Genus | Begomovirus |
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NCBI Assembly | GCF_000894415.1 |
Isolate | Pakistan:Punjab, Lahore |
Release date | 2015/2/22 |
Submitter | Tahir,M., Haider,M.S., Briddon,R.W. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_005352656.1 |
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Location | 145-501 |
Gene Name | AV1 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGATCCATTAGTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGCTAGTAGAAAATACATATTCCCCAGACACTCTGGGCTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACCTCGACAGCCCATATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCTAG |
Protein Sequence | MWDPLVNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEASSRYNHFHARFEGTPPSQPRQPICQPCCCPHCPRHKGKSMGQQAHESEAQDVQDVQEPRCS |
NCBI Accession | YP_005352657.1 |
---|---|
Location | 305-1075 |
Gene Name | CP |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACCTCGACAGCCCATATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCTAGGGGGTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGGCACGATGTAGTTCATATAGGGAAGGTTATGTGTATTAGTGATGTTACCCGTGGTACTGGTTTAACCCATAGAGTAGGTAGGCGTTTCTGTGTTAAGTCTGTGTATGTATTAGGGAAGATATGGATGGATGAGAATATCAAGACCAAGAATCACACGAATAGTGTGATGTTCTTTCTTGTCCGTGATCGTCGTCCTGTTGATAAACCACAAGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCAACCGTGAAGAATATGCATAGAGATCGTTATCAGGTCTTGAGGAAATGGCACGCAACGGTTACTGGTGGCCAGTACGCTTCGAAGGAACAGGCATTAGTTAAGAAGTTCGTTAGGGTTAACAATTATGTTGTGTATAACCAGCAGGAGGCTGGAAAATATGAAAATCACACAGAGAATGCTCTGATGTTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCGACGTTGAAGATACGGATCTATTTCTATGATTCAGTATCGAATTAA |
Protein Sequence | MSKRPADIIISTPASKVRRRLNLDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGRRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession | YP_005352658.1 |
---|---|
Location | 1072-1476 |
Gene Name | REn |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTATATTTCAAGATAACCGAGCACCACAACAGGCCATTCCTGAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTGTTGCTGTTTTTAAATAATTTAGCTGTAATTAGTATAAACAATGTAATTAGAGCTGTCGACCATGTATTATGGCATGTATTAGCACAAACAATTCATGTACAAAGTTCAAATATAATAAAATTCAATCTTTATTAA |
Protein Sequence | MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNRDIITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLLFLNNLAVISINNVIRAVDHVLWHVLAQTIHVQSSNIIKFNLY |
NCBI Accession | YP_005352659.1 |
---|---|
Location | 1217-1621 |
Gene Name | TrAP |
Protein Name | transcriptional activator protein |
Coding Region | ATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGACCTAGATTGCGGCTGTTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTATATTTCAAGATAACCGAGCACCACAACAGGCCATTCCTGAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAG |
Protein Sequence | MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSGREWRVYLGDNKSPIFQDNRAPQQAIPEEPRHHHRADTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGI |
NCBI Accession | YP_005352660.1 |
---|---|
Location | 1524-2609 |
Gene Name | AC1 |
Protein Name | replication-associated protein |
Coding Region | ATGACTCGTACGCAGTCGTTTTGTGTTAATGCAAAAAATATCTTCCTTACTTACCCCAAATGCCCAATACCCAAAGAACAAATGCTCGACATTCTTCGGTCGATAAATTGCCCATCTGATAAACTATTTATCAGAGTGGCACAAGAGAAACACCAGGATGGGTCTCTGCATATCCACGCCCTCATCCAATTCAAAGGTAAATCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACGCCTCCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAAATGCGGGTTCGGCTGAAGCAGCTTTAGCAATAATAAGGGAGAAACTCCTCAAAGATTTTATTTTTCAATATCATAATTTAAAATCTAATTTAGATAGGATTTTTCAACCTCCAGCGGAGGTTTATGTTTCTCCTTGTTGTTCTTCTTCTTTTGATCAAGTTCCGACAGAACTTGAGGAGTGGGCTGCACAGAACGTTGTCAGTGCCGCTGCGCGGCCTTTAAGACCCATGAGTATAGTGTTGGAGGGTGAGAGTAGAACGGGGAAGACAATGTGGGCCAGGTCCCTGGGACCACACAACTATTTGTGTGGACATCTCGACCTTAGCCCAAAGGTCTACAATAACGACGCCTGGTATAACGTCATTAATGACGTTGATCCGCATTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCTAGCTATAAAGAGTTCTTGGATGAAGAGAAAAATAGCGCACTAAGAAATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGA |
Protein Sequence | MTRTQSFCVNAKNIFLTYPKCPIPKEQMLDILRSINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNASQFHPNFQGAKSSSDVKSYIEKDSDYIDWGQFQIDGRYGRGGQQTANDAAAEALNAGSAEAALAIIREKLLKDFIFQYHNLKSNLDRIFQPPAEVYVSPCCSSSFDQVPTELEEWAAQNVVSAAARPLRPMSIVLEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVINDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALRNWALKNATFITLEGPLYSGSNQSATQASQEGDQASSR |
NCBI Accession | YP_005352661.1 |
---|---|
Location | 2195-2452 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGGGTCTCTGCATATCCACGCCCTCATCCAATTCAAAGGTAAATCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACGCCTCCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAA |
Protein Sequence | MGLCISTPSSNSKVNPSSETPDISMSLTLITPPNSTQTSRELSPALMSSPTSRRTVITSTGVSFRSMEDMVEEVNRQLMMLQQRP |
1 |
Shafiq M, et al. Virol J. 2010 Dec 13;7:367. doi: 10.1186/1743-422X-7-367. PMID: 21144019 |
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2 |
Tahir M, et al. Virus Res. 2010 Apr;149(1):109-14. doi: 10.1016/j.virusres.2009.12.007. Epub 2010 Jan 15. PMID: 20079779 |
3 |
Khan AJ, et al. Virus Res. 2013 Oct;177(1):87-97. doi: 10.1016/j.virusres.2013.07.018. Epub 2013 Jul 30. PMID: 23911631 |
4 |
Khan AJ, et al. Arch Virol. 2014 Mar;159(3):445-55. doi: 10.1007/s00705-013-1853-x. Epub 2013 Sep 20. PMID: 24052149 |