Beet curly top Iran virus


Basic Information

Genus Becurtovirus
NCBI Assembly GCF_000879795.1
Isolate Iran: Kerman
Release date 2015/2/22
Submitter Yazdi,H.R., Heydarnejad,J., Massumi,H., Bolok Yazdi,H.R., Hosseini Abhari,E.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_010417
CCCCGCGTTTACCTTTCCACGTGGCGTATGCTGAGTGGGCGGACGGTTGAGTGGGGAACACGCTTTACTTTAAATTAAAGTAAAGTAGCACTAAGTGGGACCCACTTTTTTTATTTCTTTAAAGACTTTCTTTTTAAGTCTTCTAGATGCGTATATTATACGTATAAATGATGGTCTGTATTCCCGACTGGTTATTTCTACTTTTCGTATTTAGTACGATTCTTCAGTCGGGAATTAATTTCTATGGTACCTTTCAGAGTGAGCGAATTTCCGCGAAGCTATCCAGCCTTGCTAGCCGTTTCGACGAGCTGTTTCTTGCGTTACAACAAGTGGTGTTTGCTCGGAATCGAGTCTCAAGTTCGCGAGCCGTTGACTCTAGAGGAAGGCGAGGACTTTCTTCAATTCCAGAAGGAAGTGAAGAAATTGCTGAAGCTTAAGGTTAGTTTTAAGCGTAAGTGTTGTTTGTACGAGGACATATACAAGAAGTATGGCGGTTCAGAGTCAAAAGAGAAAGTATACTCCTCCGGCCAGTTGGACGAGGAAGAGGAAGACGACCGGTGGGAGGACAGTTTGGAAGAAATACCAATGGAAGAGACCGGTGCGAAGTAACCGGGCTGTGAAGTTGAAGATGTATGACGACATGTTAGGTGCATCTGGAGTTGGATCTACCATCAGTAATGATGGGATGATCACTATGTTGAACAACTATGTTCAAGGAATTGGTGATAGCCAGAGGTCAAACAACTTGACCGTTACGAGGCATTTGAAGTTTGATATGTCTCTTATGGCTAGTGGTGCATTTTGGGCGAGTCCTAACTATATGACTCAATATCATTGGGTTATTGTGGATCGTGATGTTGGTTCTACGTTTCCGACTCAGTTGAGTACTATCTTTGATATTCCGACTGGTGGTCAGGCTATGCCTTCCACCTATCGGATTAGGAGGGATGCGAATGAACGATTTATCGTGAAGAAGAAGTGGCAGACTCATCTGATGTCTACTGGTACTGATTATGGAGGAAAGCAGACCTATAAGGCGCCTTCAATGCCTAATTATAAGAAGGCTATGAACATTAATATTCGGAATATCAATGTCAAGACATTGTGGAAGGACACTGGAGGTGGCAAATATGAAGATGTGAAGGAGAATGCTATTCTTTACGTAGTGGTTAATGATAATACTGATAATACAAATATGTATGCTACTTTGTTTGGTAATTGTAGGGCTTATTTCTATTGATTATTAGAAATGCCCAATGATGTTGAAGTTGAATAAAAAATTTATTATTAAATTTGTTTGTGTAAGATTGAAATGTAGATATGTAAATATCTAGTATAATTGCCTTGGAAAACAAAAAACGAAAAAATGATTGCCGGAAAACGAAAAAAAAACCCCTCAGAAATTAGACCCCCGGAAAATCAATATATTTATATTAATCTGCAGCCCATCCACGAAGTGGATGTTACATATTTCGAAGAAATATCTTAACTATACCAAACTTCATCACTTGCTAAGTAATATACATCGCAATTAGCGTAAAACCAATCTTTCATAGATTCACTCATACAAGGTATCCAGTCCATATCTGGATTAGTAATAGCAATACAAGGTCTTCCGCCTTGAATGACTAAGTTTGGTTTATGTTTTATCCAAACACTATAATCTTCGTTACATCCGATAATAGATTTAAACAACTCCTGTTGTATTTTTTGATAGCGGATATCGTCTATTATATGGTATGTAGTGTGGTCTATATCGTATAGAGACCAATCTAATACCATGCCAGACATATAGTGGTGTCGGCCTAGAGATCTTGCCCACTGGGTCTTTCCTGTTCTGGAGGGTCCGCATATGTAGAGACTTCTTGGTCGGACTGGTCTGTTGTCTGGCTCCTGGACAAATTAAGTACGTTAGTGTCTTCACTACATGCTAGATCGCCACTAAGTCGATCTAGGTGGAAGTATTCTTCAAGAGTCATTTGTCTGTCTTGAAGAATTGCTCCCCTGCAATTCTCACATATTTCGTAATGTAAACAATCTGAACTTACGAAATATATATTTTGTTCCGCCCACTCTTTGATTGTGTCAGGTAGCCTAGAGAACTCCGTCCATCTGGGTGTGTAAGGTTGCACAACTGGCCTGAAATGATTGTTGGCGAAGGATAGAATGGAAGGCCATCTGAGAACGAAATCTGTTGGGCAGGACTCTCGTATGTTACTGAAGAACTCCTCCTTGGTGTTGGATGAATCAAGAATTCGTCTCCATTCCACGTTGCTGTTGCCAATACTGTTTGGAGAGCGCCCTCCCAGTCGAAGCTCTCCAAATGTTCTAGGGCTCGTGTCCTCCTTGGTGATATACTCGAATGCTCGCTTTGGGGCGTTGAGTCCGTCGATTCTTGGGTGAATCGTTCGACCGTCTGGGAGTATGATGTTGAAAAACAGGTTCCCATTGACGTCGAGTTTCTTGTCACACTGGATAATACAGTGTGTGTGGAATCCTCCTTCAGGTTGTTCTTCAGTAGGCTGATGATGTTCTAGTGATACTGCAAGGGATAGAATCACATATGATTCTAATAAGGTCTTCAGTTTCTCGAATATATAATCTTTAAAATCCCCACCTATTTGGGAATATGTGAGAAAAGCATTTTTCTTTTGAAAACGTAAATAACCGGGTTGGTTAGGGGTAGGTCTGTTTCTGTTTGGAGCACGTGGCATGTTTGTTTTTGTTTCCCTCTTCCGTACAATGAATGAAAAGAAATTGTATATATGAGAGGAAGAGGAACTTAAGAGGAATGAGGAACTGAAGAGGGAGGTAGAGGGATAAATAGGTAAACGCGGATAAGATT

