Pepper leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000838585.1
Release date 2015/2/12
Submitter Chiemsombat,P., Warin,N., Attathom,S., Chatchawankarnpanich,O.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_000882
ACCGGATGGCCGCGATTTTTTTTCAAGTGGTCCCCCCGCGTGCGCTGGACCAATCATAACCATCCCTCAAAGCTTGCATGCCTGCAGGTTATCCCATCAAAACGTGGTCCCCAAGTACTTACATCAAAACATGTGGGATCCTTTACTAAACGAAGTTTCCTGAAAACCGTAACATGGTTTTAAGGTGTATGTTAGCAATTAAGTATTTGCAACTAGTAGAGAATACATACTCTCCTGATACATTAGGCTACGACCTAATACGTGATCTCATCTTGGTTATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTGCGTCGCCGTTTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCTACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGCCAACCGGACCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAACGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCAGATGTCACTCGAGGTAATGGGCTGACACACCGTGTTGGTAAAGGTCCTGTAATCAAGTCTGTTTACGTATGGGGAAGAATTTGGATGGATGAGATATCAAGCCAAGAATCACACCAATCTGTCATGTTTTTTTTAGTTCGGGATAGGAGACCATTTGGTACTCCACAGGACTTCGGTCAGGTGTTCAACATGTATGATAATGAGCCCAGTACTGCGACGGTGAAAAACGATAACAGAGATCGATTTCAAGTCCTTCGTCGTTTCCAGGCAACTGTGACAGGTGGGCAATATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTGAACAATCATGTGACTTACAACCATCAAGAAGCTGCGAAGTATGACAATCACACAGAGAATGCGCTTTTATTGTATATGGCATGTACGCATGCCAGTAATCCAGTGTATGCAACTTTGAAGATCAGAATCTACTTCTACGACTCTGTACAAAATTAATAAATATTGAATTTTATCATTTCTGAAAGACGAGCATCAATGGTGCCCTCCAATACATTGTACAATACATGTCTAATCGCCCTAATTACATTGTTTATACTAATCACTCCTAAATGGTCTAAATACTTGATACATTGATATTTAAATACTCTTAAGAAACGCGAGGTCTGAGGATGTAAACGAGTCCAAATTTGGCAGATTAGAAAGCATTGGTGTAGTCCCCCCGCTTTCCTCAGGTTGTAGTTGAACTGGATTTGCACCGTGATTATGTCGTGGTTCCTCAGGAACGGCCTCTCGTGGTGTTGTGTTATTCTGAAATATAGGGGATTGTTGACCGTCCAGATATATACGCCATTCTCTGCTTGAGCTGCTTGAGCTGCAGTGTGATGTGCCCCTGTGCGTGAATCCATGAGGATGGCAACCTAGAGCGACGAAATATGAACACCCACAAGGGAGATCAACTCGTCTTCGTCTAGTTGTCTTCTTGGCGATTCTGTGTCGCACCTTGATGGGAACCTGAGAAGAGTGGGCCTTCGATGGTGACGAAGATTGCATTCTTTAGAGCCCAATTTTTAAGTGCGGTGTTCTTTTCCTCTTCCAAGAACTCTTTATAGCTTGAATGTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAAGTAATGCGGATCGACGTCATCAATGACGTTATACCAAGGGTCGTTGTTGTACACTTTTGGGCTTAAGTCTAAATGACCACATAAATAGTTATGTGGTCCTAACGACCTGGCCCACATTGTTTTCCCCGTCCTGCTATCACCCTCTACCACTATACTTATCGGTCTTAATGGCCGCGCAGGCTTGACAACGTTTGCAGCAACCCATTCATTTAAGTTCCTCTGGACTTGGTCAAATGAGACCAAAAAGGGGGAAATGTACATTTCTATTCGGAGGCTAAAAATCTTATCTAAATTACTATTTAAATTATGGAATTGTAAAATATAATCTTTTGGGGCCTCTTCTTTCAAAATTGCGAGTGCCGAAGCTTTGGTTCCTGAATTGAGTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCCCCTCGAGCCGATCTTCCATCGATCTGGAAAACCCCATGATCAAGAACGTCTCCGTTTTTTGCGATATATTCTTTGACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCGTGGATTTTTGCATTGGAATTTACCTTCGAATTGGATGAGGATATGCAAGTGAGGAGTCCCATCTTCGTGCAATTCCCTGCAAATCCTGATAAATAGTTTAATTGTAGGGGTTTCTATGGCTTGGATTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCAATGTGGGTATGTGAGGAAATAGTTTTTCGCATTTATTCTTAAATTTTTAGGAGGAGCCATTGACCGGTCAATCGGTGTCTCTCAACTCTCTCCTATGTAATTGGTGTCTGGGGTCTTATTTATATGGAGACCCAATGGCATTATTGTAATTATGGAAAAGTACTTTAATTCAAATACCCAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_050013.1
Location 174-485
Gene Name av2
Protein Name AV2 precoat protein
Coding Region ATGGTTTTAAGGTGTATGTTAGCAATTAAGTATTTGCAACTAGTAGAGAATACATACTCTCCTGATACATTAGGCTACGACCTAATACGTGATCTCATCTTGGTTATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTGCGTCGCCGTTTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCTACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGCCAACCGGACCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGA
Protein Sequence MVLRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRLQGASPFELRQPICQPCCCPYCPRHKQKEVMGQPDHVQKAQDIQDVQKP

