Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000842765.1 |
Release date | 2015/2/12 |
Submitter | Torres-Pacheco,I., Garzon-Tiznado,J.A., Brown,J.K., Becerra-Flora,A., Rivera-Bustamante,R.F., Mendez-Lozano,J., Fauquet,C.M. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_671456.1 |
---|---|
Location | 400-1170 |
Gene Name | BR1 |
Protein Name | nuclear shuttle |
Coding Region | ATGTATCAGTCAAGGTATACACGTGTGGCACCCTATGTGCAGAGACGATTTCAACGACGTAATCAAGTGTTTAAGCGCACAGTATCAGGGAGACGTAATGACGTTAAACGTCGATCAAGTCAATTAATTAAGAGTAATGAGGAACCTAAGATTACGTCGCAGCGCATACATGAAAACCAATATGGCCCTGAGTTCGTTATGGCGCATAATGCAGCTATTTCCACGTTCATTAATTATCCTGTACTTGGTAAGACTCAACCTAATCGAAGCAGGTCGTATATTAAGCTTAAACGTTTATCGTTTAAGGGAACCGTTAAGATTGAACGTGTGCATGCTGACGTGAACATGGACGGGGTCTGTCCTAAAATTGAAGGCGTCTTCTCACTGGTTATTGTGGTTGATCGTAAACCACATTTAAGTTCGTCTGGGGTGTTGCATACATTTGATGAAGTATTCGGTGCAAGAATCCACAGCCATGGGAACTTAGCCATTACAACATCTTTGAAAGATCGGTATTACGTCCGGCATGTATTGAAGCGCGTATTGTCAGTTGAGAAGGACACTGTCATGGTAGATATCGAAGGATGCACATCCCTTTCTAACAAGCGCTTCAACTGCTGGTCTACATTTAAGGATTTAGAACATGACACATGTAACGGTGTTTATGCGAATATAAGCAAGAATGCCATATTAGTTTACTATTGCTGGATGTCGGATGTCATGTCTAAAGCATCCACATTTGTATCATATGACCTAGAATATGTAGGGTGA |
Protein Sequence | MYQSRYTRVAPYVQRRFQRRNQVFKRTVSGRRNDVKRRSSQLIKSNEEPKITSQRIHENQYGPEFVMAHNAAISTFINYPVLGKTQPNRSRSYIKLKRLSFKGTVKIERVHADVNMDGVCPKIEGVFSLVIVVDRKPHLSSSGVLHTFDEVFGARIHSHGNLAITTSLKDRYYVRHVLKRVLSVEKDTVMVDIEGCTSLSNKRFNCWSTFKDLEHDTCNGVYANISKNAILVYYCWMSDVMSKASTFVSYDLEYVG |
NCBI Accession | NP_671457.1 |
---|---|
Location | 1227-2096 |
Gene Name | BL1 |
Protein Name | viral movement protein |
Coding Region | ATGGAAGCGGGGTTGGCGAGTGCTCCTAGCGCCTTTAATTATCTTGAATCTCATAGAGATGAATACCAGCTGTCGCATGATCTGACKGAGATAGTCCTTCAGTTTCCTTCCACGGCATCACAGCTAACGGCACGACTAAGTCGCAGCTGTATGAAAATTGACCACTGCGTCATAGAATATAGACAGCAGGTTCCGATTAACGCCTCTGGGTCGGTCATTGTGGAGATTCATGACCAAAGAATGACGGATAACGAGTCATTACAAGCATCTTGGACATTTCCAATACGATGCAACATAGACCTACATTACTTCTCGTCGTCATTCTTTTCACTGAAGGACCCCATTCCATGGAGATTATACTACCGAGTGTCCGACACAAATGTACATCAAAGGACTCATTTTGCCAAGTTCAAAGGCAAGCTAAAACTCTCAACAGCTAAGCACTCGGTAGATATACCATTCCGGGCTCCCACTGTCAAAATACTATCTAAACAATTCTCCCATAACGATGTGGACTTCTCCCATGTGGACTATGGCCAGTGGGAGCGCAAAGTCTTACGGTCCAATTCAATGTCAAGGGTTGGGCTTACAGGCCCAATTGAATTGAGGCCAGGTGAGTCATGGGCTTCCAGGAGCACCGTGGGTACAAGTAGTCCTTCAAGGGATTCGAAGATGCACCCCTATAGAGAGCTTCATCAATTGGGCCCAAGCGTATTAGACCCAGGTGATTCCGCATCACAGGTTGGTCTACAAAGAGCCCACTCCAATATAACAATGTCAATGGCCCAATTGAACGAACTTGTTAGGACTACGGTTCACGAATGTATTAGTAACAATTGTAACCCGGCACAGCCGAAGTCTTTGCAATAA |
Protein Sequence | MEAGLASAPSAFNYLESHRDEYQLSHDLTEIVLQFPSTASQLTARLSRSCMKIDHCVIEYRQQVPINASGSVIVEIHDQRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWRLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFSHNDVDFSHVDYGQWERKVLRSNSMSRVGLTGPIELRPGESWASRSTVGTSSPSRDSKMHPYRELHQLGPSVLDPGDSASQVGLQRAHSNITMSMAQLNELVRTTVHECISNNCNPAQPKSLQ |
