Pepper leaf curl Bangladesh virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000842805.1 |
| Isolate |
Bangladesh: Bogra |
| Release date |
2015/2/12 |
| Submitter |
Tsai,W.S., Green,S.K., Rashid,M.H. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTGTGTGGGCCCCACAACGCACGTGCTGACAAGGACAAATGGACCAATGAAATTGGCTCCTCGTAGCTTAATTATTCAATGGTCCCCTATATAAACTTGGTCCCCAAGTAGTGCACACATACCAATGTGGGATCCATTATTAAACGAGTTCCCCGAAACCGTTCACGGTTTTCGGTGTATGCTAGCCGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGATACTTTGGGGTACGACTTAATCCGGGATTTAATATCAGTCATCAGGGCCAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGCTGTGAAGGCCCGTGTAAGGTCCAGTCTTTTGAGTCTAGACATGATGTCCAACACATAGGCAAAGTCATGTGTGTTAGTGATGTTACTCGTGGAACTGGGCTGACCCATCGAGTTGGTAAAAGGTTTTGTGTTAAGTCCGTCTATGTTCTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCACACGAATAGTGTTATGTTCTTCCTTGTTAGAGATCGTAGGCCCGTAGATAAGCCCCAAGACTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCGACTGTGAAGAACGTGCATCGTGATAGGTATCAGGTGCTCAGGAAGTGGCATGCTACTGTGACAGGTGGTCAATATGCATCGAAGGAGCAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTACGTTGTGTATAACCAGCAGGAGGCTGGCAAGTATGAAAACCACACTGAGAATGCTTTGATGTTGTACATGGCGTGTACTCATGCTTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCCGTAACAAATTAATAAATATTGAATTTTATTATGTTTGAACTTTGTACATAAATTGTTTGCGCTACTACATTCCATAATACATGATCGACTGCTCTAATTACATTGTTTATACTAATTACAGCAAAATTATTTAAAAACTGCAAAACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGGACTGTTATGATGTCGTGGTTCATTAGGAATGGCCGGTTGTGGTGCTCGGTTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTTGGCCTGAGCTGCAGTGATGGGTGCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAATATGAACAGCCGCAGTCTAGGTCAACGCGACGACGCCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATTTTTGAGTGCGGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATGCGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGCACTGGCTTTCCGTATTTCGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGTTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCATTACTGTAGACCTTAGGGCTAAGGTCTAGATGACCACACAAATAATTGTGTGGACCCAACGACCTAGCCCACATGGTCTTCCCTGTTCGACTATCACCCTCTACCACAATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTCACCACGTTCTCGGAAGCCCATTCCTCAAGTTCTCCGGGAACTTGATCAAAAGAAGAAGAACAAAAAGGAGAAACATAAACCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTTGGGAGTTTTTCCCTTATTATTGCTAATGCCGCTTCAGCCGAACCCGCATTTAAGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAAGCGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGCTCCCTGGAAATTTGGGTGGAATTGGGTGGCGTTATTAGGGTGAGTGACATCGAAATGTCTTGGGTTTCTGAACTGGGATTTACCTTTGAATTGGATGAGCGCGTGGATATGCAAGCTCCCATCTTGGTGTTTTTCCTGTGAAACTCTGATAAATAATTTATCAGAAGGGCAATTTATAGATTTCAGAATTTCTAGCATTTGTTCTTTCGGTATTGGGCATTTTGGATAAGTGAGGAAGATATTTTTGGCTTTAACTTGGAATTGGTGTGTACGTGTCATTTTGAATTGGGAGCTCTTCAAAACTCTACGGAATGGGGTGCTTTGGGTGCCTATTTATAGTGAGCTCCCAAATGGCATTGACGTAATTACGGAGAAAATTCCAAAATTTTCCCGCTCCTAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_690912.1
|
|
Location
|
146-502 |
|
Gene Name
|
V2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCATTATTAAACGAGTTCCCCGAAACCGTTCACGGTTTTCGGTGTATGCTAGCCGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGATACTTTGGGGTACGACTTAATCCGGGATTTAATATCAGTCATCAGGGCCAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQEAQDVQDVQKPRCS |
|
NCBI Accession
|
NP_690913.1
|
|
Location
|