NCBI Accession NP_050014.1
Location 295-1065
Gene Name av1
Protein Name AV1 coat protein
Coding Region ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTGCGTCGCCGTTTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCTACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGCCAACCGGACCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAACGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCAGATGTCACTCGAGGTAATGGGCTGACACACCGTGTTGGTAAAGGTCCTGTAATCAAGTCTGTTTACGTATGGGGAAGAATTTGGATGGATGAGATATCAAGCCAAGAATCACACCAATCTGTCATGTTTTTTTTAGTTCGGGATAGGAGACCATTTGGTACTCCACAGGACTTCGGTCAGGTGTTCAACATGTATGATAATGAGCCCAGTACTGCGACGGTGAAAAACGATAACAGAGATCGATTTCAAGTCCTTCGTCGTTTCCAGGCAACTGTGACAGGTGGGCAATATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTGAACAATCATGTGACTTACAACCATCAAGAAGCTGCGAAGTATGACAATCACACAGAGAATGCGCTTTTATTGTATATGGCATGTACGCATGCCAGTAATCCAGTGTATGCAACTTTGAAGATCAGAATCTACTTCTACGACTCTGTACAAAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSWANRTMYRKPRIYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKGPVIKSVYVWGRIWMDEISSQESHQSVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession NP_050015.1
Location 1062-1475
Gene Name ac3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGCACATCACACTGCAGCTCAAGCAGCTCAAGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTATATTTCAGAATAACACAACACCACGAGAGGCCGTTCCTGAGGAACCACGACATAATCACGGTGCAAATCCAGTTCAACTACAACCTGAGGAAAGCGGGGGGACTACACCAATGCTTTCTAATCTGCCAAATTTGGACTCGTTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAAATATCAATGTATCAAGTATTTAGACCATTTAGGAGTGATTAGTATAAACAATGTAATTAGGGCGATTAGACATGTATTGTACAATGTATTGGAGGGCACCATTGATGCTCGTCTTTCAGAAATGATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGAHHTAAQAAQAENGVYIWTVNNPLYFRITQHHERPFLRNHDIITVQIQFNYNLRKAGGLHQCFLICQIWTRLHPQTSRFLRVFKYQCIKYLDHLGVISINNVIRAIRHVLYNVLEGTIDARLSEMIKFNIY

NCBI Accession NP_050016.1
Location 1207-1620
Gene Name ac2
Protein Name AC2 trap protein
Coding Region ATGCAATCTTCGTCACCATCGAAGGCCCACTCTTCTCAGGTTCCCATCAAGGTGCGACACAGAATCGCCAAGAAGACAACTAGACGAAGACGAGTTGATCTCCCTTGTGGGTGTTCATATTTCGTCGCTCTAGGTTGCCATCCTCATGGATTCACGCACAGGGGCACATCACACTGCAGCTCAAGCAGCTCAAGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTATATTTCAGAATAACACAACACCACGAGAGGCCGTTCCTGAGGAACCACGACATAATCACGGTGCAAATCCAGTTCAACTACAACCTGAGGAAAGCGGGGGGACTACACCAATGCTTTCTAATCTGCCAAATTTGGACTCGTTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAA
Protein Sequence MQSSSPSKAHSSQVPIKVRHRIAKKTTRRRRVDLPCGCSYFVALGCHPHGFTHRGTSHCSSSSSSREWRIYLDGQQSPIFQNNTTPREAVPEEPRHNHGANPVQLQPEESGGTTPMLSNLPNLDSFTSSDLAFLKSI

NCBI Accession NP_050017.1
Location 1538-2602
Gene Name ac1
Protein Name AC1 replicase-associated protein
Coding Region ATGGCTCCTCCTAAAAATTTAAGAATAAATGCGAAAAACTATTTCCTCACATACCCACATTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAAATCCAAGCCATAGAAACCCCTACAATTAAACTATTTATCAGGATTTGCAGGGAATTGCACGAAGATGGGACTCCTCACTTGCATATCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAATCCACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGAATATATCGCAAAAAACGGAGACGTTCTTGATCATGGGGTTTTCCAGATCGATGGAAGATCGGCTCGAGGGGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCACTCAATTCAGGAACCAAAGCTTCGGCACTCGCAATTTTGAAAGAAGAGGCCCCAAAAGATTATATTTTACAATTCCATAATTTAAATAGTAATTTAGATAAGATTTTTAGCCTCCGAATAGAAATGTACATTTCCCCCTTTTTGGTCTCATTTGACCAAGTCCAGAGGAACTTAAATGAATGGGTTGCTGCAAACGTTGTCAAGCCTGCGCGGCCATTAAGACCGATAAGTATAGTGGTAGAGGGTGATAGCAGGACGGGGAAAACAATGTGGGCCAGGTCGTTAGGACCACATAACTATTTATGTGGTCATTTAGACTTAAGCCCAAAAGTGTACAACAACGACCCTTGGTATAACGTCATTGATGACGTCGATCCGCATTACTTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACAAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCACATTCAAGCTATAAAGAGTTCTTGGAAGAGGAAAAGAACACCGCACTTAAAAATTGGGCTCTAAAGAATGCAATCTTCGTCACCATCGAAGGCCCACTCTTCTCAGGTTCCCATCAAGGTGCGACACAGAATCGCCAAGAAGACAACTAG
Protein Sequence MAPPKNLRINAKNYFLTYPHCSLTKEEALSQIQAIETPTIKLFIRICRELHEDGTPHLHILIQFEGKFQCKNPRFFDLTSPTRSAHFHPNIQGAKSSTDVKEYIAKNGDVLDHGVFQIDGRSARGGCQSANDAYAEALNSGTKASALAILKEEAPKDYILQFHNLNSNLDKIFSLRIEMYISPFLVSFDQVQRNLNEWVAANVVKPARPLRPISIVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDPWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPHSSYKEFLEEEKNTALKNWALKNAIFVTIEGPLFSGSHQGATQNRQEDN

