Beet curly top Iran virus


Basic Information

Genus Becurtovirus
NCBI Assembly GCF_000879795.1
Isolate Iran: Kerman
Release date 2015/2/22
Submitter Yazdi,H.R., Heydarnejad,J., Massumi,H., Bolok Yazdi,H.R., Hosseini Abhari,E.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_010417
CCCCGCGTTTACCTTTCCACGTGGCGTATGCTGAGTGGGCGGACGGTTGAGTGGGGAACACGCTTTACTTTAAATTAAAGTAAAGTAGCACTAAGTGGGACCCACTTTTTTTATTTCTTTAAAGACTTTCTTTTTAAGTCTTCTAGATGCGTATATTATACGTATAAATGATGGTCTGTATTCCCGACTGGTTATTTCTACTTTTCGTATTTAGTACGATTCTTCAGTCGGGAATTAATTTCTATGGTACCTTTCAGAGTGAGCGAATTTCCGCGAAGCTATCCAGCCTTGCTAGCCGTTTCGACGAGCTGTTTCTTGCGTTACAACAAGTGGTGTTTGCTCGGAATCGAGTCTCAAGTTCGCGAGCCGTTGACTCTAGAGGAAGGCGAGGACTTTCTTCAATTCCAGAAGGAAGTGAAGAAATTGCTGAAGCTTAAGGTTAGTTTTAAGCGTAAGTGTTGTTTGTACGAGGACATATACAAGAAGTATGGCGGTTCAGAGTCAAAAGAGAAAGTATACTCCTCCGGCCAGTTGGACGAGGAAGAGGAAGACGACCGGTGGGAGGACAGTTTGGAAGAAATACCAATGGAAGAGACCGGTGCGAAGTAACCGGGCTGTGAAGTTGAAGATGTATGACGACATGTTAGGTGCATCTGGAGTTGGATCTACCATCAGTAATGATGGGATGATCACTATGTTGAACAACTATGTTCAAGGAATTGGTGATAGCCAGAGGTCAAACAACTTGACCGTTACGAGGCATTTGAAGTTTGATATGTCTCTTATGGCTAGTGGTGCATTTTGGGCGAGTCCTAACTATATGACTCAATATCATTGGGTTATTGTGGATCGTGATGTTGGTTCTACGTTTCCGACTCAGTTGAGTACTATCTTTGATATTCCGACTGGTGGTCAGGCTATGCCTTCCACCTATCGGATTAGGAGGGATGCGAATGAACGATTTATCGTGAAGAAGAAGTGGCAGACTCATCTGATGTCTACTGGTACTGATTATGGAGGAAAGCAGACCTATAAGGCGCCTTCAATGCCTAATTATAAGAAGGCTATGAACATTAATATTCGGAATATCAATGTCAAGACATTGTGGAAGGACACTGGAGGTGGCAAATATGAAGATGTGAAGGAGAATGCTATTCTTTACGTAGTGGTTAATGATAATACTGATAATACAAATATGTATGCTACTTTGTTTGGTAATTGTAGGGCTTATTTCTATTGATTATTAGAAATGCCCAATGATGTTGAAGTTGAATAAAAAATTTATTATTAAATTTGTTTGTGTAAGATTGAAATGTAGATATGTAAATATCTAGTATAATTGCCTTGGAAAACAAAAAACGAAAAAATGATTGCCGGAAAACGAAAAAAAAACCCCTCAGAAATTAGACCCCCGGAAAATCAATATATTTATATTAATCTGCAGCCCATCCACGAAGTGGATGTTACATATTTCGAAGAAATATCTTAACTATACCAAACTTCATCACTTGCTAAGTAATATACATCGCAATTAGCGTAAAACCAATCTTTCATAGATTCACTCATACAAGGTATCCAGTCCATATCTGGATTAGTAATAGCAATACAAGGTCTTCCGCCTTGAATGACTAAGTTTGGTTTATGTTTTATCCAAACACTATAATCTTCGTTACATCCGATAATAGATTTAAACAACTCCTGTTGTATTTTTTGATAGCGGATATCGTCTATTATATGGTATGTAGTGTGGTCTATATCGTATAGAGACCAATCTAATACCATGCCAGACATATAGTGGTGTCGGCCTAGAGATCTTGCCCACTGGGTCTTTCCTGTTCTGGAGGGTCCGCATATGTAGAGACTTCTTGGTCGGACTGGTCTGTTGTCTGGCTCCTGGACAAATTAAGTACGTTAGTGTCTTCACTACATGCTAGATCGCCACTAAGTCGATCTAGGTGGAAGTATTCTTCAAGAGTCATTTGTCTGTCTTGAAGAATTGCTCCCCTGCAATTCTCACATATTTCGTAATGTAAACAATCTGAACTTACGAAATATATATTTTGTTCCGCCCACTCTTTGATTGTGTCAGGTAGCCTAGAGAACTCCGTCCATCTGGGTGTGTAAGGTTGCACAACTGGCCTGAAATGATTGTTGGCGAAGGATAGAATGGAAGGCCATCTGAGAACGAAATCTGTTGGGCAGGACTCTCGTATGTTACTGAAGAACTCCTCCTTGGTGTTGGATGAATCAAGAATTCGTCTCCATTCCACGTTGCTGTTGCCAATACTGTTTGGAGAGCGCCCTCCCAGTCGAAGCTCTCCAAATGTTCTAGGGCTCGTGTCCTCCTTGGTGATATACTCGAATGCTCGCTTTGGGGCGTTGAGTCCGTCGATTCTTGGGTGAATCGTTCGACCGTCTGGGAGTATGATGTTGAAAAACAGGTTCCCATTGACGTCGAGTTTCTTGTCACACTGGATAATACAGTGTGTGTGGAATCCTCCTTCAGGTTGTTCTTCAGTAGGCTGATGATGTTCTAGTGATACTGCAAGGGATAGAATCACATATGATTCTAATAAGGTCTTCAGTTTCTCGAATATATAATCTTTAAAATCCCCACCTATTTGGGAATATGTGAGAAAAGCATTTTTCTTTTGAAAACGTAAATAACCGGGTTGGTTAGGGGTAGGTCTGTTTCTGTTTGGAGCACGTGGCATGTTTGTTTTTGTTTCCCTCTTCCGTACAATGAATGAAAAGAAATTGTATATATGAGAGGAAGAGGAACTTAAGAGGAATGAGGAACTGAAGAGGGAGGTAGAGGGATAAATAGGTAAACGCGGATAAGATT