Gene Information

NCBI Accession YP_001715617.1
Location 168-437
Gene Name V3
Protein Name movement protein
Coding Region ATGATGGTCTGTATTCCCGACTGGTTATTTCTACTTTTCGTATTTAGTACGATTCTTCAGTCGGGAATTAATTTCTATGGTACCTTTCAGAGTGAGCGAATTTCCGCGAAGCTATCCAGCCTTGCTAGCCGTTTCGACGAGCTGTTTCTTGCGTTACAACAAGTGGTGTTTGCTCGGAATCGAGTCTCAAGTTCGCGAGCCGTTGACTCTAGAGGAAGGCGAGGACTTTCTTCAATTCCAGAAGGAAGTGAAGAAATTGCTGAAGCTTAA
Protein Sequence MMVCIPDWLFLLFVFSTILQSGINFYGTFQSERISAKLSSLASRFDELFLALQQVVFARNRVSSSRAVDSRGRRGLSSIPEGSEEIAEA

NCBI Accession YP_001715618.1
Location 244-609
Gene Name V2
Protein Name ss-ds DNA regulator
Coding Region ATGGTACCTTTCAGAGTGAGCGAATTTCCGCGAAGCTATCCAGCCTTGCTAGCCGTTTCGACGAGCTGTTTCTTGCGTTACAACAAGTGGTGTTTGCTCGGAATCGAGTCTCAAGTTCGCGAGCCGTTGACTCTAGAGGAAGGCGAGGACTTTCTTCAATTCCAGAAGGAAGTGAAGAAATTGCTGAAGCTTAAGGTTAGTTTTAAGCGTAAGTGTTGTTTGTACGAGGACATATACAAGAAGTATGGCGGTTCAGAGTCAAAAGAGAAAGTATACTCCTCCGGCCAGTTGGACGAGGAAGAGGAAGACGACCGGTGGGAGGACAGTTTGGAAGAAATACCAATGGAAGAGACCGGTGCGAAGTAA
Protein Sequence MVPFRVSEFPRSYPALLAVSTSCFLRYNKWCLLGIESQVREPLTLEEGEDFLQFQKEVKKLLKLKVSFKRKCCLYEDIYKKYGGSESKEKVYSSGQLDEEEEDDRWEDSLEEIPMEETGAK

