Pepper leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000838585.1
Release date 2015/2/12
Submitter Chiemsombat,P., Warin,N., Attathom,S., Chatchawankarnpanich,O.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_000882
ACCGGATGGCCGCGATTTTTTTTCAAGTGGTCCCCCCGCGTGCGCTGGACCAATCATAACCATCCCTCAAAGCTTGCATGCCTGCAGGTTATCCCATCAAAACGTGGTCCCCAAGTACTTACATCAAAACATGTGGGATCCTTTACTAAACGAAGTTTCCTGAAAACCGTAACATGGTTTTAAGGTGTATGTTAGCAATTAAGTATTTGCAACTAGTAGAGAATACATACTCTCCTGATACATTAGGCTACGACCTAATACGTGATCTCATCTTGGTTATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTGCGTCGCCGTTTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCTACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGCCAACCGGACCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAACGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCAGATGTCACTCGAGGTAATGGGCTGACACACCGTGTTGGTAAAGGTCCTGTAATCAAGTCTGTTTACGTATGGGGAAGAATTTGGATGGATGAGATATCAAGCCAAGAATCACACCAATCTGTCATGTTTTTTTTAGTTCGGGATAGGAGACCATTTGGTACTCCACAGGACTTCGGTCAGGTGTTCAACATGTATGATAATGAGCCCAGTACTGCGACGGTGAAAAACGATAACAGAGATCGATTTCAAGTCCTTCGTCGTTTCCAGGCAACTGTGACAGGTGGGCAATATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTGAACAATCATGTGACTTACAACCATCAAGAAGCTGCGAAGTATGACAATCACACAGAGAATGCGCTTTTATTGTATATGGCATGTACGCATGCCAGTAATCCAGTGTATGCAACTTTGAAGATCAGAATCTACTTCTACGACTCTGTACAAAATTAATAAATATTGAATTTTATCATTTCTGAAAGACGAGCATCAATGGTGCCCTCCAATACATTGTACAATACATGTCTAATCGCCCTAATTACATTGTTTATACTAATCACTCCTAAATGGTCTAAATACTTGATACATTGATATTTAAATACTCTTAAGAAACGCGAGGTCTGAGGATGTAAACGAGTCCAAATTTGGCAGATTAGAAAGCATTGGTGTAGTCCCCCCGCTTTCCTCAGGTTGTAGTTGAACTGGATTTGCACCGTGATTATGTCGTGGTTCCTCAGGAACGGCCTCTCGTGGTGTTGTGTTATTCTGAAATATAGGGGATTGTTGACCGTCCAGATATATACGCCATTCTCTGCTTGAGCTGCTTGAGCTGCAGTGTGATGTGCCCCTGTGCGTGAATCCATGAGGATGGCAACCTAGAGCGACGAAATATGAACACCCACAAGGGAGATCAACTCGTCTTCGTCTAGTTGTCTTCTTGGCGATTCTGTGTCGCACCTTGATGGGAACCTGAGAAGAGTGGGCCTTCGATGGTGACGAAGATTGCATTCTTTAGAGCCCAATTTTTAAGTGCGGTGTTCTTTTCCTCTTCCAAGAACTCTTTATAGCTTGAATGTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAAGTAATGCGGATCGACGTCATCAATGACGTTATACCAAGGGTCGTTGTTGTACACTTTTGGGCTTAAGTCTAAATGACCACATAAATAGTTATGTGGTCCTAACGACCTGGCCCACATTGTTTTCCCCGTCCTGCTATCACCCTCTACCACTATACTTATCGGTCTTAATGGCCGCGCAGGCTTGACAACGTTTGCAGCAACCCATTCATTTAAGTTCCTCTGGACTTGGTCAAATGAGACCAAAAAGGGGGAAATGTACATTTCTATTCGGAGGCTAAAAATCTTATCTAAATTACTATTTAAATTATGGAATTGTAAAATATAATCTTTTGGGGCCTCTTCTTTCAAAATTGCGAGTGCCGAAGCTTTGGTTCCTGAATTGAGTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCCCCTCGAGCCGATCTTCCATCGATCTGGAAAACCCCATGATCAAGAACGTCTCCGTTTTTTGCGATATATTCTTTGACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCGTGGATTTTTGCATTGGAATTTACCTTCGAATTGGATGAGGATATGCAAGTGAGGAGTCCCATCTTCGTGCAATTCCCTGCAAATCCTGATAAATAGTTTAATTGTAGGGGTTTCTATGGCTTGGATTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCAATGTGGGTATGTGAGGAAATAGTTTTTCGCATTTATTCTTAAATTTTTAGGAGGAGCCATTGACCGGTCAATCGGTGTCTCTCAACTCTCTCCTATGTAATTGGTGTCTGGGGTCTTATTTATATGGAGACCCAATGGCATTATTGTAATTATGGAAAAGTACTTTAATTCAAATACCCAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_050013.1
Location 174-485
Gene Name av2
Protein Name AV2 precoat protein
Coding Region ATGGTTTTAAGGTGTATGTTAGCAATTAAGTATTTGCAACTAGTAGAGAATACATACTCTCCTGATACATTAGGCTACGACCTAATACGTGATCTCATCTTGGTTATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTGCGTCGCCGTTTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCTACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGCCAACCGGACCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGA
Protein Sequence MVLRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRLQGASPFELRQPICQPCCCPYCPRHKQKEVMGQPDHVQKAQDIQDVQKP

