Pepper leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000838585.1 |
| Release date |
2015/2/12 |
| Submitter |
Chiemsombat,P., Warin,N., Attathom,S., Chatchawankarnpanich,O. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTCAAGTGGTCCCCCCGCGTGCGCTGGACCAATCATAACCATCCCTCAAAGCTTGCATGCCTGCAGGTTATCCCATCAAAACGTGGTCCCCAAGTACTTACATCAAAACATGTGGGATCCTTTACTAAACGAAGTTTCCTGAAAACCGTAACATGGTTTTAAGGTGTATGTTAGCAATTAAGTATTTGCAACTAGTAGAGAATACATACTCTCCTGATACATTAGGCTACGACCTAATACGTGATCTCATCTTGGTTATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTGCGTCGCCGTTTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCTACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGCCAACCGGACCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAACGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCAGATGTCACTCGAGGTAATGGGCTGACACACCGTGTTGGTAAAGGTCCTGTAATCAAGTCTGTTTACGTATGGGGAAGAATTTGGATGGATGAGATATCAAGCCAAGAATCACACCAATCTGTCATGTTTTTTTTAGTTCGGGATAGGAGACCATTTGGTACTCCACAGGACTTCGGTCAGGTGTTCAACATGTATGATAATGAGCCCAGTACTGCGACGGTGAAAAACGATAACAGAGATCGATTTCAAGTCCTTCGTCGTTTCCAGGCAACTGTGACAGGTGGGCAATATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTGAACAATCATGTGACTTACAACCATCAAGAAGCTGCGAAGTATGACAATCACACAGAGAATGCGCTTTTATTGTATATGGCATGTACGCATGCCAGTAATCCAGTGTATGCAACTTTGAAGATCAGAATCTACTTCTACGACTCTGTACAAAATTAATAAATATTGAATTTTATCATTTCTGAAAGACGAGCATCAATGGTGCCCTCCAATACATTGTACAATACATGTCTAATCGCCCTAATTACATTGTTTATACTAATCACTCCTAAATGGTCTAAATACTTGATACATTGATATTTAAATACTCTTAAGAAACGCGAGGTCTGAGGATGTAAACGAGTCCAAATTTGGCAGATTAGAAAGCATTGGTGTAGTCCCCCCGCTTTCCTCAGGTTGTAGTTGAACTGGATTTGCACCGTGATTATGTCGTGGTTCCTCAGGAACGGCCTCTCGTGGTGTTGTGTTATTCTGAAATATAGGGGATTGTTGACCGTCCAGATATATACGCCATTCTCTGCTTGAGCTGCTTGAGCTGCAGTGTGATGTGCCCCTGTGCGTGAATCCATGAGGATGGCAACCTAGAGCGACGAAATATGAACACCCACAAGGGAGATCAACTCGTCTTCGTCTAGTTGTCTTCTTGGCGATTCTGTGTCGCACCTTGATGGGAACCTGAGAAGAGTGGGCCTTCGATGGTGACGAAGATTGCATTCTTTAGAGCCCAATTTTTAAGTGCGGTGTTCTTTTCCTCTTCCAAGAACTCTTTATAGCTTGAATGTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAAGTAATGCGGATCGACGTCATCAATGACGTTATACCAAGGGTCGTTGTTGTACACTTTTGGGCTTAAGTCTAAATGACCACATAAATAGTTATGTGGTCCTAACGACCTGGCCCACATTGTTTTCCCCGTCCTGCTATCACCCTCTACCACTATACTTATCGGTCTTAATGGCCGCGCAGGCTTGACAACGTTTGCAGCAACCCATTCATTTAAGTTCCTCTGGACTTGGTCAAATGAGACCAAAAAGGGGGAAATGTACATTTCTATTCGGAGGCTAAAAATCTTATCTAAATTACTATTTAAATTATGGAATTGTAAAATATAATCTTTTGGGGCCTCTTCTTTCAAAATTGCGAGTGCCGAAGCTTTGGTTCCTGAATTGAGTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCCCCTCGAGCCGATCTTCCATCGATCTGGAAAACCCCATGATCAAGAACGTCTCCGTTTTTTGCGATATATTCTTTGACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCGTGGATTTTTGCATTGGAATTTACCTTCGAATTGGATGAGGATATGCAAGTGAGGAGTCCCATCTTCGTGCAATTCCCTGCAAATCCTGATAAATAGTTTAATTGTAGGGGTTTCTATGGCTTGGATTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCAATGTGGGTATGTGAGGAAATAGTTTTTCGCATTTATTCTTAAATTTTTAGGAGGAGCCATTGACCGGTCAATCGGTGTCTCTCAACTCTCTCCTATGTAATTGGTGTCTGGGGTCTTATTTATATGGAGACCCAATGGCATTATTGTAATTATGGAAAAGTACTTTAATTCAAATACCCAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_050013.1
