Pepper leaf curl Yunnan virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000879915.1
Isolate China
Release date 2015/2/22
Submitter Ding,M., Yue,N., Zhang,Z.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_010618
ACCGGATGGCCGCGCGATTTTTTTACAGTGGTCCCCTCCATGTTTGCGTTTGTCCAATGGAATGCGCTCCTCAAAGCTTATTTATGGAATGGTCCCCTATAAAACTTAGCCCCCAAGTATTAACTTTAAACATGTGGGATCCATTGCTTAATGAGTTCCCCGACACCGTACATGGGTTCAGGTGTATGCTTGCAATAAAATACTTGCAGCTTGTAGAAAATACGTATTCGCCGGATACGTTGGGTTACGATCTCATACGGGATCTTATCTTGGTTATACGTGCCAGGGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCCTCCAAGGTGCGTCGCCGTCTGAACTTCGACAGCCCTTACACACGTCGTGCTGCTGTCCCCACTGTCCGCGTCACCAGAAGACAAATATGGACCAACAGGCCCATGTATCGAAAACCCACGATGTACCGGATGTACAGAAGCCCTGATGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTGCAGTCCTATGAGGCCCGTCATGATGTGTCCCATACCGGTAAGGTCATATGTGTCACGGATGTTACACGTGGTAATGGTATTACGCATCGAGTTGGTAAGAGGTTTTGTGTCAAATCCATTTACGTCATTGGGAAGATATGGATGGATGAAAATATTAAATTGAAAAATCACACCAATACAGTTATGTTTTTTTTAGTTAGAGATCGGCGTCCGAGTGGTACTCCGATGGATTTTCAGCAGGTGTTTAATTGTTATGACAACGAGCCAAGCACCGGTACTGTGAAGAATGATATCAGAGACAGGTTTCAAGTGATTCGCAAGTTCAATTATATGGTTACTGGTGGGCAATATGCGTCTAAAGAACAGGCATTAGTGAAGAAATTCATGCGGGTTAATACCCATGTTGTGTATAATCATCAAGAACAGGCGAAGTATGAAAATCATACTGAGAATGCATTATTGTTGTATATGGTGTCTACTCATGCGAGTAATCCTGTATATGCGACTTTGAAAGTCCGCATCTATTTCTATGATTCACAAATGAATTAATAAATATTGAATTTTATATCATGATTTTCAATTACATCTATTGTTCCATTCAATACATCGTATAATACATATCTAAAAGCCCTAATACAATTGTTAATGCTAATCACGCCTAATCTATCTAAATATTTAAGAAATTGGTATTTAAATACTCTTAAGAAACGCGAGGTCTGAGGATGTAAATGAGTCCAGATTTGGCAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAATTGGACTTGTAATGTGATGATGTCGTGTTTCCTCAGAAATGGTCTCTCGTGGTGTTTGGTTATCTTGAAATATAGGGGATTTTTGACCGTCCAGATATACACGCCATTCTCTGATTGAGTTGCAGTGAGTAGTTCCCCGGTGCGTGAATCCATGATTGTGACAGCCTAAAGCAACGAAGTATGAACAGCCACAAGGTAGATCAACTCGTCGTCGTCTGGTTGTCTTCTTGGCAATTCTGTGTTGCACCTTGATAGGAACCTGAGTAGAGTGGCCCGTTGAGGGTGACGAATTGTGCATTTTTTAAAGCCCAATCTTTGAGTGCGGAATTCTTTTCCTCTTCTAGATACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTATACCATGCATCATTCCTGTATACCTTTGGACTGAGATCCAAATGTCCGCACAGATAATTATGTAGTCCTAATGACCTGGCCCACATAGTCTTCCCCGTTCTACTATCACCCTCTATGACTATACTTATCGGTCTTAAAGGCCGCGCAGCGGCATCCCTTACATTATCGGAAACCCATTCTTCAAGTTCTTCTGGAACTTGATCAAACGATGAAGATAAAAAAGGACAACTAAAAATCTCTAATGGAGGTGCAAAAATCCTATCTAAATTGGAATTTAAATTATGAAATTGTAATACATAATCCTTGGGGGCTAATTCTTTAATTACATTAAGAGCCTCTGACTTACTGCTGCTGTTAAGCGCCTTGGCGTAAGCGTCGTTGGCTGATTGCTGTCCCCCTCTTGCAGATCTTGCATCGATTTGAAACTCTCCCCAATCGATGATGTCTCCGTCTTTCTTGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTGGCATTTGTATTTTCCTTCGAATTGGATAAGCACGTGGAGATGAGGAGACCCATCGTCGTGAAGCTCTCTGCAGATTCTGATATATTTCTTGTTAGTTGGGGTGACTAGGTTTTGTAATTGGGAAAGTGCGTCTTCTTTGGAGAGAGAACACTTGGGATAAGTGATGAAATAGTTTTTAGCATATATTTGGAAACGTTTAGGAGGAGCCATTTGACTGGTCAATCGGTACTCAACAAACTTGGCTATGCAATCGGTGATTGGTACTCAATATATAGTTGAGTACCAAATGGCATAATTGTAATTGCCAAAAGAAATTCAAAATTCAAAATTGAAATCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_001856211.1
Location 132-479
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCATTGCTTAATGAGTTCCCCGACACCGTACATGGGTTCAGGTGTATGCTTGCAATAAAATACTTGCAGCTTGTAGAAAATACGTATTCGCCGGATACGTTGGGTTACGATCTCATACGGGATCTTATCTTGGTTATACGTGCCAGGGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCCTCCAAGGTGCGTCGCCGTCTGAACTTCGACAGCCCTTACACACGTCGTGCTGCTGTCCCCACTGTCCGCGTCACCAGAAGACAAATATGGACCAACAGGCCCATGTATCGAAAACCCACGATGTACCGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDTVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHTRLQGASPSELRQPLHTSCCCPHCPRHQKTNMDQQAHVSKTHDVPDVQKP

