Genus | Begomovirus |
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NCBI Assembly | GCF_000842805.1 |
Isolate | Bangladesh: Bogra |
Release date | 2015/2/12 |
Submitter | Tsai,W.S., Green,S.K., Rashid,M.H. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_690912.1 |
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Location | 146-502 |
Gene Name | V2 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGATCCATTATTAAACGAGTTCCCCGAAACCGTTCACGGTTTTCGGTGTATGCTAGCCGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGATACTTTGGGGTACGACTTAATCCGGGATTTAATATCAGTCATCAGGGCCAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG |
Protein Sequence | MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQEAQDVQDVQKPRCS |
NCBI Accession | NP_690913.1 |
---|---|
Location | 306-1076 |
Gene Name | V1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGCTGTGAAGGCCCGTGTAAGGTCCAGTCTTTTGAGTCTAGACATGATGTCCAACACATAGGCAAAGTCATGTGTGTTAGTGATGTTACTCGTGGAACTGGGCTGACCCATCGAGTTGGTAAAAGGTTTTGTGTTAAGTCCGTCTATGTTCTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCACACGAATAGTGTTATGTTCTTCCTTGTTAGAGATCGTAGGCCCGTAGATAAGCCCCAAGACTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCGACTGTGAAGAACGTGCATCGTGATAGGTATCAGGTGCTCAGGAAGTGGCATGCTACTGTGACAGGTGGTCAATATGCATCGAAGGAGCAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTACGTTGTGTATAACCAGCAGGAGGCTGGCAAGTATGAAAACCACACTGAGAATGCTTTGATGTTGTACATGGCGTGTACTCATGCTTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCCGTAACAAATTAA |
Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession | NP_690914.1 |
---|---|
Location | 1073-1477 |
Gene Name | C3 |
Protein Name | C3 protein |
Coding Region | ATGGATTCACGCACAGGGGCACCCATCACTGCAGCTCAGGCCAAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACCGGCCATTCCTAATGAACCACGACATCATAACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTTTTGCAGTTTTTAAATAATTTTGCTGTAATTAGTATAAACAATGTAATTAGAGCAGTCGATCATGTATTATGGAATGTAGTAGCGCAAACAATTTATGTACAAAGTTCAAACATAATAAAATTCAATATTTATTAA |
Protein Sequence | MDSRTGAPITAAQAKNGVFIWEITNPLYFKITEHHNRPFLMNHDIITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINNVIRAVDHVLWNVVAQTIYVQSSNIIKFNIY |
NCBI Accession | NP_690915.1 |
---|---|
Location | 1218-1622 |
Gene Name | C2 |
Protein Name | C2 protein |
Coding Region | ATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGACCTAGACTGCGGCTGTTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGCACCCATCACTGCAGCTCAGGCCAAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACCGGCCATTCCTAATGAACCACGACATCATAACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAG |
Protein Sequence | MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSGQEWRVYLGDNKSPVFQDNRAPQPAIPNEPRHHNSPSTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGI |
NCBI Accession | NP_690916.1 |
---|---|
Location | 1525-2610 |
Gene Name | C1 |
Protein Name | replication-associated protein |
Coding Region | ATGACACGTACACACCAATTCCAAGTTAAAGCCAAAAATATCTTCCTCACTTATCCAAAATGCCCAATACCGAAAGAACAAATGCTAGAAATTCTGAAATCTATAAATTGCCCTTCTGATAAATTATTTATCAGAGTTTCACAGGAAAAACACCAAGATGGGAGCTTGCATATCCACGCGCTCATCCAATTCAAAGGTAAATCCCAGTTCAGAAACCCAAGACATTTCGATGTCACTCACCCTAATAACGCCACCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCGCTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAAATGCGGGTTCGGCTGAAGCGGCATTAGCAATAATAAGGGAAAAACTCCCAAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCGTTGGAGGTTTATGTTTCTCCTTTTTGTTCTTCTTCTTTTGATCAAGTTCCCGGAGAACTTGAGGAATGGGCTTCCGAGAACGTGGTGAGTGCCGCTGCGCGGCCATTGAGACCCATGAGTATTGTGGTAGAGGGTGATAGTCGAACAGGGAAGACCATGTGGGCTAGGTCGTTGGGTCCACACAATTATTTGTGTGGTCATCTAGACCTTAGCCCTAAGGTCTACAGTAATGACGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAACACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACGAAATACGGAAAGCCAGTGCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCGCATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCCGCACTCAAAAATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGA |
Protein Sequence | MTRTHQFQVKAKNIFLTYPKCPIPKEQMLEILKSINCPSDKLFIRVSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNATQFHPNFQGAKSSSDVKSYIEKDGDYIDWGRFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPLEVYVSPFCSSSFDQVPGELEEWASENVVSAAARPLRPMSIVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPHSSYKEFLDEEKNSALKNWALKNATFITLEGPLYSGSNQSAAQASQEGDQASSR |
NCBI Accession | NP_690917.1 |
---|---|
Location | 2196-2453 |
Gene Name | C4 |
Protein Name | C4 protein |
Coding Region | ATGGGAGCTTGCATATCCACGCGCTCATCCAATTCAAAGGTAAATCCCAGTTCAGAAACCCAAGACATTTCGATGTCACTCACCCTAATAACGCCACCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCGCTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAA |
Protein Sequence | MGACISTRSSNSKVNPSSETQDISMSLTLITPPNSTQISRELSPAPMSSPTSRRTVITSTGVAFRSMEDLLEEVNRQLMMLQQRP |
1 |
Xie Y, et al. Arch Virol. 2003 Oct;148(10):2047-54. doi: 10.1007/s00705-003-0153-2. PMID: 14551824 |
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2 |
Khan ZA, et al. Arch Virol. 2017 Feb;162(2):561-565. doi: 10.1007/s00705-016-3096-0. Epub 2016 Oct 13. PMID: 27738844 |
3 |
Diversity and distribution of begomoviruses infecting tomato in India. Reddy RV, et al. Arch Virol. 2005 May;150(5):845-67. doi: 10.1007/s00705-004-0486-5. Epub 2005 Feb 10. PMID: 15703846 |
4 |
Maruthi MN, et al. Phytopathology. 2005 Dec;95(12):1472-81. doi: 10.1094/PHYTO-95-1472. PMID: 18943559 |