Pepper leaf curl Yunnan virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000879915.1 |
| Isolate |
China |
| Release date |
2015/2/22 |
| Submitter |
Ding,M., Yue,N., Zhang,Z. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTTACAGTGGTCCCCTCCATGTTTGCGTTTGTCCAATGGAATGCGCTCCTCAAAGCTTATTTATGGAATGGTCCCCTATAAAACTTAGCCCCCAAGTATTAACTTTAAACATGTGGGATCCATTGCTTAATGAGTTCCCCGACACCGTACATGGGTTCAGGTGTATGCTTGCAATAAAATACTTGCAGCTTGTAGAAAATACGTATTCGCCGGATACGTTGGGTTACGATCTCATACGGGATCTTATCTTGGTTATACGTGCCAGGGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCCTCCAAGGTGCGTCGCCGTCTGAACTTCGACAGCCCTTACACACGTCGTGCTGCTGTCCCCACTGTCCGCGTCACCAGAAGACAAATATGGACCAACAGGCCCATGTATCGAAAACCCACGATGTACCGGATGTACAGAAGCCCTGATGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTGCAGTCCTATGAGGCCCGTCATGATGTGTCCCATACCGGTAAGGTCATATGTGTCACGGATGTTACACGTGGTAATGGTATTACGCATCGAGTTGGTAAGAGGTTTTGTGTCAAATCCATTTACGTCATTGGGAAGATATGGATGGATGAAAATATTAAATTGAAAAATCACACCAATACAGTTATGTTTTTTTTAGTTAGAGATCGGCGTCCGAGTGGTACTCCGATGGATTTTCAGCAGGTGTTTAATTGTTATGACAACGAGCCAAGCACCGGTACTGTGAAGAATGATATCAGAGACAGGTTTCAAGTGATTCGCAAGTTCAATTATATGGTTACTGGTGGGCAATATGCGTCTAAAGAACAGGCATTAGTGAAGAAATTCATGCGGGTTAATACCCATGTTGTGTATAATCATCAAGAACAGGCGAAGTATGAAAATCATACTGAGAATGCATTATTGTTGTATATGGTGTCTACTCATGCGAGTAATCCTGTATATGCGACTTTGAAAGTCCGCATCTATTTCTATGATTCACAAATGAATTAATAAATATTGAATTTTATATCATGATTTTCAATTACATCTATTGTTCCATTCAATACATCGTATAATACATATCTAAAAGCCCTAATACAATTGTTAATGCTAATCACGCCTAATCTATCTAAATATTTAAGAAATTGGTATTTAAATACTCTTAAGAAACGCGAGGTCTGAGGATGTAAATGAGTCCAGATTTGGCAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAATTGGACTTGTAATGTGATGATGTCGTGTTTCCTCAGAAATGGTCTCTCGTGGTGTTTGGTTATCTTGAAATATAGGGGATTTTTGACCGTCCAGATATACACGCCATTCTCTGATTGAGTTGCAGTGAGTAGTTCCCCGGTGCGTGAATCCATGATTGTGACAGCCTAAAGCAACGAAGTATGAACAGCCACAAGGTAGATCAACTCGTCGTCGTCTGGTTGTCTTCTTGGCAATTCTGTGTTGCACCTTGATAGGAACCTGAGTAGAGTGGCCCGTTGAGGGTGACGAATTGTGCATTTTTTAAAGCCCAATCTTTGAGTGCGGAATTCTTTTCCTCTTCTAGATACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTATACCATGCATCATTCCTGTATACCTTTGGACTGAGATCCAAATGTCCGCACAGATAATTATGTAGTCCTAATGACCTGGCCCACATAGTCTTCCCCGTTCTACTATCACCCTCTATGACTATACTTATCGGTCTTAAAGGCCGCGCAGCGGCATCCCTTACATTATCGGAAACCCATTCTTCAAGTTCTTCTGGAACTTGATCAAACGATGAAGATAAAAAAGGACAACTAAAAATCTCTAATGGAGGTGCAAAAATCCTATCTAAATTGGAATTTAAATTATGAAATTGTAATACATAATCCTTGGGGGCTAATTCTTTAATTACATTAAGAGCCTCTGACTTACTGCTGCTGTTAAGCGCCTTGGCGTAAGCGTCGTTGGCTGATTGCTGTCCCCCTCTTGCAGATCTTGCATCGATTTGAAACTCTCCCCAATCGATGATGTCTCCGTCTTTCTTGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTGGCATTTGTATTTTCCTTCGAATTGGATAAGCACGTGGAGATGAGGAGACCCATCGTCGTGAAGCTCTCTGCAGATTCTGATATATTTCTTGTTAGTTGGGGTGACTAGGTTTTGTAATTGGGAAAGTGCGTCTTCTTTGGAGAGAGAACACTTGGGATAAGTGATGAAATAGTTTTTAGCATATATTTGGAAACGTTTAGGAGGAGCCATTTGACTGGTCAATCGGTACTCAACAAACTTGGCTATGCAATCGGTGATTGGTACTCAATATATAGTTGAGTACCAAATGGCATAATTGTAATTGCCAAAAGAAATTCAAAATTCAAAATTGAAATCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_001856211.1