NCBI Accession YP_001715619.1
Location 488-1240
Gene Name V1
Protein Name coat protein
Coding Region ATGGCGGTTCAGAGTCAAAAGAGAAAGTATACTCCTCCGGCCAGTTGGACGAGGAAGAGGAAGACGACCGGTGGGAGGACAGTTTGGAAGAAATACCAATGGAAGAGACCGGTGCGAAGTAACCGGGCTGTGAAGTTGAAGATGTATGACGACATGTTAGGTGCATCTGGAGTTGGATCTACCATCAGTAATGATGGGATGATCACTATGTTGAACAACTATGTTCAAGGAATTGGTGATAGCCAGAGGTCAAACAACTTGACCGTTACGAGGCATTTGAAGTTTGATATGTCTCTTATGGCTAGTGGTGCATTTTGGGCGAGTCCTAACTATATGACTCAATATCATTGGGTTATTGTGGATCGTGATGTTGGTTCTACGTTTCCGACTCAGTTGAGTACTATCTTTGATATTCCGACTGGTGGTCAGGCTATGCCTTCCACCTATCGGATTAGGAGGGATGCGAATGAACGATTTATCGTGAAGAAGAAGTGGCAGACTCATCTGATGTCTACTGGTACTGATTATGGAGGAAAGCAGACCTATAAGGCGCCTTCAATGCCTAATTATAAGAAGGCTATGAACATTAATATTCGGAATATCAATGTCAAGACATTGTGGAAGGACACTGGAGGTGGCAAATATGAAGATGTGAAGGAGAATGCTATTCTTTACGTAGTGGTTAATGATAATACTGATAATACAAATATGTATGCTACTTTGTTTGGTAATTGTAGGGCTTATTTCTATTGA
Protein Sequence MAVQSQKRKYTPPASWTRKRKTTGGRTVWKKYQWKRPVRSNRAVKLKMYDDMLGASGVGSTISNDGMITMLNNYVQGIGDSQRSNNLTVTRHLKFDMSLMASGAFWASPNYMTQYHWVIVDRDVGSTFPTQLSTIFDIPTGGQAMPSTYRIRRDANERFIVKKKWQTHLMSTGTDYGGKQTYKAPSMPNYKKAMNINIRNINVKTLWKDTGGGKYEDVKENAILYVVVNDNTDNTNMYATLFGNCRAYFY

NCBI Accession YP_001715620.1
Location 1486-1791
Gene Name C2
Protein Name hypothetical Rep protein
Coding Region ATGTCTGGCATGGTATTAGATTGGTCTCTATACGATATAGACCACACTACATACCATATAATAGACGATATCCGCTATCAAAAAATACAACAGGAGTTGTTTAAATCTATTATCGGATGTAACGAAGATTATAGTGTTTGGATAAAACATAAACCAAACTTAGTCATTCAAGGCGGAAGACCTTGTATTGCTATTACTAATCCAGATATGGACTGGATACCTTGTATGAGTGAATCTATGAAAGATTGGTTTTACGCTAATTGCGATGTATATTACTTAGCAAGTGATGAAGTTTGGTATAGTTAA
Protein Sequence MSGMVLDWSLYDIDHTTYHIIDDIRYQKIQQELFKSIIGCNEDYSVWIKHKPNLVIQGGRPCIAITNPDMDWIPCMSESMKDWFYANCDVYYLASDEVWYS