306-1076 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGCTGTGAAGGCCCGTGTAAGGTCCAGTCTTTTGAGTCTAGACATGATGTCCAACACATAGGCAAAGTCATGTGTGTTAGTGATGTTACTCGTGGAACTGGGCTGACCCATCGAGTTGGTAAAAGGTTTTGTGTTAAGTCCGTCTATGTTCTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCACACGAATAGTGTTATGTTCTTCCTTGTTAGAGATCGTAGGCCCGTAGATAAGCCCCAAGACTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCGACTGTGAAGAACGTGCATCGTGATAGGTATCAGGTGCTCAGGAAGTGGCATGCTACTGTGACAGGTGGTCAATATGCATCGAAGGAGCAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTACGTTGTGTATAACCAGCAGGAGGCTGGCAAGTATGAAAACCACACTGAGAATGCTTTGATGTTGTACATGGCGTGTACTCATGCTTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCCGTAACAAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
NP_690914.1
|
|
Location
|
1073-1477 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGCACCCATCACTGCAGCTCAGGCCAAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACCGGCCATTCCTAATGAACCACGACATCATAACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTTTTGCAGTTTTTAAATAATTTTGCTGTAATTAGTATAAACAATGTAATTAGAGCAGTCGATCATGTATTATGGAATGTAGTAGCGCAAACAATTTATGTACAAAGTTCAAACATAATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGAPITAAQAKNGVFIWEITNPLYFKITEHHNRPFLMNHDIITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINNVIRAVDHVLWNVVAQTIYVQSSNIIKFNIY |
|
NCBI Accession
|
NP_690915.1
|
|
Location
|
1218-1622 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGACCTAGACTGCGGCTGTTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGCACCCATCACTGCAGCTCAGGCCAAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACCGGCCATTCCTAATGAACCACGACATCATAACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAG |
|
Protein Sequence
|
MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSGQEWRVYLGDNKSPVFQDNRAPQPAIPNEPRHHNSPSTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGI |
|
NCBI Accession
|
NP_690916.1
|
|
Location
|
1525-2610 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGACACGTACACACCAATTCCAAGTTAAAGCCAAAAATATCTTCCTCACTTATCCAAAATGCCCAATACCGAAAGAACAAATGCTAGAAATTCTGAAATCTATAAATTGCCCTTCTGATAAATTATTTATCAGAGTTTCACAGGAAAAACACCAAGATGGGAGCTTGCATATCCACGCGCTCATCCAATTCAAAGGTAAATCCCAGTTCAGAAACCCAAGACATTTCGATGTCACTCACCCTAATAACGCCACCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCGCTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAAATGCGGGTTCGGCTGAAGCGGCATTAGCAATAATAAGGGAAAAACTCCCAAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCGTTGGAGGTTTATGTTTCTCCTTTTTGTTCTTCTTCTTTTGATCAAGTTCCCGGAGAACTTGAGGAATGGGCTTCCGAGAACGTGGTGAGTGCCGCTGCGCGGCCATTGAGACCCATGAGTATTGTGGTAGAGGGTGATAGTCGAACAGGGAAGACCATGTGGGCTAGGTCGTTGGGTCCACACAATTATTTGTGTGGTCATCTAGACCTTAGCCCTAAGGTCTACAGTAATGACGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAACACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACGAAATACGGAAAGCCAGTGCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCGCATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCCGCACTCAAAAATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGA |
|
Protein Sequence
|
MTRTHQFQVKAKNIFLTYPKCPIPKEQMLEILKSINCPSDKLFIRVSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNATQFHPNFQGAKSSSDVKSYIEKDGDYIDWGRFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPLEVYVSPFCSSSFDQVPGELEEWASENVVSAAARPLRPMSIVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPHSSYKEFLDEEKNSALKNWALKNATFITLEGPLYSGSNQSAAQASQEGDQASSR |
|
NCBI Accession
|
NP_690917.1
|
|
Location
|
2196-2453 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGAGCTTGCATATCCACGCGCTCATCCAATTCAAAGGTAAATCCCAGTTCAGAAACCCAAGACATTTCGATGTCACTCACCCTAATAACGCCACCCAATTCCACCCAAATTTCCAGGGAGCTAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCGCTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAA |
|
Protein Sequence
|
MGACISTRSSNSKVNPSSETQDISMSLTLITPPNSTQISRELSPAPMSSPTSRRTVITSTGVAFRSMEDLLEEVNRQLMMLQQRP |