Pedilanthus leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000868385.1 |
| Isolate |
Pakistan: Rahim Yar Khan |
| Release date |
2015/2/13 |
| Submitter |
Tsai,W.-S., Green,S.K., Behjatnia,S.A.A., Rezaian,A., Iram,S., Mansoor |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCTTTTTTTATGGCCCCCACAGAGCACTAACTGACAATGACATGTGGACCAATGAGAATCGTTCCTCGTAGCCTAGTTATTTCATGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTCACATTCATTATGTGGGATCCGTTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATATTTGCAGTTAGTAGAAAATGCGTATTCCCCAGATACTTTGGGATACGATTTAATTAGGGATTTAATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTAGGCAAGAGATTCTGTGTCAAGTCCGTTTATGTTTTGGGCAAGATTTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTGATGTTTTTTCTAGTTAGAGACCGTAGACCAGTTGATAAACCTCAGGATTTTGGAGAGGTTTTTAATATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGTATGCAACTGTCACTGGTGGACAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGGAAGTATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAATAAATATTGAATTTTATTGAAGATGATTGTTTTACATATACAATATGCTCTAATACATTCCATAATACATGATCAACTGCTCTAATTACATTGTTAATACTGATAACTCCTAGATTATCTAAATACTTAAGCACTTGTGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATTCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGGAATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCCCAGATAAACACGCCATTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTCGTGGCAGGCTAAGGCTATGAAGTATGAACACCCACACGGGAGATCAACACGACGACGCCTGGTCCCTTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAATGCCCAATTTTTGAGTGCAGAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAAACCTTTGGACTAAGGTCTAGATGACCACACAGATAATTGTGTGGACCCAGTGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCCTCTATGACAATACTTTTAGGTCTCAATGGCCGCGCAGCGGCACCCACGACGTTCTCAGCAGCCCATTCTTCAAGTTCTTCCGGAACTTGATCAAAAGAAGAAGAAGAAAAAGGAGAAACATAAACCTCCATGGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGAAGTACATAATCTTTTGGTGCTAATTCTTTAATTACTCTAAGAGCTTCTGACTTACTGCCTGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGACTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGTATTTTCCCTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGATTTTAATGTATTTTTTGTTTACTGGGGTTTGTAGGTTTTGGAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAGCACTTGGGATAAGTGAGGAAATAATTTTTCGAATTAATAAGGAAACGCTTTGGGGGCATGTTGACCAAGTGAGAGGACCCGATTGACCGCTCTTGCAACTCTCCCCTGTATATCGGGTCTCAATATATAGTGAGACCCAAATGGCATTATTGTAATTTGGATAACAGATTCAAAATTCTGACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_717914.1
|
|
Location
|
97-501 |
|
Protein Name
|
V2 |
|
Coding Region
|
ATGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTCACATTCATTATGTGGGATCCGTTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATATTTGCAGTTAGTAGAAAATGCGTATTCCCCAGATACTTTGGGATACGATTTAATTAGGGATTTAATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG |
|
Protein Sequence
|
MVPPINLVRKLCFTFIMWDPLLNEFPETVHGFRCMLAVKYLQLVENAYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTSPSQFRQPICEPCCCPHCPRHKGKGMGEQAHEPKAQDVQDVQKPRCS |
|
NCBI Accession
|
YP_717915.1
|
|
Location
|
305-1075 |
|
Protein Name
|
CP |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTAGGCAAGAGATTCTGTGTCAAGTCCGTTTATGTTTTGGGCAAGATTTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTGATGTTTTTTCTAGTTAGAGACCGTAGACCAGTTGATAAACCTCAGGATTTTGGAGAGGTTTTTAATATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGTATGCAACTGTCACTGGTGGACAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGGAAGTATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
|
NCBI Accession
|
YP_717916.1
|
|
Location
|
1072-1476 |
|
Protein Name
|
C3 |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTCATGAACCAAGACATCATCACTGTCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACACAAGTGCTTAAGTATTTAGATAATCTAGGAGTTATCAGTATTAACAATGTAATTAGAGCAGTTGATCATGTATTATGGAATGTATTAGAGCATATTGTATATGTAAAACAATCATCTTCAATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGELITAAQAQNGVFIWEVQNPLYFKITEHHNRPFLMNQDIITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLDNLGVISINNVIRAVDHVLWNVLEHIVYVKQSSSIKFNIY |
|
NCBI Accession
|
YP_717917.1
|
|
Location
|
1217-1621 |
|
Protein Name
|
C2 |
|
Coding Region
|
ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAAGGGACCAGGCGTCGTCGTGTTGATCTCCCGTGTGGGTGTTCATACTTCATAGCCTTAGCCTGCCACGACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTCATGAACCAAGACATCATCACTGTCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA |
|
Protein Sequence
|
MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSTEWRVYLGGSKSPLFQDNRAPQQAIPHEPRHHHCPDTVQSQPEESVGNTQMFPSLPNLDDLTASDWSFLKGL |
|
NCBI Accession
|
YP_717918.1
|
|
Location
|
1524-2606 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGCCCCCAAAGCGTTTCCTTATTAATTCGAAAAATTATTTCCTCACTTATCCCAAGTGCTCTCTCACCAAAGAGGAAGCACTTTCCCAATTCCAAAACCTACAAACCCCAGTAAACAAAAAATACATTAAAATCTGCAGAGAGTTTCATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGAAAATACAAGTGCCAAAATCAGCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAGTCAGCCAACGACGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAAGCTCTTAGAGTAATTAAAGAATTAGCACCAAAAGATTATGTACTTCAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCCATGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCTTTTGATCAAGTTCCGGAAGAACTTGAAGAATGGGCTGCTGAGAACGTCGTGGGTGCCGCTGCGCGGCCATTGAGACCTAAAAGTATTGTCATAGAGGGTGATAGTCGTACGGGGAAGACAATGTGGGCCAGGTCACTGGGTCCACACAATTATCTGTGTGGTCATCTAGACCTTAGTCCAAAGGTTTACAGCAACGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAACTCAAGCTATAAAGAGTTTTTGGATGAGGAGAAGAATTCTGCACTCAAAAATTGGGCATTAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAAGGGACCAGGCGTCGTCGTGTTGA |
|
Protein Sequence
|
MPPKRFLINSKNYFLTYPKCSLTKEEALSQFQNLQTPVNKKYIKICREFHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDYVLQFHNLNANLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVGAAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPLYSGSNQSAAQASQERDQASSC |
|
NCBI Accession
|
YP_717919.1
|
|
Location
|
2162-2458 |
|
Protein Name
|
C4 |
|
Coding Region
|
ATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGAAAATACAAGTGCCAAAATCAGCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAGTCAGCCAACGACGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAAGCTCTTAGAGTAA |
|
Protein Sequence
|
MKMGNLIFTCSSSSRENTSAKISDSSTWYPQPGQHISIRTFRELNQAQTSSPIWRRTETPSTGESFRSMEDLQEGDNSQPTTLTPQRLTQAVSQKLLE |