NCBI Accession NP_050018.1
Location 2152-2445
Gene Name ac4
Protein Name AC4 protein
Coding Region ATGGGACTCCTCACTTGCATATCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAATCCACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGAATATATCGCAAAAAACGGAGACGTTCTTGATCATGGGGTTTTCCAGATCGATGGAAGATCGGCTCGAGGGGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCACTCAATTCAGGAACCAAAGCTTCGGCACTCGCAATTTTGA
Protein Sequence MGLLTCISSSNSKVNSNAKIHDSSTSHPQPGQHISIRTFRELKAQQMSKNISQKTETFLIMGFSRSMEDRLEGVANLPTTHMPRHSIQEPKLRHSQF

References More References in PubMed

1

Pepper yellow leaf curl Aceh virus: a novel bipartite begomovirus isolated from chili pepper, tomato, and tobacco plants in Indonesia.

Kesumawati E, et al.  Arch Virol. 2019 Sep;164(9):2379-2383. doi: 10.1007/s00705-019-04316-8. Epub 2019 Jun 15.

PMID: 31203434
2

The threat of seed-transmissible pepper yellow leaf curl Indonesia virus in chili pepper.

Fadhila C, et al.  Microb Pathog. 2020 Jun;143:104132. doi: 10.1016/j.micpath.2020.104132. Epub 2020 Mar 10.

PMID: 32169496
3

Genotyping-by-sequencing-based QTL mapping reveals novel loci for Pepper yellow leaf curl virus (PepYLCV) resistance in Capsicum annuum.

Siddique MI, et al.  PLoS One. 2022 Feb 17;17(2):e0264026. doi: 10.1371/journal.pone.0264026. eCollection 2022.

PMID: 35176091
4

Tomato yellow leaf curl virus: Characteristics, influence, and regulation mechanism.

Cao X, et al.  Plant Physiol Biochem. 2024 Aug;213:108812. doi: 10.1016/j.plaphy.2024.108812. Epub 2024 Jun 8.

PMID: 38875781
5

Molecular mapping of dominant gene responsible for leaf curl virus resistance in chilli pepper (Capsicum annuum L.).

Thakur H, et al.  3 Biotech. 2020 Apr;10(4):182. doi: 10.1007/s13205-020-02168-7. Epub 2020 Mar 28.

PMID: 32257738
6

Identification of the determinant of tomato yellow leaf curl Kanchanaburi virus infectivity in tomato.

An JW, et al.  Virus Res. 2021 Jan 2;291:198192. doi: 10.1016/j.virusres.2020.198192. Epub 2020 Oct 13.

PMID: 33058965
7

Correction to: Molecular mapping of dominant gene responsible for leaf curl virus resistance in chilli pepper (Capsicum annuum L.).

Thakur H, et al.  3 Biotech. 2020 Oct;10(10):417. doi: 10.1007/s13205-020-02402-2. Epub 2020 Sep 4.

PMID: 32953379
8

Transreplication Preference of the Tomato Leaf Curl Joydebpur Virus for a Noncognate Betasatellite through Iteron Resemblance on Nicotiana bethamiana.

Vo TTB, et al.  Microorganisms. 2023 Dec 1;11(12):2907. doi: 10.3390/microorganisms11122907.

PMID: 38138051
9

Identification of Chili leaf curl virus Causing Leaf Curl Disease of Petunia in Oman.

Al-Shihi AA, et al.  Plant Dis. 2014 Apr;98(4):572. doi: 10.1094/PDIS-06-13-0678-PDN.

PMID: 30708693
10

Strains of a new bipartite begomovirus, pepper yellow leaf curl Indonesia virus, in leaf-curl-diseased tomato and yellow-vein-diseased ageratum in Indonesia.

Sakata JJ, et al.  Arch Virol. 2008;153(12):2307-13. doi: 10.1007/s00705-008-0254-z. Epub 2008 Nov 18.

PMID: 19015934