Pepper leaf curl Bangladesh virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000842805.1
Isolate Bangladesh: Bogra
Release date 2015/2/12
Submitter Tsai,W.S., Green,S.K., Rashid,M.H.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004192
ACCGGATGGCCGCGATTTTTTTTGTGTGGGCCCCACAACGCACGTGCTGACAAGGACAAATGGACCAATGAAATTGGCTCCTCGTAGCTTAATTATTCAATGGTCCCCTATATAAACTTGGTCCCCAAGTAGTGCACACATACCAATGTGGGATCCATTATTAAACGAGTTCCCCGAAACCGTTCACGGTTTTCGGTGTATGCTAGCCGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGATACTTTGGGGTACGACTTAATCCGGGATTTAATATCAGTCATCAGGGCCAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGCTGTGAAGGCCCGTGTAAGGTCCAGTCTTTTGAGTCTAGACATGATGTCCAACACATAGGCAAAGTCATGTGTGTTAGTGATGTTACTCGTGGAACTGGGCTGACCCATCGAGTTGGTAAAAGGTTTTGTGTTAAGTCCGTCTATGTTCTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCACACGAATAGTGTTATGTTCTTCCTTGTTAGAGATCGTAGGCCCGTAGATAAGCCCCAAGACTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCGACTGTGAAGAACGTGCATCGTGATAGGTATCAGGTGCTCAGGAAGTGGCATGCTACTGTGACAGGTGGTCAATATGCATCGAAGGAGCAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTACGTTGTGTATAACCAGCAGGAGGCTGGCAAGTATGAAAACCACACTGAGAATGCTTTGATGTTGTACATGGCGTGTACTCATGCTTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCCGTAACAAATTAATAAATATTGAATTTTATTATGTTTGAACTTTGTACATAAATTGTTTGCGCTACTACATTCCATAATACATGATCGACTGCTCTAATTACATTGTTTATACTAATTACAGCAAAATTATTTAAAAACTGCAAAACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGGACTGTTATGATGTCGTGGTTCATTAGGAATGGCCGGTTGTGGTGCTCGGTTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTTGGCCTGAGCTGCAGTGATGGGTGCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAATATGAACAGCCGCAGTCTAGGTCAACGCGACGACGCCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATTTTTGAGTGCGGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATGCGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGCACTGGCTTTCCGTATTTCGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGTTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCATTACTGTAGACCTTAGGGCTAAGGTCTAGATGACCACACAAATAATTGTGTGGACCCAACGACCTAGCCCACATGGTCTTCCCTGTTCGACTATCACCCTCTACCACAATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTCACCACGTTCTCGGAAGCCCATTCCTCAAGTTCTCCGGGAACTTGATCAAAAGAAGAAGAACAAAAAGGAGAAACATAAACCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTTGGGAGTTTTTCCCTTATTATTGCTAATGCCGCTTCAGCCGAACCCGCATTTAAGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAAGCGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGCTCCCTGGAAATTTGGGTGGAATTGGGTGGCGTTATTAGGGTGAGTGACATCGAAATGTCTTGGGTTTCTGAACTGGGATTTACCTTTGAATTGGATGAGCGCGTGGATATGCAAGCTCCCATCTTGGTGTTTTTCCTGTGAAACTCTGATAAATAATTTATCAGAAGGGCAATTTATAGATTTCAGAATTTCTAGCATTTGTTCTTTCGGTATTGGGCATTTTGGATAAGTGAGGAAGATATTTTTGGCTTTAACTTGGAATTGGTGTGTACGTGTCATTTTGAATTGGGAGCTCTTCAAAACTCTACGGAATGGGGTGCTTTGGGTGCCTATTTATAGTGAGCTCCCAAATGGCATTGACGTAATTACGGAGAAAATTCCAAAATTTTCCCGCTCCTAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_690912.1
Location 146-502
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTATTAAACGAGTTCCCCGAAACCGTTCACGGTTTTCGGTGTATGCTAGCCGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGATACTTTGGGGTACGACTTAATCCGGGATTTAATATCAGTCATCAGGGCCAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG
Protein Sequence MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQEAQDVQDVQKPRCS

