Passionfruit leaf curl virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTAAAGTGGTCCCCAGAGCACGTGGTCCAATAATAGACGCTCCTCAAAGCTTAATTAATGGTTTGTGGGCCTATAGACTTGCCCACCAAGTAGTGGGATTTTGTCATCATGTGGGATCCTCTTTTAAACGAGTTTCCAGACACAGTGCACGGTTTTCGGTGTATGCTTGCTGTGAAATACTTGCAGCTCGTAGAAAAAACGTATTCACCGGATTCATTGGGTTACGATTTAATTCGCGATTTGATATCTGTAGTTCGTGCTCGTAACTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGTCGCCGTCTGAACTTCGAGAGCCCGTACACGGGTCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAGTCAAGAGCATGGGCCAACAGGCCCATGAATCGGAAACCCAGAATGTACAGAATGTACAGAAGTCCTGATGTTCCCAGAGGATGCGAAGGCCCATGTAAGGTTCAGTCGTTCGAGTCTAGACATGACATATCTCACATTGGGAAGGTTATGTGTATTAGTGATGTCACCCGTGGAATTGGGCTTACTCATAGGGTCGGTAAGAGGTTTTGTGTTAAGTCCGTATATGTATTGGGTAAGGTGTGGATGGATGAGAATATCAAGACTAAGAATCACACGAATAGTGTGATGTTTTTTTTGTGTCGTGACAGGAGGCCTGTTGACAAACCCCAGGATTTTGGTGAGGTGTTTAATATGTTTGATAATGAGCCTAGCACTGCAACCGTGAAGAATGTTCATCGTGATCGCTACCAAGTATTGAGGAAGTGGCACGCAACTGTCACTGGTGGAACCTATGCGTCCAAGGAGCAGGCTTTGGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGGAAGTATGAGAATCATAGTGAGAATGCTCTGATGTTGTATATGGCGTCTACGCACGCCTCTAATCCCGTGTATGCTACATTGAAGATACGGATCTATTTTTATGATTCTGTATCTAATTAATAAATATTGAATTTTATTGAATGTGATTGTTCAACGTACAACATGTGATGCAATACATCCCATAAAACATGATCTACTGCTCTAATTACATTGTTTAAACTAATAACACCTAAATTATCTAAATATTTAATTACTTGGGTCTTAAAAACCCTTAAGAAACGACCAGTCTGAGGTTGTGAAGTCATCCAGATTCGGAAGACTAGAAAACACTTGTGAATCCCCAATGCCTTCCTCAGGTTGTGATTGAATTGGATCTGCATTGTGACTATGTCGTGGTTCGTTAGGAATGGTCGGTTGTGGTGCTCCGTTATCTTGAAATAAAGGGGATTTTGTATCTCCCAGATATACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTTTGGCAGGCTAATGCTATGAAGTATGAACACCCACAAGGGAGATCAACACGTCGACGCCTCGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTTTTGAGTGCATTATTCTTCTCTTCATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGATCAACGTCATCGATGACGTTATACCACGCATCATTGCTGTAAACTTTGGGGCTTAGATCTAAATGACCGCATAGGTAATTATGAGGCCCTAATGACCTAGCCCACATCGTTTTACCCGTACGACTGTCTCCCTCAATTACTATACTTTGAGGCCTCAGAGGCCGCGCAGCGGCAGCCATGACATTTTCTGAGACCCATTCTTCAAGTTCTTCAGGAACTTGATCAAAAGAAGAAGATAAAAAAGGTGAAACATAAACCTCCAACGGAGGAGTAAAAATCCTATCTAAATTAGCATTTAAATTATGATATTGAAAAATAAATTTTTCTGGGAGTTTCTCCTTTATTATAGCCATTGCAGCCTTTTTAGAACCTGCATTTAGGGCTTCTGCAGCAGCATCATTAGCTGTCTGTTGACCTCCTCGTGCAGATCTTCCATCGATCTGGAATTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGTGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCTGGTTGGGGATACCAGGTCGAAGAATCTGTTGTTTTGGCACTTGTATTTTCCTTCGAATTGTATGAGAACATGCAGGTGAGGAGTCCCATCTTCGTGGAGCTCTCTGCAGATTCTAATGAATTTTTTGTTCGTAGGGGTTTCTAAGTTTAAGAATTGGGAAAGTGCTTCTTCCTTTGTAAGGGAGCACTTTGGATAAGTAAGGAAATAATTTTTGGCATTTATTTGAAAACGTTTTGGTTGAGGCATGTTGACTTGGTCAATCGGTACTCAACAAACTTGGCTATGCAATTGGGGAATGGTACTCAATATATAGGTGAGTACCAAATGGCATGATTGTAATTTGGTAAAGTGTCATTTGAATTGCAAAACCCTCACGCTCCAAAAGCGGCCATCCGTATAATATT
Gene Information
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NCBI Accession
|
QCE30487.1
|
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Location
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130-477 |
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Gene Name
|
AV2 |
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Protein Name
|
pre-coat protein |
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Coding Region
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ATGTGGGATCCTCTTTTAAACGAGTTTCCAGACACAGTGCACGGTTTTCGGTGTATGCTTGCTGTGAAATACTTGCAGCTCGTAGAAAAAACGTATTCACCGGATTCATTGGGTTACGATTTAATTCGCGATTTGATATCTGTAGTTCGTGCTCGTAACTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGTCGCCGTCTGAACTTCGAGAGCCCGTACACGGGTCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAGTCAAGAGCATGGGCCAACAGGCCCATGAATCGGAAACCCAGAATGTACAGAATGTACAGAAGTCCTGA |
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Protein Sequence
