Pepper leaf curl Lahore virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000894415.1
Isolate Pakistan:Punjab, Lahore
Release date 2015/2/22
Submitter Tahir,M., Haider,M.S., Briddon,R.W.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_016984
ACCGGATGGCCGCGATTTTTTTAAGTGGGCCCCACAACGCACGTGCTGACAAAGACATGTGGACCAATTAAAACCGCCCCTCATATCTTAATTGTTTCATGGTCCCCCCTATAAACTAGGGCTCCAAGTAGTGCACTCTTACCAATGTGGGATCCATTAGTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGCTAGTAGAAAATACATATTCCCCAGACACTCTGGGCTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACCTCGACAGCCCATATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCTAGGGGGTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGGCACGATGTAGTTCATATAGGGAAGGTTATGTGTATTAGTGATGTTACCCGTGGTACTGGTTTAACCCATAGAGTAGGTAGGCGTTTCTGTGTTAAGTCTGTGTATGTATTAGGGAAGATATGGATGGATGAGAATATCAAGACCAAGAATCACACGAATAGTGTGATGTTCTTTCTTGTCCGTGATCGTCGTCCTGTTGATAAACCACAAGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCAACCGTGAAGAATATGCATAGAGATCGTTATCAGGTCTTGAGGAAATGGCACGCAACGGTTACTGGTGGCCAGTACGCTTCGAAGGAACAGGCATTAGTTAAGAAGTTCGTTAGGGTTAACAATTATGTTGTGTATAACCAGCAGGAGGCTGGAAAATATGAAAATCACACAGAGAATGCTCTGATGTTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCGACGTTGAAGATACGGATCTATTTCTATGATTCAGTATCGAATTAATAAAGATTGAATTTTATTATATTTGAACTTTGTACATGAATTGTTTGTGCTAATACATGCCATAATACATGGTCGACAGCTCTAATTACATTGTTTATACTAATTACAGCTAAATTATTTAAAAACAGCAACACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGCACGGTGATGATGTCTCGGTTCCTCAGGAATGGCCTGTTGTGGTGCTCGGTTATCTTGAAATATAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTCTGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAATATGAACAGCCGCAATCTAGGTCAACGCGACGACGCCTGGTCCCCTTCTTGGCTAGCCTGTGTTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATTTCTTAGTGCGCTATTTTTCTCTTCATCCAAGAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAATGCGGATCAACGTCATTAATGACGTTATACCAGGCGTCGTTATTGTAGACCTTTGGGCTAAGGTCGAGATGTCCACACAAATAGTTGTGTGGTCCCAGGGACCTGGCCCACATTGTCTTCCCCGTTCTACTCTCACCCTCCAACACTATACTCATGGGTCTTAAAGGCCGCGCAGCGGCACTGACAACGTTCTGTGCAGCCCACTCCTCAAGTTCTGTCGGAACTTGATCAAAAGAAGAAGAACAACAAGGAGAAACATAAACCTCCGCTGGAGGTTGAAAAATCCTATCTAAATTAGATTTTAAATTATGATATTGAAAAATAAAATCTTTGAGGAGTTTCTCCCTTATTATTGCTAAAGCTGCTTCAGCCGAACCCGCATTTAAGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCGACCATATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGGGAGGCGTTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTTGGATTTACCTTTGAATTGGATGAGGGCGTGGATATGCAGAGACCCATCCTGGTGTTTCTCTTGTGCCACTCTGATAAATAGTTTATCAGATGGGCAATTTATCGACCGAAGAATGTCGAGCATTTGTTCTTTGGGTATTGGGCATTTGGGGTAAGTAAGGAAGATATTTTTTGCATTAACACAAAACGACTGCGTACGAGTCATATTGAATTGGGGACACTCAAAACTCTGAGGAATGGGGGACACTGGGGACGCTTTTATATGGTGTCCCCAAATTGCAAATTGGTAATTTGCACAACTTTAATTCAAATTCCCGAGAATCGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_005352656.1
Location 145-501
Gene Name AV1
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTAGTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGCTAGTAGAAAATACATATTCCCCAGACACTCTGGGCTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACCTCGACAGCCCATATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCTAG
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEASSRYNHFHARFEGTPPSQPRQPICQPCCCPHCPRHKGKSMGQQAHESEAQDVQDVQEPRCS