Gene Information

NCBI Accession YP_001715617.1
Location 168-437
Gene Name V3
Protein Name movement protein
Coding Region ATGATGGTCTGTATTCCCGACTGGTTATTTCTACTTTTCGTATTTAGTACGATTCTTCAGTCGGGAATTAATTTCTATGGTACCTTTCAGAGTGAGCGAATTTCCGCGAAGCTATCCAGCCTTGCTAGCCGTTTCGACGAGCTGTTTCTTGCGTTACAACAAGTGGTGTTTGCTCGGAATCGAGTCTCAAGTTCGCGAGCCGTTGACTCTAGAGGAAGGCGAGGACTTTCTTCAATTCCAGAAGGAAGTGAAGAAATTGCTGAAGCTTAA
Protein Sequence MMVCIPDWLFLLFVFSTILQSGINFYGTFQSERISAKLSSLASRFDELFLALQQVVFARNRVSSSRAVDSRGRRGLSSIPEGSEEIAEA

NCBI Accession YP_001715618.1
Location 244-609
Gene Name V2
Protein Name ss-ds DNA regulator
Coding Region ATGGTACCTTTCAGAGTGAGCGAATTTCCGCGAAGCTATCCAGCCTTGCTAGCCGTTTCGACGAGCTGTTTCTTGCGTTACAACAAGTGGTGTTTGCTCGGAATCGAGTCTCAAGTTCGCGAGCCGTTGACTCTAGAGGAAGGCGAGGACTTTCTTCAATTCCAGAAGGAAGTGAAGAAATTGCTGAAGCTTAAGGTTAGTTTTAAGCGTAAGTGTTGTTTGTACGAGGACATATACAAGAAGTATGGCGGTTCAGAGTCAAAAGAGAAAGTATACTCCTCCGGCCAGTTGGACGAGGAAGAGGAAGACGACCGGTGGGAGGACAGTTTGGAAGAAATACCAATGGAAGAGACCGGTGCGAAGTAA
Protein Sequence MVPFRVSEFPRSYPALLAVSTSCFLRYNKWCLLGIESQVREPLTLEEGEDFLQFQKEVKKLLKLKVSFKRKCCLYEDIYKKYGGSESKEKVYSSGQLDEEEEDDRWEDSLEEIPMEETGAK