NCBI Accession NP_690913.1
Location 306-1076
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGCTGTGAAGGCCCGTGTAAGGTCCAGTCTTTTGAGTCTAGACATGATGTCCAACACATAGGCAAAGTCATGTGTGTTAGTGATGTTACTCGTGGAACTGGGCTGACCCATCGAGTTGGTAAAAGGTTTTGTGTTAAGTCCGTCTATGTTCTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCACACGAATAGTGTTATGTTCTTCCTTGTTAGAGATCGTAGGCCCGTAGATAAGCCCCAAGACTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCGACTGTGAAGAACGTGCATCGTGATAGGTATCAGGTGCTCAGGAAGTGGCATGCTACTGTGACAGGTGGTCAATATGCATCGAAGGAGCAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTACGTTGTGTATAACCAGCAGGAGGCTGGCAAGTATGAAAACCACACTGAGAATGCTTTGATGTTGTACATGGCGTGTACTCATGCTTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCCGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession NP_690914.1
Location 1073-1477
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCACGCACAGGGGCACCCATCACTGCAGCTCAGGCCAAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACCGGCCATTCCTAATGAACCACGACATCATAACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTTTTGCAGTTTTTAAATAATTTTGCTGTAATTAGTATAAACAATGTAATTAGAGCAGTCGATCATGTATTATGGAATGTAGTAGCGCAAACAATTTATGTACAAAGTTCAAACATAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGAPITAAQAKNGVFIWEITNPLYFKITEHHNRPFLMNHDIITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINNVIRAVDHVLWNVVAQTIYVQSSNIIKFNIY

NCBI Accession NP_690915.1
Location 1218-1622
Gene Name C2
Protein Name C2 protein
Coding Region ATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGACCTAGACTGCGGCTGTTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGCACCCATCACTGCAGCTCAGGCCAAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACCGGCCATTCCTAATGAACCACGACATCATAACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAG
Protein Sequence MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSGQEWRVYLGDNKSPVFQDNRAPQPAIPNEPRHHNSPSTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGI

NCBI Accession NP_690916.1
Location 1525-2610
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGACACGTACACACCAATTCCAAGTTAAAGCCAAAAATATCTTCCTCACTTATCCAAAATGCCCAATACCGAAAGAACAAATGCTAGAAATTCTGAAATCTATAAATTGCCCTTCTGATAAATTATTTATCAGAGTTTCACAGGAAAAACACCAAGATGGGAGCTTGCATATCCACGCGCTCATCCAATTCAAAGGTAAATCCCAGTTCAGAAACCCAAGACATTTCGATGTCACTCACCCTAATAACGCCACCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCGCTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAAATGCGGGTTCGGCTGAAGCGGCATTAGCAATAATAAGGGAAAAACTCCCAAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCGTTGGAGGTTTATGTTTCTCCTTTTTGTTCTTCTTCTTTTGATCAAGTTCCCGGAGAACTTGAGGAATGGGCTTCCGAGAACGTGGTGAGTGCCGCTGCGCGGCCATTGAGACCCATGAGTATTGTGGTAGAGGGTGATAGTCGAACAGGGAAGACCATGTGGGCTAGGTCGTTGGGTCCACACAATTATTTGTGTGGTCATCTAGACCTTAGCCCTAAGGTCTACAGTAATGACGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAACACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACGAAATACGGAAAGCCAGTGCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCGCATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCCGCACTCAAAAATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGA
Protein Sequence MTRTHQFQVKAKNIFLTYPKCPIPKEQMLEILKSINCPSDKLFIRVSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNATQFHPNFQGAKSSSDVKSYIEKDGDYIDWGRFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPLEVYVSPFCSSSFDQVPGELEEWASENVVSAAARPLRPMSIVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPHSSYKEFLDEEKNSALKNWALKNATFITLEGPLYSGSNQSAAQASQEGDQASSR

NCBI Accession NP_690917.1
Location 2196-2453
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGAGCTTGCATATCCACGCGCTCATCCAATTCAAAGGTAAATCCCAGTTCAGAAACCCAAGACATTTCGATGTCACTCACCCTAATAACGCCACCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCGCTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAA
Protein Sequence MGACISTRSSNSKVNPSSETQDISMSLTLITPPNSTQISRELSPAPMSSPTSRRTVITSTGVAFRSMEDLLEEVNRQLMMLQQRP

References More References in PubMed

1

Molecular characterization of squash leaf curl Yunnan virus, a new begomovirus and evidence for recombination.

Xie Y, et al.  Arch Virol. 2003 Oct;148(10):2047-54. doi: 10.1007/s00705-003-0153-2.

PMID: 14551824
2

Characterization of a new begomovirus and betasatellite associated with chilli leaf curl disease in India.

Khan ZA, et al.  Arch Virol. 2017 Feb;162(2):561-565. doi: 10.1007/s00705-016-3096-0. Epub 2016 Oct 13.

PMID: 27738844
3

Diversity and distribution of begomoviruses infecting tomato in India.

Reddy RV, et al.  Arch Virol. 2005 May;150(5):845-67. doi: 10.1007/s00705-004-0486-5. Epub 2005 Feb 10.

PMID: 15703846
4

Nucleotide sequencing, whitefly transmission, and screening tomato for resistance against two newly described begomoviruses in bangladesh.

Maruthi MN, et al.  Phytopathology. 2005 Dec;95(12):1472-81. doi: 10.1094/PHYTO-95-1472.

PMID: 18943559