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MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDSLGYDLIRDLISVVRARNYVEATSRYNHFHSRIEGASPSELREPVHGSCCCPHCPRHKVKSMGQQAHESETQNVQNVQKS |
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NCBI Accession
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QCE30488.1
|
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Location
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290-1060 |
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Gene Name
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AV1 |
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Protein Name
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coat protein |
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Coding Region
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ATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGTCGCCGTCTGAACTTCGAGAGCCCGTACACGGGTCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAGTCAAGAGCATGGGCCAACAGGCCCATGAATCGGAAACCCAGAATGTACAGAATGTACAGAAGTCCTGATGTTCCCAGAGGATGCGAAGGCCCATGTAAGGTTCAGTCGTTCGAGTCTAGACATGACATATCTCACATTGGGAAGGTTATGTGTATTAGTGATGTCACCCGTGGAATTGGGCTTACTCATAGGGTCGGTAAGAGGTTTTGTGTTAAGTCCGTATATGTATTGGGTAAGGTGTGGATGGATGAGAATATCAAGACTAAGAATCACACGAATAGTGTGATGTTTTTTTTGTGTCGTGACAGGAGGCCTGTTGACAAACCCCAGGATTTTGGTGAGGTGTTTAATATGTTTGATAATGAGCCTAGCACTGCAACCGTGAAGAATGTTCATCGTGATCGCTACCAAGTATTGAGGAAGTGGCACGCAACTGTCACTGGTGGAACCTATGCGTCCAAGGAGCAGGCTTTGGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGGAAGTATGAGAATCATAGTGAGAATGCTCTGATGTTGTATATGGCGTCTACGCACGCCTCTAATCCCGTGTATGCTACATTGAAGATACGGATCTATTTTTATGATTCTGTATCTAATTAA |
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Protein Sequence
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MSKRPADIIISTPASKVRRRLNFESPYTGRVAVPTVRVTKSRAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDISHIGKVMCISDVTRGIGLTHRVGKRFCVKSVYVLGKVWMDENIKTKNHTNSVMFFLCRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGTYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMASTHASNPVYATLKIRIYFYDSVSN |
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NCBI Accession
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QCE30489.1
|
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Location
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1057-1461 |
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Gene Name
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AC3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATAACGGAGCACCACAACCGACCATTCCTAACGAACCACGACATAGTCACAATGCAGATCCAATTCAATCACAACCTGAGGAAGGCATTGGGGATTCACAAGTGTTTTCTAGTCTTCCGAATCTGGATGACTTCACAACCTCAGACTGGTCGTTTCTTAAGGGTTTTTAAGACCCAAGTAATTAAATATTTAGATAATTTAGGTGTTATTAGTTTAAACAATGTAATTAGAGCAGTAGATCATGTTTTATGGGATGTATTGCATCACATGTTGTACGTTGAACAATCACATTCAATAAAATTCAATATTTATTAA |
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Protein Sequence
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MDSRTGELITAAQAENGVYIWEIQNPLYFKITEHHNRPFLTNHDIVTMQIQFNHNLRKALGIHKCFLVFRIWMTSQPQTGRFLRVFKTQVIKYLDNLGVISLNNVIRAVDHVLWDVLHHMLYVEQSHSIKFNIY |
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NCBI Accession
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QCE30490.1
|
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Location
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1202-1606 |
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Gene Name
|
AC2 |
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Protein Name
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transcription activator protein |
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Coding Region