|
|
Location
|
174-485 |
|
Gene Name
|
av2 |
|
Protein Name
|
AV2 precoat protein |
|
Coding Region
|
ATGGTTTTAAGGTGTATGTTAGCAATTAAGTATTTGCAACTAGTAGAGAATACATACTCTCCTGATACATTAGGCTACGACCTAATACGTGATCTCATCTTGGTTATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTGCGTCGCCGTTTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCTACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGCCAACCGGACCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGA |
|
Protein Sequence
|
MVLRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRLQGASPFELRQPICQPCCCPYCPRHKQKEVMGQPDHVQKAQDIQDVQKP |
|
NCBI Accession
|
NP_050014.1
|
|
Location
|
295-1065 |
|
Gene Name
|
av1 |
|
Protein Name
|
AV1 coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTGCGTCGCCGTTTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCTACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGCCAACCGGACCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAACGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCAGATGTCACTCGAGGTAATGGGCTGACACACCGTGTTGGTAAAGGTCCTGTAATCAAGTCTGTTTACGTATGGGGAAGAATTTGGATGGATGAGATATCAAGCCAAGAATCACACCAATCTGTCATGTTTTTTTTAGTTCGGGATAGGAGACCATTTGGTACTCCACAGGACTTCGGTCAGGTGTTCAACATGTATGATAATGAGCCCAGTACTGCGACGGTGAAAAACGATAACAGAGATCGATTTCAAGTCCTTCGTCGTTTCCAGGCAACTGTGACAGGTGGGCAATATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTGAACAATCATGTGACTTACAACCATCAAGAAGCTGCGAAGTATGACAATCACACAGAGAATGCGCTTTTATTGTATATGGCATGTACGCATGCCAGTAATCCAGTGTATGCAACTTTGAAGATCAGAATCTACTTCTACGACTCTGTACAAAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSWANRTMYRKPRIYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKGPVIKSVYVWGRIWMDEISSQESHQSVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
NP_050015.1
|
|
Location
|
1062-1475 |
|
Gene Name
|
ac3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGCACATCACACTGCAGCTCAAGCAGCTCAAGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTATATTTCAGAATAACACAACACCACGAGAGGCCGTTCCTGAGGAACCACGACATAATCACGGTGCAAATCCAGTTCAACTACAACCTGAGGAAAGCGGGGGGACTACACCAATGCTTTCTAATCTGCCAAATTTGGACTCGTTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAAATATCAATGTATCAAGTATTTAGACCATTTAGGAGTGATTAGTATAAACAATGTAATTAGGGCGATTAGACATGTATTGTACAATGTATTGGAGGGCACCATTGATGCTCGTCTTTCAGAAATGATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGAHHTAAQAAQAENGVYIWTVNNPLYFRITQHHERPFLRNHDIITVQIQFNYNLRKAGGLHQCFLICQIWTRLHPQTSRFLRVFKYQCIKYLDHLGVISINNVIRAIRHVLYNVLEGTIDARLSEMIKFNIY |
|
NCBI Accession
|
NP_050016.1
|
|
Location
|
1207-1620 |
|
Gene Name
|
ac2 |
|
Protein Name
|
AC2 trap protein |
|
Coding Region
|