NCBI Accession | NP_671472.1 |
---|---|
Location | 208-963 |
Gene Name | CP |
Protein Name | coat protein |
Coding Region | ATGGTTAAGCGGGATGCCCCATGGCGTTTAATGGCGGGGACCTCTAAGGTTTCCGGCTCTGCGAATTATTCACGTGGCACGGGTATGGGGCCTAAATTCGATAAGGCCGCTGCTTGGGTTAACAGGCCCATGTACAGGAAGCCCAGTATATATCGTACGTATAGAAGCCCAGATGTGCCTAGASSATGTGAAGGGCCATGTAAGGTCCAGTCCTTCGAGCAGCGGCATGATATCTCGCATGTTGGCAAGGTCATGTGCATTTCTGACGTGACACGTGGTAATGGTATTACCCATCGTGTAGGCAAGCGTTTCTGCGTCAAGTCTGCATACGTTCTGGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACCAACAGCGTCATGTTCTGGCTCGTGAGAGATAGGAGACCATATGGTACCCCTATGGACTTTGGTCAGGTGTTCAACATGTATGACAACGAGCCCAGTACAGCTACTGTGAAGAACGATTTGCGTGATCGTTTCCAAGTCATGCACAGGTTCTCGGCTAAGGTCACAGGTGGACAGTATGCCAGCAACGAGCAGGCATTGGTTAGGCGTTTCTGGAAGGTGAACAACTACGTCGTGTACAACCATCAGGAAGCTGGCAAATACGAGAATCATACTGAGAACGCCCTGCTATTGTATATGGCATGTACACATGCCTCTAACCCTGTGTACGCGACATTGAAAATTCGAATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence | MVKRDAPWRLMAGTSKVSGSANYSRGTGMGPKFDKAAAWVNRPMYRKPSIYRTYRSPDVPRXCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSAYVLGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRFQVMHRFSAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | NP_671473.1 |
---|---|
Location | 960-1358 |
Gene Name | AL3 |
Protein Name | AL3 protein |
Coding Region | ATGGATTCACGCACAGGGGAGAGCATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATTTGGGAGGTTCCAAATCCCCTATTTTTCAGGATACAGCACGTGGAGGACCCGTTGTTCACCAGAACCAGGATATACCACATCGTAGTCCGGTTCAACCACAACCTACGTCGAGCATTAGCTCTCCACAAGGCATTCCTCCATTTCCAAGTCTGGACGACTTCGATGACAGCTTCTGGGACGACATATTTAAGTAGATTCAAATTTCGCGTCATGTTGTATTTACATACGCTAGGGGCCATAGGCATAAACAATGTAATCAGAGCTGTTCGTTTTGCGACGGACAAATCCTATGTAAATTATGTACTTGAGAATCATGAAATAAAATGCAAACTTTATTAA |
Protein Sequence | MDSRTGESITVHQAENSVFIWEVPNPLFFRIQHVEDPLFTRTRIYHIVVRFNHNLRRALALHKAFLHFQVWTTSMTASGTTYLSRFKFRVMLYLHTLGAIGINNVIRAVRFATDKSYVNYVLENHEIKCKLY |
NCBI Accession | NP_671474.1 |
---|---|
Location | 1105-1494 |
Protein Name | trap |
Coding Region | ATGCTCAATTCGTCATCCTCCACGCTCCCCTCTATAAAAGCACAGCACAGGATAGCTAAGAAGCGACCTATTCGCAGACGACGCATAGACCTAAACTGCGGCTGCTCTATCTTTCTCCACATCAACTGCGCTAATAATGGATTCACGCACAGGGGAGAGCATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATTTGGGAGGTTCCAAATCCCCTATTTTTCAGGATACAGCACGTGGAGGACCCGTTGTTCACCAGAACCAGGATATACCACATCGTAGTCCGGTTCAACCACAACCTACGTCGAGCATTAGCTCTCCACAAGGCATTCCTCCATTTCCAAGTCTGGACGACTTCGATGACAGCTTCTGGGACGACATATTTAAGTAG |
Protein Sequence | MLNSSSSTLPSIKAQHRIAKKRPIRRRRIDLNCGCSIFLHINCANNGFTHRGEHHCASGREFRFYLGGSKSPIFQDTARGGPVVHQNQDIPHRSPVQPQPTSSISSPQGIPPFPSLDDFDDSFWDDIFK |
NCBI Accession | NP_671475.1 |
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Location | 1436-2482 |
Gene Name | REP |
Protein Name | Rep |