NCBI Accession NP_050014.1
Location 295-1065
Gene Name av1
Protein Name AV1 coat protein
Coding Region ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTGCGTCGCCGTTTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCTACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGCCAACCGGACCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAACGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCAGATGTCACTCGAGGTAATGGGCTGACACACCGTGTTGGTAAAGGTCCTGTAATCAAGTCTGTTTACGTATGGGGAAGAATTTGGATGGATGAGATATCAAGCCAAGAATCACACCAATCTGTCATGTTTTTTTTAGTTCGGGATAGGAGACCATTTGGTACTCCACAGGACTTCGGTCAGGTGTTCAACATGTATGATAATGAGCCCAGTACTGCGACGGTGAAAAACGATAACAGAGATCGATTTCAAGTCCTTCGTCGTTTCCAGGCAACTGTGACAGGTGGGCAATATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTGAACAATCATGTGACTTACAACCATCAAGAAGCTGCGAAGTATGACAATCACACAGAGAATGCGCTTTTATTGTATATGGCATGTACGCATGCCAGTAATCCAGTGTATGCAACTTTGAAGATCAGAATCTACTTCTACGACTCTGTACAAAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSWANRTMYRKPRIYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKGPVIKSVYVWGRIWMDEISSQESHQSVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession NP_050015.1
Location 1062-1475
Gene Name ac3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGCACATCACACTGCAGCTCAAGCAGCTCAAGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTATATTTCAGAATAACACAACACCACGAGAGGCCGTTCCTGAGGAACCACGACATAATCACGGTGCAAATCCAGTTCAACTACAACCTGAGGAAAGCGGGGGGACTACACCAATGCTTTCTAATCTGCCAAATTTGGACTCGTTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAAATATCAATGTATCAAGTATTTAGACCATTTAGGAGTGATTAGTATAAACAATGTAATTAGGGCGATTAGACATGTATTGTACAATGTATTGGAGGGCACCATTGATGCTCGTCTTTCAGAAATGATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGAHHTAAQAAQAENGVYIWTVNNPLYFRITQHHERPFLRNHDIITVQIQFNYNLRKAGGLHQCFLICQIWTRLHPQTSRFLRVFKYQCIKYLDHLGVISINNVIRAIRHVLYNVLEGTIDARLSEMIKFNIY

NCBI Accession NP_050016.1
Location 1207-1620
Gene Name ac2
Protein Name AC2 trap protein
Coding Region ATGCAATCTTCGTCACCATCGAAGGCCCACTCTTCTCAGGTTCCCATCAAGGTGCGACACAGAATCGCCAAGAAGACAACTAGACGAAGACGAGTTGATCTCCCTTGTGGGTGTTCATATTTCGTCGCTCTAGGTTGCCATCCTCATGGATTCACGCACAGGGGCACATCACACTGCAGCTCAAGCAGCTCAAGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTATATTTCAGAATAACACAACACCACGAGAGGCCGTTCCTGAGGAACCACGACATAATCACGGTGCAAATCCAGTTCAACTACAACCTGAGGAAAGCGGGGGGACTACACCAATGCTTTCTAATCTGCCAAATTTGGACTCGTTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAA
Protein Sequence MQSSSPSKAHSSQVPIKVRHRIAKKTTRRRRVDLPCGCSYFVALGCHPHGFTHRGTSHCSSSSSSREWRIYLDGQQSPIFQNNTTPREAVPEEPRHNHGANPVQLQPEESGGTTPMLSNLPNLDSFTSSDLAFLKSI

NCBI Accession NP_050017.1
Location 1538-2602
Gene Name ac1
Protein Name AC1 replicase-associated protein
Coding Region ATGGCTCCTCCTAAAAATTTAAGAATAAATGCGAAAAACTATTTCCTCACATACCCACATTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAAATCCAAGCCATAGAAACCCCTACAATTAAACTATTTATCAGGATTTGCAGGGAATTGCACGAAGATGGGACTCCTCACTTGCATATCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAATCCACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGAATATATCGCAAAAAACGGAGACGTTCTTGATCATGGGGTTTTCCAGATCGATGGAAGATCGGCTCGAGGGGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCACTCAATTCAGGAACCAAAGCTTCGGCACTCGCAATTTTGAAAGAAGAGGCCCCAAAAGATTATATTTTACAATTCCATAATTTAAATAGTAATTTAGATAAGATTTTTAGCCTCCGAATAGAAATGTACATTTCCCCCTTTTTGGTCTCATTTGACCAAGTCCAGAGGAACTTAAATGAATGGGTTGCTGCAAACGTTGTCAAGCCTGCGCGGCCATTAAGACCGATAAGTATAGTGGTAGAGGGTGATAGCAGGACGGGGAAAACAATGTGGGCCAGGTCGTTAGGACCACATAACTATTTATGTGGTCATTTAGACTTAAGCCCAAAAGTGTACAACAACGACCCTTGGTATAACGTCATTGATGACGTCGATCCGCATTACTTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACAAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCACATTCAAGCTATAAAGAGTTCTTGGAAGAGGAAAAGAACACCGCACTTAAAAATTGGGCTCTAAAGAATGCAATCTTCGTCACCATCGAAGGCCCACTCTTCTCAGGTTCCCATCAAGGTGCGACACAGAATCGCCAAGAAGACAACTAG
Protein Sequence MAPPKNLRINAKNYFLTYPHCSLTKEEALSQIQAIETPTIKLFIRICRELHEDGTPHLHILIQFEGKFQCKNPRFFDLTSPTRSAHFHPNIQGAKSSTDVKEYIAKNGDVLDHGVFQIDGRSARGGCQSANDAYAEALNSGTKASALAILKEEAPKDYILQFHNLNSNLDKIFSLRIEMYISPFLVSFDQVQRNLNEWVAANVVKPARPLRPISIVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDPWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPHSSYKEFLEEEKNTALKNWALKNAIFVTIEGPLFSGSHQGATQNRQEDN