NCBI Accession YP_005352657.1
Location 305-1075
Gene Name CP
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACCTCGACAGCCCATATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCTAGGGGGTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGGCACGATGTAGTTCATATAGGGAAGGTTATGTGTATTAGTGATGTTACCCGTGGTACTGGTTTAACCCATAGAGTAGGTAGGCGTTTCTGTGTTAAGTCTGTGTATGTATTAGGGAAGATATGGATGGATGAGAATATCAAGACCAAGAATCACACGAATAGTGTGATGTTCTTTCTTGTCCGTGATCGTCGTCCTGTTGATAAACCACAAGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCAACCGTGAAGAATATGCATAGAGATCGTTATCAGGTCTTGAGGAAATGGCACGCAACGGTTACTGGTGGCCAGTACGCTTCGAAGGAACAGGCATTAGTTAAGAAGTTCGTTAGGGTTAACAATTATGTTGTGTATAACCAGCAGGAGGCTGGAAAATATGAAAATCACACAGAGAATGCTCTGATGTTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCGACGTTGAAGATACGGATCTATTTCTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNLDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGRRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_005352658.1
Location 1072-1476
Gene Name REn
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTATATTTCAAGATAACCGAGCACCACAACAGGCCATTCCTGAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTGTTGCTGTTTTTAAATAATTTAGCTGTAATTAGTATAAACAATGTAATTAGAGCTGTCGACCATGTATTATGGCATGTATTAGCACAAACAATTCATGTACAAAGTTCAAATATAATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNRDIITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLLFLNNLAVISINNVIRAVDHVLWHVLAQTIHVQSSNIIKFNLY

NCBI Accession YP_005352659.1
Location 1217-1621
Gene Name TrAP
Protein Name transcriptional activator protein
Coding Region ATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGACCTAGATTGCGGCTGTTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTATATTTCAAGATAACCGAGCACCACAACAGGCCATTCCTGAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAG
Protein Sequence MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSGREWRVYLGDNKSPIFQDNRAPQQAIPEEPRHHHRADTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGI

NCBI Accession YP_005352660.1
Location 1524-2609
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGACTCGTACGCAGTCGTTTTGTGTTAATGCAAAAAATATCTTCCTTACTTACCCCAAATGCCCAATACCCAAAGAACAAATGCTCGACATTCTTCGGTCGATAAATTGCCCATCTGATAAACTATTTATCAGAGTGGCACAAGAGAAACACCAGGATGGGTCTCTGCATATCCACGCCCTCATCCAATTCAAAGGTAAATCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACGCCTCCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAAATGCGGGTTCGGCTGAAGCAGCTTTAGCAATAATAAGGGAGAAACTCCTCAAAGATTTTATTTTTCAATATCATAATTTAAAATCTAATTTAGATAGGATTTTTCAACCTCCAGCGGAGGTTTATGTTTCTCCTTGTTGTTCTTCTTCTTTTGATCAAGTTCCGACAGAACTTGAGGAGTGGGCTGCACAGAACGTTGTCAGTGCCGCTGCGCGGCCTTTAAGACCCATGAGTATAGTGTTGGAGGGTGAGAGTAGAACGGGGAAGACAATGTGGGCCAGGTCCCTGGGACCACACAACTATTTGTGTGGACATCTCGACCTTAGCCCAAAGGTCTACAATAACGACGCCTGGTATAACGTCATTAATGACGTTGATCCGCATTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCTAGCTATAAAGAGTTCTTGGATGAAGAGAAAAATAGCGCACTAAGAAATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGA
Protein Sequence MTRTQSFCVNAKNIFLTYPKCPIPKEQMLDILRSINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNASQFHPNFQGAKSSSDVKSYIEKDSDYIDWGQFQIDGRYGRGGQQTANDAAAEALNAGSAEAALAIIREKLLKDFIFQYHNLKSNLDRIFQPPAEVYVSPCCSSSFDQVPTELEEWAAQNVVSAAARPLRPMSIVLEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVINDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALRNWALKNATFITLEGPLYSGSNQSATQASQEGDQASSR

NCBI Accession YP_005352661.1
Location 2195-2452
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCTGCATATCCACGCCCTCATCCAATTCAAAGGTAAATCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACGCCTCCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAA
Protein Sequence MGLCISTPSSNSKVNPSSETPDISMSLTLITPPNSTQTSRELSPALMSSPTSRRTVITSTGVSFRSMEDMVEEVNRQLMMLQQRP

References More References in PubMed

1

Pepper leaf curl Lahore virus requires the DNA B component of Tomato leaf curl New Delhi virus to cause leaf curl symptoms.

Shafiq M, et al.  Virol J. 2010 Dec 13;7:367. doi: 10.1186/1743-422X-7-367.

PMID: 21144019
2

Chili leaf curl betasatellite is associated with a distinct recombinant begomovirus, Pepper leaf curl Lahore virus, in Capsicum in Pakistan.

Tahir M, et al.  Virus Res. 2010 Apr;149(1):109-14. doi: 10.1016/j.virusres.2009.12.007. Epub 2010 Jan 15.

PMID: 20079779
3

Genetic diversity and distribution of a distinct strain of Chili leaf curl virus and associated betasatellite infecting tomato and pepper in Oman.

Khan AJ, et al.  Virus Res. 2013 Oct;177(1):87-97. doi: 10.1016/j.virusres.2013.07.018. Epub 2013 Jul 30.

PMID: 23911631
4

Recent evolution of a novel begomovirus causing tomato leaf curl disease in the Al-Batinah region of Oman.

Khan AJ, et al.  Arch Virol. 2014 Mar;159(3):445-55. doi: 10.1007/s00705-013-1853-x. Epub 2013 Sep 20.

PMID: 24052149