Pea leaf distortion virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_001974515.1 |
| Isolate |
Nepal |
| Release date |
2017/1/29 |
| Submitter |
Shahid,M.S., Pudashini,B.J., Khatri-Chhetri,G.B., Briddon,R.W., Natsuaki,K.T. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTTTGGTGGTCCCTCGACCAATCAGATGACGCGCTCAAAGCTTAAATAACGCTCCCGCCCACTATAAGTACTTCGGCCCTAAGTTTCTGTTTGAAAAATGTGGGATCCACTGCTAAACGAGTTCCCCGAGACGGTTCACGGGTTTCGTTGCATGCTTGCTATCAAATATCTTCAACATCTGTCTGAAGAATACTCTCCTGATACGGTAGGTTACGATTTAATCCGCGATTTAATATCAATTTTGCGTTCTAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCATCGTCTCAACTTCGACAGCCCATACGCGTGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAGGGTCCATGTAAGGTCCAGTCATTTGAGTCCAGACACGATGTAGTCCATATAGGGAAGGTCATGTGTATTAGTGATGTTACTCGCGGTACTGGGTTGACCCATAGAGTTGGTAAACGTTTCTGTGTTAAGTCAGTTTATGTGTTGGGTAAGATCTGGATGGATGAAAATATAAAGTCCAAGAATCATACGAACAATGTGATGTTCTTTCTCGTTCGTGATCGACGTCCGGTTGACAAGCCTCAGGATTTTGGAGAGGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATGTGCATCGCGATCGTTACCAGGTCTTGAGGAAATGGTATGCAACTGTCACTGGTGGACAGTATGGTGCAAAGGAACAGGCTTTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTACAATCAGCAAGAGGCAGGGAAATACGAGAATCATTCTGAGAATGCCTTGATGTTGTATATGGCATGTACCCATGCCTCTAATCCTGTTTACGCCACTCTTAAGATTAGGATCTACTTCTACGATTCTGTAACGAATTGATATTAATAAAGATCGAATTTTATTTCTGAAGTCATGTTTACATACATAGTTTGTTCTATTTTTTTCCATAATACATGATCAACTGCTCTAATAATTGAATTAATTGAGATTACACCCAGATTTGTGAGATACTTGAGGACTTGGGTTTTGAATACTTTTAAGAAAAGACCAGTCTGAGGGTGTAAGGTCGTCCAGATTCGGTAGGTCAGAAAACACTTGTGCACTCCCAGAGCTCTCCGAAGGTTGTAGTTGAATTGGATCCTGATCTTGATGATGTCCATGTTCATCGTGAATGGACGGTTGTCGTGGCTGAGGATCTTGAAATAGAGGGGATTTGGAACTTCCCAGATATAGGCGCCACTCCATGCTTGAGCTGCAGTGATGGGTCCCCCTGTGCGTAAATCCATGGTTGAAGCAGTTTAGAGATAGAAAATAAGAACACCCGCATTCAAGATCGACTCTCCTCCTCCTGTTGCGCTTCTTCGCTTCCCTGTGCTGTACTTTGATTGGAACCTGAGTATAGTGGTCCTTCGAGGGTGATGAAGATCGCATTCTTGAGAGCCCAATTCTTTAATGCGCTGTTCTTTTCCTCGTCGAGGAATTCTTTATAACTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCGTATTTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTAGACCTTGGGACTTAAGTCTAAGTGTCCACATAGATAGTTATGTGGGCCTAGTGACCTAGCCCACATTGTCTTGCCGGTTCGACTGTCTCCCTCAATTACTATACTTTGAGGTCTCAGGGGCCGCGCAGCGGCGTCGACGACGTTCTCCGACACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAGGAAAAGGGAGAAACGTAGGGAGCCGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCCTAATGACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCCGCGGCGTAAGCGTCGTTTGCTGTCTGTTGTCCTCCTCTTGCAGATCGTCCGTCGATCTGAAACTCCCCCCATTCGAGAGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTATTTGGGGATACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATGAGCACGTGCAGATGAGGTTCCCCATTTTCATGGAGTTCTCGGCAGATTTTAATATATTTTTGGGAAGTTGGGGTTTGAAGATTCTGGATTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAACACTTGGGATAAGTGAGGAAATAGTTTTTAGAATAAATAACAAACCGCTTTGGAGCCATGTTGACTAAAATTGATCACCGATTGACCGCTCTTGCAACTCTCTCCTGTATTTCGGTGATCAATATATAGTGATCACCAAATGGCATTACTCGTAATTTTGCAAAGAAATTCAAAATCTACACGCTCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009344819.1