NCBI Accession YP_001856212.1
Location 292-1062
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCCTCCAAGGTGCGTCGCCGTCTGAACTTCGACAGCCCTTACACACGTCGTGCTGCTGTCCCCACTGTCCGCGTCACCAGAAGACAAATATGGACCAACAGGCCCATGTATCGAAAACCCACGATGTACCGGATGTACAGAAGCCCTGATGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTGCAGTCCTATGAGGCCCGTCATGATGTGTCCCATACCGGTAAGGTCATATGTGTCACGGATGTTACACGTGGTAATGGTATTACGCATCGAGTTGGTAAGAGGTTTTGTGTCAAATCCATTTACGTCATTGGGAAGATATGGATGGATGAAAATATTAAATTGAAAAATCACACCAATACAGTTATGTTTTTTTTAGTTAGAGATCGGCGTCCGAGTGGTACTCCGATGGATTTTCAGCAGGTGTTTAATTGTTATGACAACGAGCCAAGCACCGGTACTGTGAAGAATGATATCAGAGACAGGTTTCAAGTGATTCGCAAGTTCAATTATATGGTTACTGGTGGGCAATATGCGTCTAAAGAACAGGCATTAGTGAAGAAATTCATGCGGGTTAATACCCATGTTGTGTATAATCATCAAGAACAGGCGAAGTATGAAAATCATACTGAGAATGCATTATTGTTGTATATGGTGTCTACTCATGCGAGTAATCCTGTATATGCGACTTTGAAAGTCCGCATCTATTTCTATGATTCACAAATGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYTRRAAVPTVRVTRRQIWTNRPMYRKPTMYRMYRSPDVPKGCEGPCKVQSYEARHDVSHTGKVICVTDVTRGNGITHRVGKRFCVKSIYVIGKIWMDENIKLKNHTNTVMFFLVRDRRPSGTPMDFQQVFNCYDNEPSTGTVKNDIRDRFQVIRKFNYMVTGGQYASKEQALVKKFMRVNTHVVYNHQEQAKYENHTENALLLYMVSTHASNPVYATLKVRIYFYDSQMN

NCBI Accession YP_001856213.1
Location 1059-1463
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACCGGGGAACTACTCACTGCAACTCAATCAGAGAATGGCGTGTATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAACCAAACACCACGAGAGACCATTTCTGAGGAAACACGACATCATCACATTACAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCATTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAAATACCAATTTCTTAAATATTTAGATAGATTAGGCGTGATTAGCATTAACAATTGTATTAGGGCTTTTAGATATGTATTATACGATGTATTGAATGGAACAATAGATGTAATTGAAAATCATGATATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGELLTATQSENGVYIWTVKNPLYFKITKHHERPFLRKHDIITLQVQFNYNLRKALGIHKCFLTCQIWTHLHPQTSRFLRVFKYQFLKYLDRLGVISINNCIRAFRYVLYDVLNGTIDVIENHDIKFNIY

NCBI Accession YP_001856214.1
Location 1204-1608
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCACAATTCGTCACCCTCAACGGGCCACTCTACTCAGGTTCCTATCAAGGTGCAACACAGAATTGCCAAGAAGACAACCAGACGACGACGAGTTGATCTACCTTGTGGCTGTTCATACTTCGTTGCTTTAGGCTGTCACAATCATGGATTCACGCACCGGGGAACTACTCACTGCAACTCAATCAGAGAATGGCGTGTATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAACCAAACACCACGAGAGACCATTTCTGAGGAAACACGACATCATCACATTACAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCATTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAA
Protein Sequence MHNSSPSTGHSTQVPIKVQHRIAKKTTRRRRVDLPCGCSYFVALGCHNHGFTHRGTTHCNSIREWRVYLDGQKSPIFQDNQTPRETISEETRHHHITSPIQLQPEESVGDTQMFSNLPNLDSFTSSDLAFLKSI

