Pedilanthus leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000868385.1
Isolate Pakistan: Rahim Yar Khan
Release date 2015/2/13
Submitter Tsai,W.-S., Green,S.K., Behjatnia,S.A.A., Rezaian,A., Iram,S., Mansoor
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_008299
ACCGGATGGCCGCGCTTTTTTTATGGCCCCCACAGAGCACTAACTGACAATGACATGTGGACCAATGAGAATCGTTCCTCGTAGCCTAGTTATTTCATGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTCACATTCATTATGTGGGATCCGTTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATATTTGCAGTTAGTAGAAAATGCGTATTCCCCAGATACTTTGGGATACGATTTAATTAGGGATTTAATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTAGGCAAGAGATTCTGTGTCAAGTCCGTTTATGTTTTGGGCAAGATTTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTGATGTTTTTTCTAGTTAGAGACCGTAGACCAGTTGATAAACCTCAGGATTTTGGAGAGGTTTTTAATATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGTATGCAACTGTCACTGGTGGACAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGGAAGTATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAATAAATATTGAATTTTATTGAAGATGATTGTTTTACATATACAATATGCTCTAATACATTCCATAATACATGATCAACTGCTCTAATTACATTGTTAATACTGATAACTCCTAGATTATCTAAATACTTAAGCACTTGTGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATTCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGGAATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCCCAGATAAACACGCCATTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTCGTGGCAGGCTAAGGCTATGAAGTATGAACACCCACACGGGAGATCAACACGACGACGCCTGGTCCCTTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAATGCCCAATTTTTGAGTGCAGAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAAACCTTTGGACTAAGGTCTAGATGACCACACAGATAATTGTGTGGACCCAGTGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCCTCTATGACAATACTTTTAGGTCTCAATGGCCGCGCAGCGGCACCCACGACGTTCTCAGCAGCCCATTCTTCAAGTTCTTCCGGAACTTGATCAAAAGAAGAAGAAGAAAAAGGAGAAACATAAACCTCCATGGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGAAGTACATAATCTTTTGGTGCTAATTCTTTAATTACTCTAAGAGCTTCTGACTTACTGCCTGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGACTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGTATTTTCCCTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGATTTTAATGTATTTTTTGTTTACTGGGGTTTGTAGGTTTTGGAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAGCACTTGGGATAAGTGAGGAAATAATTTTTCGAATTAATAAGGAAACGCTTTGGGGGCATGTTGACCAAGTGAGAGGACCCGATTGACCGCTCTTGCAACTCTCCCCTGTATATCGGGTCTCAATATATAGTGAGACCCAAATGGCATTATTGTAATTTGGATAACAGATTCAAAATTCTGACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_717914.1
Location 97-501
Protein Name V2
Coding Region ATGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTCACATTCATTATGTGGGATCCGTTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATATTTGCAGTTAGTAGAAAATGCGTATTCCCCAGATACTTTGGGATACGATTTAATTAGGGATTTAATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG
Protein Sequence MVPPINLVRKLCFTFIMWDPLLNEFPETVHGFRCMLAVKYLQLVENAYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTSPSQFRQPICEPCCCPHCPRHKGKGMGEQAHEPKAQDVQDVQKPRCS

NCBI Accession YP_717915.1
Location 305-1075
Protein Name CP
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTAGGCAAGAGATTCTGTGTCAAGTCCGTTTATGTTTTGGGCAAGATTTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTGATGTTTTTTCTAGTTAGAGACCGTAGACCAGTTGATAAACCTCAGGATTTTGGAGAGGTTTTTAATATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGTATGCAACTGTCACTGGTGGACAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGGAAGTATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_717916.1
Location 1072-1476
Protein Name C3
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTCATGAACCAAGACATCATCACTGTCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACACAAGTGCTTAAGTATTTAGATAATCTAGGAGTTATCAGTATTAACAATGTAATTAGAGCAGTTGATCATGTATTATGGAATGTATTAGAGCATATTGTATATGTAAAACAATCATCTTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGELITAAQAQNGVFIWEVQNPLYFKITEHHNRPFLMNQDIITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLDNLGVISINNVIRAVDHVLWNVLEHIVYVKQSSSIKFNIY

NCBI Accession YP_717917.1
Location 1217-1621
Protein Name C2
Coding Region ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAAGGGACCAGGCGTCGTCGTGTTGATCTCCCGTGTGGGTGTTCATACTTCATAGCCTTAGCCTGCCACGACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTCATGAACCAAGACATCATCACTGTCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA
Protein Sequence MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSTEWRVYLGGSKSPLFQDNRAPQQAIPHEPRHHHCPDTVQSQPEESVGNTQMFPSLPNLDDLTASDWSFLKGL