|
|
Location
|
119-466 |
|
Gene Name
|
V2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCACTGCTAAACGAGTTCCCCGAGACGGTTCACGGGTTTCGTTGCATGCTTGCTATCAAATATCTTCAACATCTGTCTGAAGAATACTCTCCTGATACGGTAGGTTACGATTTAATCCGCGATTTAATATCAATTTTGCGTTCTAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCATCGTCTCAACTTCGACAGCCCATACGCGTGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQHLSEEYSPDTVGYDLIRDLISILRSRNYVEASCRYRHFYPRVEGASSSQLRQPIRVPCCCPHCPRHKISHVGEQAHESQAQNVQDVQKP |
|
NCBI Accession
|
YP_009344820.1
|
|
Location
|
279-1049 |
|
Gene Name
|
CP |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCATCGTCTCAACTTCGACAGCCCATACGCGTGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAATCTCGCATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAGGGTCCATGTAAGGTCCAGTCATTTGAGTCCAGACACGATGTAGTCCATATAGGGAAGGTCATGTGTATTAGTGATGTTACTCGCGGTACTGGGTTGACCCATAGAGTTGGTAAACGTTTCTGTGTTAAGTCAGTTTATGTGTTGGGTAAGATCTGGATGGATGAAAATATAAAGTCCAAGAATCATACGAACAATGTGATGTTCTTTCTCGTTCGTGATCGACGTCCGGTTGACAAGCCTCAGGATTTTGGAGAGGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATGTGCATCGCGATCGTTACCAGGTCTTGAGGAAATGGTATGCAACTGTCACTGGTGGACAGTATGGTGCAAAGGAACAGGCTTTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTACAATCAGCAAGAGGCAGGGAAATACGAGAATCATTCTGAGAATGCCTTGATGTTGTATATGGCATGTACCCATGCCTCTAATCCTGTTTACGCCACTCTTAAGATTAGGATCTACTTCTACGATTCTGTAACGAATTGA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRHRLNFDSPYACRAAAPIVRVTKSRMWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKSKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYGAKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_009344821.1
|
|
Location
|
1052-1456 |
|
Gene Name
|
REn |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTTACGCACAGGGGGACCCATCACTGCAGCTCAAGCATGGAGTGGCGCCTATATCTGGGAAGTTCCAAATCCCCTCTATTTCAAGATCCTCAGCCACGACAACCGTCCATTCACGATGAACATGGACATCATCAAGATCAGGATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTACCGAATCTGGACGACCTTACACCCTCAGACTGGTCTTTTCTTAAAAGTATTCAAAACCCAAGTCCTCAAGTATCTCACAAATCTGGGTGTAATCTCAATTAATTCAATTATTAGAGCAGTTGATCATGTATTATGGAAAAAAATAGAACAAACTATGTATGTAAACATGACTTCAGAAATAAAATTCGATCTTTATTAA |
|
Protein Sequence
|
MDLRTGGPITAAQAWSGAYIWEVPNPLYFKILSHDNRPFTMNMDIIKIRIQFNYNLRRALGVHKCFLTYRIWTTLHPQTGLFLKVFKTQVLKYLTNLGVISINSIIRAVDHVLWKKIEQTMYVNMTSEIKFDLY |
|
NCBI Accession
|
YP_009344822.1
|
|
Location
|
1149-1601 |
|
Gene Name
|
TrAP |
|
Protein Name
|