NCBI Accession YP_001715621.1
Location 1806-2714
Gene Name C1
Protein Name hypothetical RepA protein
Coding Region ATGCCACGTGCTCCAAACAGAAACAGACCTACCCCTAACCAACCCGGTTATTTACGTTTTCAAAAGAAAAATGCTTTTCTCACATATTCCCAAATAGGTGGGGATTTTAAAGATTATATATTCGAGAAACTGAAGACCTTATTAGAATCATATGTGATTCTATCCCTTGCAGTATCACTAGAACATCATCAGCCTACTGAAGAACAACCTGAAGGAGGATTCCACACACACTGTATTATCCAGTGTGACAAGAAACTCGACGTCAATGGGAACCTGTTTTTCAACATCATACTCCCAGACGGTCGAACGATTCACCCAAGAATCGACGGACTCAACGCCCCAAAGCGAGCATTCGAGTATATCACCAAGGAGGACACGAGCCCTAGAACATTTGGAGAGCTTCGACTGGGAGGGCGCTCTCCAAACAGTATTGGCAACAGCAACGTGGAATGGAGACGAATTCTTGATTCATCCAACACCAAGGAGGAGTTCTTCAGTAACATACGAGAGTCCTGCCCAACAGATTTCGTTCTCAGATGGCCTTCCATTCTATCCTTCGCCAACAATCATTTCAGGCCAGTTGTGCAACCTTACACACCCAGATGGACGGAGTTCTCTAGGCTACCTGACACAATCAAAGAGTGGGCGGAACAAAATATATATTTCGTAAGTTCAGATTGTTTACATTACGAAATATGTGAGAATTGCAGGGGAGCAATTCTTCAAGACAGACAAATGACTCTTGAAGAATACTTCCACCTAGATCGACTTAGTGGCGATCTAGCATGTAGTGAAGACACTAACGTACTTAATTTGTCCAGGAGCCAGACAACAGACCAGTCCGACCAAGAAGTCTCTACATATGCGGACCCTCCAGAACAGGAAAGACCCAGTGGGCAAGATCTCTAG
Protein Sequence MPRAPNRNRPTPNQPGYLRFQKKNAFLTYSQIGGDFKDYIFEKLKTLLESYVILSLAVSLEHHQPTEEQPEGGFHTHCIIQCDKKLDVNGNLFFNIILPDGRTIHPRIDGLNAPKRAFEYITKEDTSPRTFGELRLGGRSPNSIGNSNVEWRRILDSSNTKEEFFSNIRESCPTDFVLRWPSILSFANNHFRPVVQPYTPRWTEFSRLPDTIKEWAEQNIYFVSSDCLHYEICENCRGAILQDRQMTLEEYFHLDRLSGDLACSEDTNVLNLSRSQTTDQSDQEVSTYADPPEQERPSGQDL

References More References in PubMed

1

Functional Analysis of V2 Protein of Beet Curly Top Iran Virus.

Bahari A, et al.  Plants (Basel). 2022 Dec 2;11(23):3351. doi: 10.3390/plants11233351.

PMID: 36501393

2

Genome-based identification of beet curly top Iran virus infecting sugar beet in Turkey and investigation of its pathogenicity by agroinfection.

Yıldırım K, et al.  J Virol Methods. 2022 Feb;300:114380. doi: 10.1016/j.jviromet.2021.114380. Epub 2021 Nov 24.

PMID: 34838538

3

Beet Curly Top Iran Virus Rep and V2 Suppress Post-Transcriptional Gene Silencing via Distinct Modes of Action.

Ebrahimi S, et al.  Viruses. 2023 Sep 26;15(10):1996. doi: 10.3390/v15101996.

PMID: 37896771

4

Diversity of beet curly top Iran virus isolated from different hosts in Iran.

Gharouni Kardani S, et al.  Virus Genes. 2013 Jun;46(3):571-5. doi: 10.1007/s11262-013-0875-5. Epub 2013 Jan 18.

PMID: 23329008

5

Development of Highly Efficient Resistance to Beet Curly Top Iran Virus (Becurtovirus) in Sugar Beet (B. vulgaris) via CRISPR/Cas9 System.

Yıldırım K, et al.  Int J Mol Sci. 2023 Mar 30;24(7):6515. doi: 10.3390/ijms24076515.

PMID: 37047489

6

Targeted mutagenesis in plants using Beet curly top virus for efficient delivery of CRISPR/Cas12a components.

Eini O, et al.  N Biotechnol. 2022 Mar 25;67:1-11. doi: 10.1016/j.nbt.2021.12.002. Epub 2021 Dec 8.

PMID: 34896246

7

Seed Transmission of Beet Curly Top Virus and Beet Curly Top Iran Virus in a Local Cultivar of Petunia in Iran.

Anabestani A, et al.  Viruses. 2017 Oct 16;9(10):299. doi: 10.3390/v9100299.

PMID: 29035342

8

Splicing features in the expression of the complementary-sense genes of Beet curly top Iran virus.

Bozorgi N, et al.  Virus Genes. 2017 Apr;53(2):323-327. doi: 10.1007/s11262-016-1422-y. Epub 2016 Dec 21.

PMID: 28004232

9

Turnip curly top virus, a highly divergent geminivirus infecting turnip in Iran.

Briddon RW, et al.  Virus Res. 2010 Sep;152(1-2):169-75. doi: 10.1016/j.virusres.2010.05.016. Epub 2010 Jun 8.

PMID: 20566344

10

The Rep and C1 of Beet curly top Iran virus represent pathogenicity factors and induce hypersensitive response in Nicotiana benthamiana plants.

Ebrahimi S, et al.  Virus Genes. 2022 Dec;58(6):550-559. doi: 10.1007/s11262-022-01927-3. Epub 2022 Aug 12.

PMID: 35960462