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ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACGAGGCGTCGACGTGTTGATCTCCCTTGTGGGTGTTCATACTTCATAGCATTAGCCTGCCAAAACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATAACGGAGCACCACAACCGACCATTCCTAACGAACCACGACATAGTCACAATGCAGATCCAATTCAATCACAACCTGAGGAAGGCATTGGGGATTCACAAGTGTTTTCTAGTCTTCCGAATCTGGATGACTTCACAACCTCAGACTGGTCGTTTCTTAAGGGTTTTTAA |
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Protein Sequence
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MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACQNHGFTHRGTHHCSSSREWRVYLGDTKSPLFQDNGAPQPTIPNEPRHSHNADPIQSQPEEGIGDSQVFSSLPNLDDFTTSDWSFLKGF |
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NCBI Accession
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QCE30491.1
|
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Location
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1509-2594 |
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Gene Name
|
AC1 |
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Protein Name
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replication initiator protein |
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Coding Region
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ATGCCTCAACCAAAACGTTTTCAAATAAATGCCAAAAATTATTTCCTTACTTATCCAAAGTGCTCCCTTACAAAGGAAGAAGCACTTTCCCAATTCTTAAACTTAGAAACCCCTACGAACAAAAAATTCATTAGAATCTGCAGAGAGCTCCACGAAGATGGGACTCCTCACCTGCATGTTCTCATACAATTCGAAGGAAAATACAAGTGCCAAAACAACAGATTCTTCGACCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCACCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGAGAATTCCAGATCGATGGAAGATCTGCACGAGGAGGTCAACAGACAGCTAATGATGCTGCTGCAGAAGCCCTAAATGCAGGTTCTAAAAAGGCTGCAATGGCTATAATAAAGGAGAAACTCCCAGAAAAATTTATTTTTCAATATCATAATTTAAATGCTAATTTAGATAGGATTTTTACTCCTCCGTTGGAGGTTTATGTTTCACCTTTTTTATCTTCTTCTTTTGATCAAGTTCCTGAAGAACTTGAAGAATGGGTCTCAGAAAATGTCATGGCTGCCGCTGCGCGGCCTCTGAGGCCTCAAAGTATAGTAATTGAGGGAGACAGTCGTACGGGTAAAACGATGTGGGCTAGGTCATTAGGGCCTCATAATTACCTATGCGGTCATTTAGATCTAAGCCCCAAAGTTTACAGCAATGATGCGTGGTATAACGTCATCGATGACGTTGATCCCCACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACCAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCTAATTCAAGTTATAAAGAGTTCTTGGATGAAGAGAAGAATAATGCACTCAAAAATTGGGCTTTAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACGAGGCGTCGACGTGTTGA |
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Protein Sequence
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MPQPKRFQINAKNYFLTYPKCSLTKEEALSQFLNLETPTNKKFIRICRELHEDGTPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSTDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAAAEALNAGSKKAAMAIIKEKLPEKFIFQYHNLNANLDRIFTPPLEVYVSPFLSSSFDQVPEELEEWVSENVMAAAARPLRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNNALKNWALKNAIFVTLEGPLYSGSNQSAAQASQEGDEASTC |
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NCBI Accession
|
QCE30492.1
|
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Location
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2180-2437 |
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Gene Name
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AC4 |
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Protein Name
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AC4 |
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Coding Region
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ATGGGACTCCTCACCTGCATGTTCTCATACAATTCGAAGGAAAATACAAGTGCCAAAACAACAGATTCTTCGACCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCACCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGAGAATTCCAGATCGATGGAAGATCTGCACGAGGAGGTCAACAGACAGCTAATGATGCTGCTGCAGAAGCCCTAA |
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Protein Sequence
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MGLLTCMFSYNSKENTSAKTTDSSTWYPQPDQHISIRTFRELNPAPTSSPTSTRTETPSNGENSRSMEDLHEEVNRQLMMLLQKP |