATCGGCCTATGAATCGGAAACCCAGATTCTACAGGGGTCGAAGGACCAGTGA |
|
Protein Sequence
|
MWDPLVHPFPETLHGFRCMLAIKYLQSLEATYSPDTVGGEFVKDLICLLRCKNYAEAFHRYSVVVANVYNTPETKLRESVQSPCCCPHCPRHVLQTKSVGKSAYESETQILQGSKDQ |
|
NCBI Accession
|
YP_010084714.1
|
|
Location
|
299-1075 |
|
Gene Name
|
V2 |
|
Protein Name
|
putative coat protein |
|
Coding Region
|
ATGCCGAAGCGTTCCATCGATACAGTGTCGTCGTTGCCAATGTCTATAACACGCCGGAGACTAAACTACGCGAGTCAGTACAGTCTCCCTGCTGCTGCCCCCACTGCCCCAGGCATGTCTTACAAACGAAGAGCGTGGGTAAATCGGCCTATGAATCGGAAACCCAGATTCTACAGGGGTCGAAGGACCAGTGATGTTCCACGGGGTTGTGAAGGACCTTGTAAGGTCCAATCCTTTGAACAGAGACATGACGTAACACATACTGGGAAGGTCCTCTGTGTTTCGGATGTCACGAGAGGTGGTGGTATTACGCACAGAGTAGGTAAAAGATTCTGTGTGAAATCTGTATATATTATTGGCAAAGTATGGATGGACGAGAACATCAAGTCGAAGAACCACACTAACAACGTCATGTTTTGGCTTGTTCGTGACCGGCGACCAGTTACAACTCCTTATGGCTTCGGTGAGTTGTTCAACATGTATGATAATGAACCCAGCACAGCAACTATCAAGAACGATCTTCGTGATCGTGTTCAGGTGTTACACCGTTTCTCAGCCACGGTGACAGGTGGTCAGTATGCAAGCAAGGAACAAGCAATCGTGAAGAGATTTTTTAGAGTTAACAACTATGTTGTTTACAATCACCAGGAAGCAGCAAAATATGAAAATCACACTGAAAATGCATTGTTATTGTATATGGCATGTACTCATGCATCTAATCCTGTATACGCGACATTGAAAATTCGTATTTACTTCTACGACAATGTAACAAATTAA |
|
Protein Sequence
|
MPKRSIDTVSSLPMSITRRRLNYASQYSLPAAAPTAPGMSYKRRAWVNRPMNRKPRFYRGRRTSDVPRGCEGPCKVQSFEQRHDVTHTGKVLCVSDVTRGGGITHRVGKRFCVKSVYIIGKVWMDENIKSKNHTNNVMFWLVRDRRPVTTPYGFGELFNMYDNEPSTATIKNDLRDRVQVLHRFSATVTGGQYASKEQAIVKRFFRVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDNVTN |
|
NCBI Accession
|
YP_010084715.1
|
|
Location
|
1072-1476 |
|
Gene Name
|
C3 |
|
Protein Name
|
putative replication enhancer protein |
|
Coding Region
|
ATGGATTTTCGCACCGGGGAGTACATCACTGCAGCTCAGGCGCAGAATGGCGTCTATATTTGGAAGGTTCCAAATCCCCTCTATTTCAAGGTGCTGAGGCACAGCAGCAGAGGGTACAACACCGACATGGACTACATAGAAGTACAAATCCAGTTCAACCACAACCTGAGGAAAGCGCTGGGGATTCACAAGTGTTTTTTAATCTTCCACATCTGGACTCGTTTACGTCCTCAGATTTGGCATTTCTTAAGAGTATTTAAGAACAATGTACTTAGATATCTGTCCAATATAGGCGTCGTGTCGATAAACAATGTAATTAGAGCTGTGAATTATGTTTTGTGGGATGTACTTGAACAGACTGTGTACGCAGAGCAATTGCACATAATAAAATTCAAGCTTTATTAA |
|
Protein Sequence
|
MDFRTGEYITAAQAQNGVYIWKVPNPLYFKVLRHSSRGYNTDMDYIEVQIQFNHNLRKALGIHKCFLIFHIWTRLRPQIWHFLRVFKNNVLRYLSNIGVVSINNVIRAVNYVLWDVLEQTVYAEQLHIIKFKLY |
|
NCBI Accession
|
YP_010084716.1
|
|
Location
|
1217-1624 |
|
Gene Name
|
C2 |
|
Protein Name
|
putative trans activator protein |
|
Coding Region
|