NCBI Accession YP_001856215.1
Location 1511-2596
Gene Name AC1
Protein Name Rep protein
Coding Region ATGGCTCCTCCTAAACGTTTCCAAATATATGCTAAAAACTATTTCATCACTTATCCCAAGTGTTCTCTCTCCAAAGAAGACGCACTTTCCCAATTACAAAACCTAGTCACCCCAACTAACAAGAAATATATCAGAATCTGCAGAGAGCTTCACGACGATGGGTCTCCTCATCTCCACGTGCTTATCCAATTCGAAGGAAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCAAGAAAGACGGAGACATCATCGATTGGGGAGAGTTTCAAATCGATGCAAGATCTGCAAGAGGGGGACAGCAATCAGCCAACGACGCTTACGCCAAGGCGCTTAACAGCAGCAGTAAGTCAGAGGCTCTTAATGTAATTAAAGAATTAGCCCCCAAGGATTATGTATTACAATTTCATAATTTAAATTCCAATTTAGATAGGATTTTTGCACCTCCATTAGAGATTTTTAGTTGTCCTTTTTTATCTTCATCGTTTGATCAAGTTCCAGAAGAACTTGAAGAATGGGTTTCCGATAATGTAAGGGATGCCGCTGCGCGGCCTTTAAGACCGATAAGTATAGTCATAGAGGGTGATAGTAGAACGGGGAAGACTATGTGGGCCAGGTCATTAGGACTACATAATTATCTGTGCGGACATTTGGATCTCAGTCCAAAGGTATACAGGAATGATGCATGGTATAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAATTCAAATTAAAGGTGGAATTCCAACTATCTTCCTTTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTATCTAGAAGAGGAAAAGAATTCCGCACTCAAAGATTGGGCTTTAAAAAATGCACAATTCGTCACCCTCAACGGGCCACTCTACTCAGGTTCCTATCAAGGTGCAACACAGAATTGCCAAGAAGACAACCAGACGACGACGAGTTGA
Protein Sequence MAPPKRFQIYAKNYFITYPKCSLSKEDALSQLQNLVTPTNKKYIRICRELHDDGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIKKDGDIIDWGEFQIDARSARGGQQSANDAYAKALNSSSKSEALNVIKELAPKDYVLQFHNLNSNLDRIFAPPLEIFSCPFLSSSFDQVPEELEEWVSDNVRDAAARPLRPISIVIEGDSRTGKTMWARSLGLHNYLCGHLDLSPKVYRNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALKDWALKNAQFVTLNGPLYSGSYQGATQNCQEDNQTTTS

NCBI Accession YP_001856216.1
Location 2149-2439
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCCTCATCTCCACGTGCTTATCCAATTCGAAGGAAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCAAGAAAGACGGAGACATCATCGATTGGGGAGAGTTTCAAATCGATGCAAGATCTGCAAGAGGGGGACAGCAATCAGCCAACGACGCTTACGCCAAGGCGCTTAACAGCAGCAGTAAGTCAGAGGCTCTTAATGTAA
Protein Sequence MGLLISTCLSNSKENTNARITDSSTWYPQPGQHISIQTFRELNPAPTSSPISRKTETSSIGESFKSMQDLQEGDSNQPTTLTPRRLTAAVSQRLLM

References More References in PubMed

1

Molecular characterization of squash leaf curl Yunnan virus, a new begomovirus and evidence for recombination.

Xie Y, et al.  Arch Virol. 2003 Oct;148(10):2047-54. doi: 10.1007/s00705-003-0153-2.

PMID: 14551824
2

Identification of a novel pepper-infecting monopartite begomovirus in China.

Li P, et al.  Arch Virol. 2021 Jun;166(6):1751-1754. doi: 10.1007/s00705-021-04989-0. Epub 2021 Mar 20.

PMID: 33743050
3

Development and application of triple antibody sandwich enzyme-linked immunosorbent assays for begomovirus detection using monoclonal antibodies against Tomato yellow leaf curl Thailand virus.

Seepiban C, et al.  Virol J. 2017 May 30;14(1):99. doi: 10.1186/s12985-017-0763-z.

PMID: 28558726
4

Incidence and Molecular Identification of Begomoviruses Infecting Tomato and Pepper in Myanmar.

Kwak HR, et al.  Plants (Basel). 2022 Apr 10;11(8):1031. doi: 10.3390/plants11081031.

PMID: 35448759
5

First Report of Tobacco curly shoot virus Infecting Pepper in China.

Qing L, et al.  Plant Dis. 2010 May;94(5):637. doi: 10.1094/PDIS-94-5-0637A.

PMID: 30754455