NCBI Accession NP_050018.1
Location 2152-2445
Gene Name ac4
Protein Name AC4 protein
Coding Region ATGGGACTCCTCACTTGCATATCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAATCCACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGAATATATCGCAAAAAACGGAGACGTTCTTGATCATGGGGTTTTCCAGATCGATGGAAGATCGGCTCGAGGGGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCACTCAATTCAGGAACCAAAGCTTCGGCACTCGCAATTTTGA
Protein Sequence MGLLTCISSSNSKVNSNAKIHDSSTSHPQPGQHISIRTFRELKAQQMSKNISQKTETFLIMGFSRSMEDRLEGVANLPTTHMPRHSIQEPKLRHSQF

References More References in PubMed

1

First Report of Tomato Yellow Leaf Curl Virus Infecting Pepper and Tomato in Oklahoma.

Paslay C, et al.  Plant Dis. 2022 Aug 12. doi: 10.1094/PDIS-04-22-0927-PDN. Online ahead of print.

PMID: 35961018
2

The threat of seed-transmissible pepper yellow leaf curl Indonesia virus in chili pepper.

Fadhila C, et al.  Microb Pathog. 2020 Jun;143:104132. doi: 10.1016/j.micpath.2020.104132. Epub 2020 Mar 10.

PMID: 32169496
3

Pepper yellow leaf curl Aceh virus: a novel bipartite begomovirus isolated from chili pepper, tomato, and tobacco plants in Indonesia.

Kesumawati E, et al.  Arch Virol. 2019 Sep;164(9):2379-2383. doi: 10.1007/s00705-019-04316-8. Epub 2019 Jun 15.

PMID: 31203434
4

Genotyping-by-sequencing-based QTL mapping reveals novel loci for Pepper yellow leaf curl virus (PepYLCV) resistance in Capsicum annuum.

Siddique MI, et al.  PLoS One. 2022 Feb 17;17(2):e0264026. doi: 10.1371/journal.pone.0264026. eCollection 2022.

PMID: 35176091
5

Molecular mapping of dominant gene responsible for leaf curl virus resistance in chilli pepper (Capsicum annuum L.).

Thakur H, et al.  3 Biotech. 2020 Apr;10(4):182. doi: 10.1007/s13205-020-02168-7. Epub 2020 Mar 28.

PMID: 32257738
6

Occurrence of Cotton leaf curl Multan virus and associated betasatellites with leaf curl disease of Bhut-Jolokia chillies (Capsicum chinense Jacq.) in India.

Yogindran S, et al.  Mol Biol Rep. 2021 Mar;48(3):2143-2152. doi: 10.1007/s11033-021-06223-1. Epub 2021 Feb 26.

PMID: 33635470
7

Genetic diversity and distribution of a distinct strain of Chili leaf curl virus and associated betasatellite infecting tomato and pepper in Oman.

Khan AJ, et al.  Virus Res. 2013 Oct;177(1):87-97. doi: 10.1016/j.virusres.2013.07.018. Epub 2013 Jul 30.

PMID: 23911631
8

First Report of Tomato yellow leaf curl Thailand virus Associated with Pepper Leaf Curl Disease in Taiwan.

Shih SL, et al.  Plant Dis. 2010 May;94(5):637. doi: 10.1094/PDIS-94-5-0637B.

PMID: 30754457
9

Pepper leaf curl Lahore virus requires the DNA B component of Tomato leaf curl New Delhi virus to cause leaf curl symptoms.

Shafiq M, et al.  Virol J. 2010 Dec 13;7:367. doi: 10.1186/1743-422X-7-367.

PMID: 21144019
10

Molecular Characterization of Tomato leaf curl Palampur virus and Pepper leaf curl betasatellite Naturally Infecting Pumpkin (Cucurbita moschata) in India.

Namrata J, et al.  Indian J Virol. 2010 Oct;21(2):128-32. doi: 10.1007/s13337-011-0022-7. Epub 2011 Mar 16.

PMID: 23637491