|
|
Location
|
132-479 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCATTGCTTAATGAGTTCCCCGACACCGTACATGGGTTCAGGTGTATGCTTGCAATAAAATACTTGCAGCTTGTAGAAAATACGTATTCGCCGGATACGTTGGGTTACGATCTCATACGGGATCTTATCTTGGTTATACGTGCCAGGGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCCTCCAAGGTGCGTCGCCGTCTGAACTTCGACAGCCCTTACACACGTCGTGCTGCTGTCCCCACTGTCCGCGTCACCAGAAGACAAATATGGACCAACAGGCCCATGTATCGAAAACCCACGATGTACCGGATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPDTVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHTRLQGASPSELRQPLHTSCCCPHCPRHQKTNMDQQAHVSKTHDVPDVQKP |
|
NCBI Accession
|
YP_001856212.1
|
|
Location
|
292-1062 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCCTCCAAGGTGCGTCGCCGTCTGAACTTCGACAGCCCTTACACACGTCGTGCTGCTGTCCCCACTGTCCGCGTCACCAGAAGACAAATATGGACCAACAGGCCCATGTATCGAAAACCCACGATGTACCGGATGTACAGAAGCCCTGATGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTGCAGTCCTATGAGGCCCGTCATGATGTGTCCCATACCGGTAAGGTCATATGTGTCACGGATGTTACACGTGGTAATGGTATTACGCATCGAGTTGGTAAGAGGTTTTGTGTCAAATCCATTTACGTCATTGGGAAGATATGGATGGATGAAAATATTAAATTGAAAAATCACACCAATACAGTTATGTTTTTTTTAGTTAGAGATCGGCGTCCGAGTGGTACTCCGATGGATTTTCAGCAGGTGTTTAATTGTTATGACAACGAGCCAAGCACCGGTACTGTGAAGAATGATATCAGAGACAGGTTTCAAGTGATTCGCAAGTTCAATTATATGGTTACTGGTGGGCAATATGCGTCTAAAGAACAGGCATTAGTGAAGAAATTCATGCGGGTTAATACCCATGTTGTGTATAATCATCAAGAACAGGCGAAGTATGAAAATCATACTGAGAATGCATTATTGTTGTATATGGTGTCTACTCATGCGAGTAATCCTGTATATGCGACTTTGAAAGTCCGCATCTATTTCTATGATTCACAAATGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYTRRAAVPTVRVTRRQIWTNRPMYRKPTMYRMYRSPDVPKGCEGPCKVQSYEARHDVSHTGKVICVTDVTRGNGITHRVGKRFCVKSIYVIGKIWMDENIKLKNHTNTVMFFLVRDRRPSGTPMDFQQVFNCYDNEPSTGTVKNDIRDRFQVIRKFNYMVTGGQYASKEQALVKKFMRVNTHVVYNHQEQAKYENHTENALLLYMVSTHASNPVYATLKVRIYFYDSQMN |
|
NCBI Accession
|
YP_001856213.1
|
|
Location
|
1059-1463 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACTACTCACTGCAACTCAATCAGAGAATGGCGTGTATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAACCAAACACCACGAGAGACCATTTCTGAGGAAACACGACATCATCACATTACAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCATTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAAATACCAATTTCTTAAATATTTAGATAGATTAGGCGTGATTAGCATTAACAATTGTATTAGGGCTTTTAGATATGTATTATACGATGTATTGAATGGAACAATAGATGTAATTGAAAATCATGATATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGELLTATQSENGVYIWTVKNPLYFKITKHHERPFLRKHDIITLQVQFNYNLRKALGIHKCFLTCQIWTHLHPQTSRFLRVFKYQFLKYLDRLGVISINNCIRAFRYVLYDVLNGTIDVIENHDIKFNIY |
|