ATGCAATCTTCGTCACCATCGAAGGCCCACTCTTCTCAGGTTCCCATCAAGGTGCGACACAGAATCGCCAAGAAGACAACTAGACGAAGACGAGTTGATCTCCCTTGTGGGTGTTCATATTTCGTCGCTCTAGGTTGCCATCCTCATGGATTCACGCACAGGGGCACATCACACTGCAGCTCAAGCAGCTCAAGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTATATTTCAGAATAACACAACACCACGAGAGGCCGTTCCTGAGGAACCACGACATAATCACGGTGCAAATCCAGTTCAACTACAACCTGAGGAAAGCGGGGGGACTACACCAATGCTTTCTAATCTGCCAAATTTGGACTCGTTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MQSSSPSKAHSSQVPIKVRHRIAKKTTRRRRVDLPCGCSYFVALGCHPHGFTHRGTSHCSSSSSSREWRIYLDGQQSPIFQNNTTPREAVPEEPRHNHGANPVQLQPEESGGTTPMLSNLPNLDSFTSSDLAFLKSI |
|
NCBI Accession
|
NP_050017.1
|
|
Location
|
1538-2602 |
|
Gene Name
|
ac1 |
|
Protein Name
|
AC1 replicase-associated protein |
|
Coding Region
|
ATGGCTCCTCCTAAAAATTTAAGAATAAATGCGAAAAACTATTTCCTCACATACCCACATTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAAATCCAAGCCATAGAAACCCCTACAATTAAACTATTTATCAGGATTTGCAGGGAATTGCACGAAGATGGGACTCCTCACTTGCATATCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAATCCACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGAATATATCGCAAAAAACGGAGACGTTCTTGATCATGGGGTTTTCCAGATCGATGGAAGATCGGCTCGAGGGGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCACTCAATTCAGGAACCAAAGCTTCGGCACTCGCAATTTTGAAAGAAGAGGCCCCAAAAGATTATATTTTACAATTCCATAATTTAAATAGTAATTTAGATAAGATTTTTAGCCTCCGAATAGAAATGTACATTTCCCCCTTTTTGGTCTCATTTGACCAAGTCCAGAGGAACTTAAATGAATGGGTTGCTGCAAACGTTGTCAAGCCTGCGCGGCCATTAAGACCGATAAGTATAGTGGTAGAGGGTGATAGCAGGACGGGGAAAACAATGTGGGCCAGGTCGTTAGGACCACATAACTATTTATGTGGTCATTTAGACTTAAGCCCAAAAGTGTACAACAACGACCCTTGGTATAACGTCATTGATGACGTCGATCCGCATTACTTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACAAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCACATTCAAGCTATAAAGAGTTCTTGGAAGAGGAAAAGAACACCGCACTTAAAAATTGGGCTCTAAAGAATGCAATCTTCGTCACCATCGAAGGCCCACTCTTCTCAGGTTCCCATCAAGGTGCGACACAGAATCGCCAAGAAGACAACTAG |
|
Protein Sequence
|
MAPPKNLRINAKNYFLTYPHCSLTKEEALSQIQAIETPTIKLFIRICRELHEDGTPHLHILIQFEGKFQCKNPRFFDLTSPTRSAHFHPNIQGAKSSTDVKEYIAKNGDVLDHGVFQIDGRSARGGCQSANDAYAEALNSGTKASALAILKEEAPKDYILQFHNLNSNLDKIFSLRIEMYISPFLVSFDQVQRNLNEWVAANVVKPARPLRPISIVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDPWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPHSSYKEFLEEEKNTALKNWALKNAIFVTIEGPLFSGSHQGATQNRQEDN |
|
NCBI Accession
|
NP_050018.1
|
|
Location
|
2152-2445 |
|
Gene Name
|
ac4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGACTCCTCACTTGCATATCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAATCCACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGAATATATCGCAAAAAACGGAGACGTTCTTGATCATGGGGTTTTCCAGATCGATGGAAGATCGGCTCGAGGGGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCACTCAATTCAGGAACCAAAGCTTCGGCACTCGCAATTTTGA |
|
Protein Sequence
|
MGLLTCISSSNSKVNSNAKIHDSSTSHPQPGQHISIRTFRELKAQQMSKNISQKTETFLIMGFSRSMEDRLEGVANLPTTHMPRHSIQEPKLRHSQF |