NCBI Accession YP_001715619.1
Location 488-1240
Gene Name V1
Protein Name coat protein
Coding Region ATGGCGGTTCAGAGTCAAAAGAGAAAGTATACTCCTCCGGCCAGTTGGACGAGGAAGAGGAAGACGACCGGTGGGAGGACAGTTTGGAAGAAATACCAATGGAAGAGACCGGTGCGAAGTAACCGGGCTGTGAAGTTGAAGATGTATGACGACATGTTAGGTGCATCTGGAGTTGGATCTACCATCAGTAATGATGGGATGATCACTATGTTGAACAACTATGTTCAAGGAATTGGTGATAGCCAGAGGTCAAACAACTTGACCGTTACGAGGCATTTGAAGTTTGATATGTCTCTTATGGCTAGTGGTGCATTTTGGGCGAGTCCTAACTATATGACTCAATATCATTGGGTTATTGTGGATCGTGATGTTGGTTCTACGTTTCCGACTCAGTTGAGTACTATCTTTGATATTCCGACTGGTGGTCAGGCTATGCCTTCCACCTATCGGATTAGGAGGGATGCGAATGAACGATTTATCGTGAAGAAGAAGTGGCAGACTCATCTGATGTCTACTGGTACTGATTATGGAGGAAAGCAGACCTATAAGGCGCCTTCAATGCCTAATTATAAGAAGGCTATGAACATTAATATTCGGAATATCAATGTCAAGACATTGTGGAAGGACACTGGAGGTGGCAAATATGAAGATGTGAAGGAGAATGCTATTCTTTACGTAGTGGTTAATGATAATACTGATAATACAAATATGTATGCTACTTTGTTTGGTAATTGTAGGGCTTATTTCTATTGA
Protein Sequence MAVQSQKRKYTPPASWTRKRKTTGGRTVWKKYQWKRPVRSNRAVKLKMYDDMLGASGVGSTISNDGMITMLNNYVQGIGDSQRSNNLTVTRHLKFDMSLMASGAFWASPNYMTQYHWVIVDRDVGSTFPTQLSTIFDIPTGGQAMPSTYRIRRDANERFIVKKKWQTHLMSTGTDYGGKQTYKAPSMPNYKKAMNINIRNINVKTLWKDTGGGKYEDVKENAILYVVVNDNTDNTNMYATLFGNCRAYFY

NCBI Accession YP_001715620.1
Location 1486-1791
Gene Name C2
Protein Name hypothetical Rep protein
Coding Region ATGTCTGGCATGGTATTAGATTGGTCTCTATACGATATAGACCACACTACATACCATATAATAGACGATATCCGCTATCAAAAAATACAACAGGAGTTGTTTAAATCTATTATCGGATGTAACGAAGATTATAGTGTTTGGATAAAACATAAACCAAACTTAGTCATTCAAGGCGGAAGACCTTGTATTGCTATTACTAATCCAGATATGGACTGGATACCTTGTATGAGTGAATCTATGAAAGATTGGTTTTACGCTAATTGCGATGTATATTACTTAGCAAGTGATGAAGTTTGGTATAGTTAA
Protein Sequence MSGMVLDWSLYDIDHTTYHIIDDIRYQKIQQELFKSIIGCNEDYSVWIKHKPNLVIQGGRPCIAITNPDMDWIPCMSESMKDWFYANCDVYYLASDEVWYS