NCBI Accession
|
YP_001856214.1
|
|
Location
|
1204-1608 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCACAATTCGTCACCCTCAACGGGCCACTCTACTCAGGTTCCTATCAAGGTGCAACACAGAATTGCCAAGAAGACAACCAGACGACGACGAGTTGATCTACCTTGTGGCTGTTCATACTTCGTTGCTTTAGGCTGTCACAATCATGGATTCACGCACCGGGGAACTACTCACTGCAACTCAATCAGAGAATGGCGTGTATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAACCAAACACCACGAGAGACCATTTCTGAGGAAACACGACATCATCACATTACAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCATTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MHNSSPSTGHSTQVPIKVQHRIAKKTTRRRRVDLPCGCSYFVALGCHNHGFTHRGTTHCNSIREWRVYLDGQKSPIFQDNQTPRETISEETRHHHITSPIQLQPEESVGDTQMFSNLPNLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_001856215.1
|
|
Location
|
1511-2596 |
|
Gene Name
|
AC1 |
|
Protein Name
|
Rep protein |
|
Coding Region
|
ATGGCTCCTCCTAAACGTTTCCAAATATATGCTAAAAACTATTTCATCACTTATCCCAAGTGTTCTCTCTCCAAAGAAGACGCACTTTCCCAATTACAAAACCTAGTCACCCCAACTAACAAGAAATATATCAGAATCTGCAGAGAGCTTCACGACGATGGGTCTCCTCATCTCCACGTGCTTATCCAATTCGAAGGAAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCAAGAAAGACGGAGACATCATCGATTGGGGAGAGTTTCAAATCGATGCAAGATCTGCAAGAGGGGGACAGCAATCAGCCAACGACGCTTACGCCAAGGCGCTTAACAGCAGCAGTAAGTCAGAGGCTCTTAATGTAATTAAAGAATTAGCCCCCAAGGATTATGTATTACAATTTCATAATTTAAATTCCAATTTAGATAGGATTTTTGCACCTCCATTAGAGATTTTTAGTTGTCCTTTTTTATCTTCATCGTTTGATCAAGTTCCAGAAGAACTTGAAGAATGGGTTTCCGATAATGTAAGGGATGCCGCTGCGCGGCCTTTAAGACCGATAAGTATAGTCATAGAGGGTGATAGTAGAACGGGGAAGACTATGTGGGCCAGGTCATTAGGACTACATAATTATCTGTGCGGACATTTGGATCTCAGTCCAAAGGTATACAGGAATGATGCATGGTATAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAATTCAAATTAAAGGTGGAATTCCAACTATCTTCCTTTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTATCTAGAAGAGGAAAAGAATTCCGCACTCAAAGATTGGGCTTTAAAAAATGCACAATTCGTCACCCTCAACGGGCCACTCTACTCAGGTTCCTATCAAGGTGCAACACAGAATTGCCAAGAAGACAACCAGACGACGACGAGTTGA |
|
Protein Sequence
|
MAPPKRFQIYAKNYFITYPKCSLSKEDALSQLQNLVTPTNKKYIRICRELHDDGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIKKDGDIIDWGEFQIDARSARGGQQSANDAYAKALNSSSKSEALNVIKELAPKDYVLQFHNLNSNLDRIFAPPLEIFSCPFLSSSFDQVPEELEEWVSDNVRDAAARPLRPISIVIEGDSRTGKTMWARSLGLHNYLCGHLDLSPKVYRNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALKDWALKNAQFVTLNGPLYSGSYQGATQNCQEDNQTTTS |
|
NCBI Accession
|
YP_001856216.1
|
|
Location
|
2149-2439 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTCCTCATCTCCACGTGCTTATCCAATTCGAAGGAAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCAAGAAAGACGGAGACATCATCGATTGGGGAGAGTTTCAAATCGATGCAAGATCTGCAAGAGGGGGACAGCAATCAGCCAACGACGCTTACGCCAAGGCGCTTAACAGCAGCAGTAAGTCAGAGGCTCTTAATGTAA |
|
Protein Sequence
|
MGLLISTCLSNSKENTNARITDSSTWYPQPGQHISIQTFRELNPAPTSSPISRKTETSSIGESFKSMQDLQEGDSNQPTTLTPRRLTAAVSQRLLM |