Coding Region | ATGCCACTACCACCAAAATCCTTTCGTTTACAATGTAAAAACATTTTCTTAACATATCCACAATGCGATATCCCAAAGGATGAAGCTCTCGAAATGCTCCGTAATTTAAAATGGGCAGTGGTAAAACCCATCTATCTCCGGGTATCACGAGAGGAGCATTCCGATGGGTTCCCGCACTTGCACTGTCTAATCCAGTTGACTGGAAAATGCAACATCAAAGATGCCCGGTTCTTCGACATTACTCACCCCCGGAGATCTGCCCAGTTTCATCCAAACGTTCAGGCATCCAAGGACGCAAATGCCGTTAAAAATTACATAACAAAAGATGGTGATTATTGTGAATCTGGGCAGTACAAAGTTTCCGGGGGGTCAAAAGCAAATAAAGACGACGTCTACCATAACGCTGTAAATGCTGCAAGTGCGGGGGAGGCGCTCGACATAATCAAAGCTGGTGATCCGAAAACGTTCATTGTTAGTTATCATAACATAAAGGCTAACATCGAGCGCCTATTTACAACTCCTCCTATGCCATGGACTCCTCCTTATCCATTATCCTCGTTTAACAACGTTCCTGAGGATATGCAACATTGGGTTGCTGAATATTTTGGTCGGAGTTGTGCGCGGCCAGATAGACCGATTAGTATTGTCATTGAGGGTGATTCGCGATGCGGCAAGACAATGTGGGCACGTGCACTAGGCCCACATAATTATTTGAGCGGTCATCTTGATTTCAATGCAAAGGTCTATTCAAACTATGTGGAGTATAACGTCATTGATGATATCACGCCCCAATATCTAAAGATGAAACACTGGAAAGAGCTTATTGGGGCCCAAAAAGACTGGCAGTCCAACTGTAAATACGGAAAGCCAGTTCAAATTAAAGGCGGGATACCATCAATCGTGCTGTGCAATCCAGGGGAAGGTAGCAGCTATATAGCTTTCCTCAACAAAGAGGAAAATGCAGAATTAAGAGCGTGGACATTAAAAAATGCTCAATTCGTCATCCTCCACGCTCCCCTCTATAAAAGCACAGCACAGGATAGCTAA |
Protein Sequence | MPLPPKSFRLQCKNIFLTYPQCDIPKDEALEMLRNLKWAVVKPIYLRVSREEHSDGFPHLHCLIQLTGKCNIKDARFFDITHPRRSAQFHPNVQASKDANAVKNYITKDGDYCESGQYKVSGGSKANKDDVYHNAVNAASAGEALDIIKAGDPKTFIVSYHNIKANIERLFTTPPMPWTPPYPLSSFNNVPEDMQHWVAEYFGRSCARPDRPISIVIEGDSRCGKTMWARALGPHNYLSGHLDFNAKVYSNYVEYNVIDDITPQYLKMKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYIAFLNKEENAELRAWTLKNAQFVILHAPLYKSTAQDS |
1 |
Genetic and Phenotypic Variation of the Pepper golden mosaic virus Complex. Brown JK, et al. Phytopathology. 2005 Oct;95(10):1217-24. doi: 10.1094/PHYTO-95-1217. PMID: 18943475 |
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2 |
Méndez-Lozano J, et al. Plant Dis. 2001 Dec;85(12):1291. doi: 10.1094/PDIS.2001.85.12.1291A. PMID: 30831814 |
3 |
Vargas-Salinas M, et al. 3 Biotech. 2021 Mar;11(3):114. doi: 10.1007/s13205-021-02653-7. Epub 2021 Feb 3. PMID: 33604230 |
4 |
Trejo-Saavedra DL, et al. Biol Res. 2013;46(4):333-40. doi: 10.4067/S0716-97602013000400004. PMID: 24510135 |
5 |
Méndez-Lozano J, et al. Phytopathology. 2003 Mar;93(3):270-7. doi: 10.1094/PHYTO.2003.93.3.270. PMID: 18944336 |
6 |
Pepper golden mosaic virus Affecting Tomato Crops in the Baja California Peninsula, Mexico. Holguín-Peña RJ, et al. Plant Dis. 2004 Feb;88(2):221. doi: 10.1094/PDIS.2004.88.2.221A. PMID: 30812435 |
7 |
Castro RM, et al. Plant Pathol J. 2013 Sep;29(3):285-93. doi: 10.5423/PPJ.OA.12.2012.0182. PMID: 25288955 |
8 |
Méndez-Lozano J, et al. Plant Dis. 2006 Jan;90(1):109. doi: 10.1094/PD-90-0109B. PMID: 30786488 |
9 |
Carrillo-Tripp J, et al. Phytopathology. 2007 Jan;97(1):51-9. doi: 10.1094/PHYTO-97-0051. PMID: 18942936 |
10 |
Musser RO, et al. J Insect Sci. 2014 Jan 1;14:230. doi: 10.1093/jisesa/ieu092. Print 2014. PMID: 25525099 |