ATGCGACCTTCGTCACCATCAACGGGCCACTCTACTCAAGTTCCACAGAAGATACTGCACCAAATTGCGAAGAAGAAAATAATCCGCCGGAGACGTATTGACTTAGACTGCGGCTGCTCATATTACCTCAGTATCAACTGTCATGGATATGGATTTTCGCACCGGGGAGTACATCACTGCAGCTCAGGCGCAGAATGGCGTCTATATTTGGAAGGTTCCAAATCCCCTCTATTTCAAGGTGCTGAGGCACAGCAGCAGAGGGTACAACACCGACATGGACTACATAGAAGTACAAATCCAGTTCAACCACAACCTGAGGAAAGCGCTGGGGATTCACAAGTGTTTTTTAATCTTCCACATCTGGACTCGTTTACGTCCTCAGATTTGGCATTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MRPSSPSTGHSTQVPQKILHQIAKKKIIRRRRIDLDCGCSYYLSINCHGYGFSHRGVHHCSSGAEWRLYLEGSKSPLFQGAEAQQQRVQHRHGLHRSTNPVQPQPEESAGDSQVFFNLPHLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_010084717.1
|
|
Location
|
1524-2612 |
|
Gene Name
|
C1 |
|
Protein Name
|
putative replicase protein |
|
Coding Region
|
ATGCCTCGGTCATATTCATTTCAAGTAAAAGCCAAAAACATATTCCTTACATATCCCAAATGCCCTATTCCCAAAGAAGAAGCACTTGAGCTTCTTAAAAATATACAGTGTCCTTCTGATAAATTATTTATCAGAGTCGCGCAAGAGAAACATTCTGATGGGTCTCTGCATCTCCACGTACTCATACAATTCAAAGGTAAAGCCCAGTTCAGAAATAATCGACACTTCGATCTTACACACCCCAACACCTCCACACAATTCCATCCTAACTTCCAGGGAGCTAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACGTCGACTGGGGTGTATTTCAGATCGACGGGAGATCTGCTAGAGGTGGTCAGCAGACAGCTAACGATGCAGCTGCTGAAGCCTTGAACGCAGGTTCGAAACAGGCAGCAATGGCAATAATAAGGGAAAAACTTCCCAAGGAATATATTTTTCAATTTCATAATTTAAATGCTAACTTAGATAGGATCTTTGCACCTCCTCTAGAGGTTTTTGTTTGTCCCTTTTCATCTTCTTCATTTGATCAAGTTCCAGAAGAACTCCAAGCATGGGCTGCTGAAAATGTAAGGGATGCCGCTGCGCGGCCATGGAGACCCAATAGTATTGTAATAGAGGGGGAGAGTCGTACAGGCAAAACAATGTGGGCTCGATCATTGGGCCTCCATAATTATCTCTGTGGACATCTAGACTTGAGCCCCAAGGTATACAACAATGACGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCACTTTAAAGAGTTTATGGGGGCCCAGAGGAACTGGCAAAGCAACACTAAGTACGGAAAGCCAATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCTGGTCCTACCTCGTCATATAAAGAATACCTTGACGAGGACAAAAATAATGCATTGAAATCTTGGGCACTAAAAAATGCGACCTTCGTCACCATCAACGGGCCACTCTACTCAAGTTCCACAGAAGATACTGCACCAAATTGCGAAGAAGAAAATAATCCGCCGGAGACGTATTGA |
|
Protein Sequence
|
MPRSYSFQVKAKNIFLTYPKCPIPKEEALELLKNIQCPSDKLFIRVAQEKHSDGSLHLHVLIQFKGKAQFRNNRHFDLTHPNTSTQFHPNFQGAKSSSDVKSYIEKDGDYVDWGVFQIDGRSARGGQQTANDAAAEALNAGSKQAAMAIIREKLPKEYIFQFHNLNANLDRIFAPPLEVFVCPFSSSSFDQVPEELQAWAAENVRDAAARPWRPNSIVIEGESRTGKTMWARSLGLHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRNWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNNALKSWALKNATFVTINGPLYSSSTEDTAPNCEEENNPPETY |