NCBI Accession YP_717918.1
Location 1524-2606
Protein Name Rep
Coding Region ATGCCCCCAAAGCGTTTCCTTATTAATTCGAAAAATTATTTCCTCACTTATCCCAAGTGCTCTCTCACCAAAGAGGAAGCACTTTCCCAATTCCAAAACCTACAAACCCCAGTAAACAAAAAATACATTAAAATCTGCAGAGAGTTTCATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGAAAATACAAGTGCCAAAATCAGCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAGTCAGCCAACGACGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAAGCTCTTAGAGTAATTAAAGAATTAGCACCAAAAGATTATGTACTTCAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCCATGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCTTTTGATCAAGTTCCGGAAGAACTTGAAGAATGGGCTGCTGAGAACGTCGTGGGTGCCGCTGCGCGGCCATTGAGACCTAAAAGTATTGTCATAGAGGGTGATAGTCGTACGGGGAAGACAATGTGGGCCAGGTCACTGGGTCCACACAATTATCTGTGTGGTCATCTAGACCTTAGTCCAAAGGTTTACAGCAACGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAACTCAAGCTATAAAGAGTTTTTGGATGAGGAGAAGAATTCTGCACTCAAAAATTGGGCATTAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAAGGGACCAGGCGTCGTCGTGTTGA
Protein Sequence MPPKRFLINSKNYFLTYPKCSLTKEEALSQFQNLQTPVNKKYIKICREFHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDYVLQFHNLNANLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVGAAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPLYSGSNQSAAQASQERDQASSC

NCBI Accession YP_717919.1
Location 2162-2458
Protein Name C4
Coding Region ATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGAAAATACAAGTGCCAAAATCAGCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAGTCAGCCAACGACGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAAGCTCTTAGAGTAA
Protein Sequence MKMGNLIFTCSSSSRENTSAKISDSSTWYPQPGQHISIRTFRELNQAQTSSPIWRRTETPSTGESFRSMEDLQEGDNSQPTTLTPQRLTQAVSQKLLE

References More References in PubMed

1

Characterization, phylogeny and recombination analysis of Pedilanthus leaf curl virus-Petunia isolate and its associated betasatellite.

Shakir S, et al.  Virol J. 2018 Aug 31;15(1):134. doi: 10.1186/s12985-018-1047-y.

PMID: 30165872
2

Codiaeum variegatum in Pakistan harbours pedilanthus leaf curl virus and papaya leaf curl virus as well as a newly identified betasatellite.

Akram A, et al.  Arch Virol. 2020 Aug;165(8):1877-1881. doi: 10.1007/s00705-020-04633-3. Epub 2020 May 23.

PMID: 32447620
3

Interaction of eukaryotic proliferating cell nuclear antigen (PCNA) with the replication-associated protein (Rep) of cotton leaf curl Multan virus and pedilanthus leaf curl virus.

Shakir S, et al.  3 Biotech. 2021 Jan;11(1):14. doi: 10.1007/s13205-020-02499-5. Epub 2021 Jan 2.

PMID: 33442513
4

The antisense 5' end of the V2 gene confers enhanced resistance against the monopartite begomovirus cotton leaf curl Kokhran virus-Burewala strain.

Ali I, et al.  Acta Virol. 2019;63(1):26-35. doi: 10.4149/av_2019_101.

PMID: 30879310
5

Molecular characterization of a new begomovirus infecting Mirabilis jalapa in northern India.

Kulshreshtha A, et al.  Arch Virol. 2017 Jul;162(7):2163-2167. doi: 10.1007/s00705-017-3330-4. Epub 2017 Mar 24.

PMID: 28342034
6

Complete nucleotide sequences of two begomoviruses infecting Madagascar periwinkle (Catharanthus roseus) from Pakistan.

Ilyas M, et al.  Arch Virol. 2013 Feb;158(2):505-10. doi: 10.1007/s00705-012-1498-1. Epub 2012 Oct 12.

PMID: 23065111
7

Association of a novel begomovirus species with fenugreek yellow vein disease in India.

Kumar M, et al.  Mol Biol Rep. 2023 Nov;50(11):9203-9211. doi: 10.1007/s11033-023-08806-6. Epub 2023 Sep 30.

PMID: 37776416
8

Complete genome sequence of hollyhock vein yellowing virus, a novel monopartite begomovirus infecting hollyhock in Pakistan.

Khan A, et al.  Arch Virol. 2021 Sep;166(9):2607-2610. doi: 10.1007/s00705-021-05134-7. Epub 2021 Jun 11.

PMID: 34115211
9

Characterization of a Begomovirus-Betasatellite Complex, Producing Defective Molecules in Spinach (Spinacia oleracea L.), a New Host for Begomovirus and Betasatellite Complex in Pakistan.

Tahir MN, et al.  Plant Pathol J. 2017 Oct;33(5):514-521. doi: 10.5423/PPJ.NT.01.2017.0009. Epub 2017 Oct 1.

PMID: 29018315