NCBI Accession YP_001715621.1
Location 1806-2714
Gene Name C1
Protein Name hypothetical RepA protein
Coding Region ATGCCACGTGCTCCAAACAGAAACAGACCTACCCCTAACCAACCCGGTTATTTACGTTTTCAAAAGAAAAATGCTTTTCTCACATATTCCCAAATAGGTGGGGATTTTAAAGATTATATATTCGAGAAACTGAAGACCTTATTAGAATCATATGTGATTCTATCCCTTGCAGTATCACTAGAACATCATCAGCCTACTGAAGAACAACCTGAAGGAGGATTCCACACACACTGTATTATCCAGTGTGACAAGAAACTCGACGTCAATGGGAACCTGTTTTTCAACATCATACTCCCAGACGGTCGAACGATTCACCCAAGAATCGACGGACTCAACGCCCCAAAGCGAGCATTCGAGTATATCACCAAGGAGGACACGAGCCCTAGAACATTTGGAGAGCTTCGACTGGGAGGGCGCTCTCCAAACAGTATTGGCAACAGCAACGTGGAATGGAGACGAATTCTTGATTCATCCAACACCAAGGAGGAGTTCTTCAGTAACATACGAGAGTCCTGCCCAACAGATTTCGTTCTCAGATGGCCTTCCATTCTATCCTTCGCCAACAATCATTTCAGGCCAGTTGTGCAACCTTACACACCCAGATGGACGGAGTTCTCTAGGCTACCTGACACAATCAAAGAGTGGGCGGAACAAAATATATATTTCGTAAGTTCAGATTGTTTACATTACGAAATATGTGAGAATTGCAGGGGAGCAATTCTTCAAGACAGACAAATGACTCTTGAAGAATACTTCCACCTAGATCGACTTAGTGGCGATCTAGCATGTAGTGAAGACACTAACGTACTTAATTTGTCCAGGAGCCAGACAACAGACCAGTCCGACCAAGAAGTCTCTACATATGCGGACCCTCCAGAACAGGAAAGACCCAGTGGGCAAGATCTCTAG
Protein Sequence MPRAPNRNRPTPNQPGYLRFQKKNAFLTYSQIGGDFKDYIFEKLKTLLESYVILSLAVSLEHHQPTEEQPEGGFHTHCIIQCDKKLDVNGNLFFNIILPDGRTIHPRIDGLNAPKRAFEYITKEDTSPRTFGELRLGGRSPNSIGNSNVEWRRILDSSNTKEEFFSNIRESCPTDFVLRWPSILSFANNHFRPVVQPYTPRWTEFSRLPDTIKEWAEQNIYFVSSDCLHYEICENCRGAILQDRQMTLEEYFHLDRLSGDLACSEDTNVLNLSRSQTTDQSDQEVSTYADPPEQERPSGQDL

References More References in PubMed

1

Functional Analysis of V2 Protein of Beet Curly Top Iran Virus.

Bahari A, et al.  Plants (Basel). 2022 Dec 2;11(23):3351. doi: 10.3390/plants11233351.

PMID: 36501393

2

Genome-based identification of beet curly top Iran virus infecting sugar beet in Turkey and investigation of its pathogenicity by agroinfection.

Yıldırım K, et al.  J Virol Methods. 2022 Feb;300:114380. doi: 10.1016/j.jviromet.2021.114380. Epub 2021 Nov 24.

PMID: 34838538

3

Beet Curly Top Iran Virus Rep and V2 Suppress Post-Transcriptional Gene Silencing via Distinct Modes of Action.

Ebrahimi S, et al.  Viruses. 2023 Sep 26;15(10):1996. doi: 10.3390/v15101996.

PMID: 37896771

4

Development of Highly Efficient Resistance to Beet Curly Top Iran Virus (Becurtovirus) in Sugar Beet (B. vulgaris) via CRISPR/Cas9 System.

Yıldırım K, et al.  Int J Mol Sci. 2023 Mar 30;24(7):6515. doi: 10.3390/ijms24076515.

PMID: 37047489

5

Beet curly top virus Strains Associated with Sugar Beet in Idaho, Oregon, and a Western U.S. Collection.

Strausbaugh CA, et al.  Plant Dis. 2017 Aug;101(8):1373-1382. doi: 10.1094/PDIS-03-17-0381-RE. Epub 2017 May 25.

PMID: 30678603

6

Beet curly top virus affects vector biology: the first transcriptome analysis of the beet leafhopper.

Han J, et al.  J Gen Virol. 2024 Jul;105(7):002012. doi: 10.1099/jgv.0.002012.

PMID: 39073409

7

Pest categorisation of Beet curly top virus (non-EU isolates).

EFSA Panel on Plant Health (PLH), et al.  EFSA J. 2017 Oct 11;15(10):e04998. doi: 10.2903/j.efsa.2017.4998. eCollection 2017 Oct.

PMID: 32625295

8

Regulatory Roles of Small Non-coding RNAs in Sugar Beet Resistance Against Beet curly top virus.

Majumdar R, et al.  Front Plant Sci. 2022 Jan 10;12:780877. doi: 10.3389/fpls.2021.780877. eCollection 2021.

PMID: 35082811

9

Splicing features in the expression of the complementary-sense genes of Beet curly top Iran virus.

Bozorgi N, et al.  Virus Genes. 2017 Apr;53(2):323-327. doi: 10.1007/s11262-016-1422-y. Epub 2016 Dec 21.

PMID: 28004232

10

Diversity of beet curly top Iran virus isolated from different hosts in Iran.

Gharouni Kardani S, et al.  Virus Genes. 2013 Jun;46(3):571-5. doi: 10.1007/s11262-013-0875-5. Epub 2013 Jan 18.

PMID: 23329008