transcription associated protein |
|
Coding Region
|
ATGCGATCTTCATCACCCTCGAAGGACCACTATACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAAGCGCAACAGGAGGAGGAGAGTCGATCTTGAATGCGGGTGTTCTTATTTTCTATCTCTAAACTGCTTCAACCATGGATTTACGCACAGGGGGACCCATCACTGCAGCTCAAGCATGGAGTGGCGCCTATATCTGGGAAGTTCCAAATCCCCTCTATTTCAAGATCCTCAGCCACGACAACCGTCCATTCACGATGAACATGGACATCATCAAGATCAGGATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTACCGAATCTGGACGACCTTACACCCTCAGACTGGTCTTTTCTTAAAAGTATTCAAAACCCAAGTCCTCAAGTATCTCACAAATCTGGGTGTAATCTCAATTAA |
|
Protein Sequence
|
MRSSSPSKDHYTQVPIKVQHREAKKRNRRRRVDLECGCSYFLSLNCFNHGFTHRGTHHCSSSMEWRLYLGSSKSPLFQDPQPRQPSIHDEHGHHQDQDPIQLQPSESSGSAQVFSDLPNLDDLTPSDWSFLKSIQNPSPQVSHKSGCNLN |
|
NCBI Accession
|
YP_009344823.1
|
|
Location
|
1498-2586 |
|
Gene Name
|
Rep |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGGCTCCAAAGCGGTTTGTTATTTATTCTAAAAACTATTTCCTCACTTATCCCAAGTGTTCTCTCACTAAAGAAGAAGCACTTTCCCAAATCCAGAATCTTCAAACCCCAACTTCCCAAAAATATATTAAAATCTGCCGAGAACTCCATGAAAATGGGGAACCTCATCTGCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTATCCCCAAATAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACTCTCGAATGGGGGGAGTTTCAGATCGACGGACGATCTGCAAGAGGAGGACAACAGACAGCAAACGACGCTTACGCCGCGGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAGGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCGGCTCCCTACGTTTCTCCCTTTTCCTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGTGTCGGAGAACGTCGTCGACGCCGCTGCGCGGCCCCTGAGACCTCAAAGTATAGTAATTGAGGGAGACAGTCGAACCGGCAAGACAATGTGGGCTAGGTCACTAGGCCCACATAACTATCTATGTGGACACTTAGACTTAAGTCCCAAGGTCTACAGTAACGACGCCTGGTACAACGTCATTGATGACGTCGACCCGCATTTCCTCAAACACTTTAAGGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACTAAATACGGGAAACCAGTTCAAATTAAAGGCGGGATACCGACAATCTTCCTCTGCAATCCTGGTCCCAACAGCAGTTATAAAGAATTCCTCGACGAGGAAAAGAACAGCGCATTAAAGAATTGGGCTCTCAAGAATGCGATCTTCATCACCCTCGAAGGACCACTATACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAAGCGCAACAGGAGGAGGAGAGTCGATCTTGA |
|
Protein Sequence
|
MAPKRFVIYSKNYFLTYPKCSLTKEEALSQIQNLQTPTSQKYIKICRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWVSENVVDAAARPLRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLEGPLYSGSNQSTAQGSEEAQQEEESRS |
|
NCBI Accession
|
YP_009344824.1
|
|
Location
|
2130-2438 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGAAAATGGGGAACCTCATCTGCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTATCCCCAAATAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACTCTCGAATGGGGGGAGTTTCAGATCGACGGACGATCTGCAAGAGGAGGACAACAGACAGCAAACGACGCTTACGCCGCGGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAGGGAACTAG |
|
Protein Sequence
|
MKMGNLICTCSSSSRGNTSARISDSSTWYPQIGQHISIQTYRELNPAPTSSPTSTRTETLSNGGSFRSTDDLQEEDNRQQTTLTPRHLTQAVSQRLLESLGN |