Papaya yellow leaf curl virus
Basic Information
| Genus | Begomovirus |
|---|---|
| Isolate | India |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
MH807204
Gene Information
| NCBI Accession | QBO66572.1 |
|---|---|
| Location | 145-501 |
| Gene Name | AV2 |
| Protein Name | pre-coat |
| Coding Region | ATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACCGTTCACGGTTTAAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCTCCCGATACATTATTGCACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAG |
| Protein Sequence | MWDPLVNEFPETVHGLRCMLAVKYLQLVEKTYSPDTLLHDLIRDLISVIRARNYVEATSRYNQFHARFEGTPPSQLRQPICERYCCPNCPRHKGKGMREQANVQEAQDVQAVQKSGCS |
| NCBI Accession | QBO66573.1 |
|---|---|
| Location | 305-1075 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAGGGGCTGTGAAGGACCATGTAAGGTCCAGTCATTTGAGTTCAGACATGATATACAGCATATTGGTAAAGTTATGTGTGTTAGTGATGTTACTCGTGGTATTGGTTTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAATCCGTTTATGTTTTGGGCAAGATCTGGATGGATGAGAACATCAAGACGAAGAATCATACGAATAGTGTTATGTTGTTTCTTCTTCGTGATCGAAGGCCCGTTGACAAGCCTCAAGATTTTGGTGAGGCTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGCACGCCACTGTGACAGGCGGTCAGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCATGCCTCCAACCCTGTGAATGCTACATTTCAGATACGGATCTACTTCTATGATTCCGTAACAAATTAA |
| Protein Sequence | MSKRPADIINSTPASKVRRRLNFDSLYASGTAAPIVRVTKARACANRPMYRKPRMYRLYRSPDVPRGCEGPCKVQSFEFRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMLFLLRDRRPVDKPQDFGEAFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVNATFQIRIYFYDSVTN |
| NCBI Accession | QBO66577.1 |
|---|---|
| Location | 530-820 |
| Gene Name | AC5 |
| Protein Name | AC5 |
| Coding Region | ATGAACATTCTTCACAGTCGCCGTGCTGGGCTCATTATCAAACATGTTAAAAGCCTCACCAAAATCTTGAGGCTTGTCAACGGGCCTTCGATCACGAAGAAGAAACAACATAACACTATTCGTATGATTCTTCGTCTTGATGTTCTCATCCATCCAGATCTTGCCCAAAACATAAACGGATTTCACACAGAACCTCTTGCCAACCCTGTGGGTCAAACCAATACCACGAGTAACATCACTAACACACATAACTTTACCAATATGCTGTATATCATGTCTGAACTCAAATGA |
| Protein Sequence | MNILHSRRAGLIIKHVKSLTKILRLVNGPSITKKKQHNTIRMILRLDVLIHPDLAQNINGFHTEPLANPVGQTNTTSNITNTHNFTNMLYIMSELK |
| NCBI Accession | QBO66575.1 |
|---|---|
| Location | 1072-1476 |
| Gene Name | AC3 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAATGAATGGCGTGTATACCTGGGAAATTCAAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACCGACCAGTCCTCATGAGCAACGACATCATAACCATACAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCTTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAGGACCCAAGTTATGCAGTATTTAGATAATTTAGGAGTTGTCAGTATAAACAATGTAATTAGGGCAGTTGATCATGTATTATGGAATGTATTAGATCAAACAATTTATGTAGAACAGTCGTATTCAATAAAATTCAATATTTATTAA |
| Protein Sequence | MDSRTGEPITAAQAMNGVYTWEIQNPLYFKITEHHNRPVLMSNDIITIQVQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVMQYLDNLGVVSINNVIRAVDHVLWNVLDQTIYVEQSYSIKFNIY |
| NCBI Accession | QBO66574.1 |
|---|---|
| Location | 1217-1621 |
| Gene Name | AC2 |
| Protein Name | transcriptional activator protein |
| Coding Region | ATGCGATCTTCGTCACCCTCGAAGGACCACTCTACTCAAGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGCATCAGGCGTCGTCGCGTTGATCTGGACTGTGGCTGTTCATACTTCATCGCATTACGCTGCCACAACTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAATGAATGGCGTGTATACCTGGGAAATTCAAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACCGACCAGTCCTCATGAGCAACGACATCATAACCATACAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCTTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAG |
| Protein Sequence | MRSSSPSKDHSTQVPIKVQHRLAKKGIRRRRVDLDCGCSYFIALRCHNYGFTHRGTHHCSSGNEWRVYLGNSKSPVFQDNRAPQPTSPHEQRHHNHTSTVQSQPEESVGDSQMFHSFPNLDDLTASDWSFLKGL |
| NCBI Accession | QBO66578.1 |
|---|---|
| Location | 1524-2606 |
| Gene Name | AC1 |
| Protein Name | replication associated protein |
| Coding Region | ATGACCCCCAAGCGGTTTCAAATAAATGCCAAAAATTATTTCTTCACATATCCTAAGTGCTCACTTACTAAGGAAGAGGCACTTTCCCAAATGTTAAATACCCAAACCCAACCATCCAAAAAATTCATCAAGATCTGCAGAGAGATACACGAAGATGGGGCTCCTCATCTTCACGTGCTTATCCAATTCGAAGGAAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCAGATGTCAAGTCCTATATGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCACGGGGGGGACAACAGTCAGCCAATGATGCTTACGCCCAAGCCATTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATAAAGGATTCGCACCAAAGGATTATGTGTTACAATTTCATAATTTATATGCTAATTTACATAGGATTTTTGCACCTCCAATGGAGGTTTATGTTTTCCCCTTTTCTTCATCTTCCTTCGATCAAGTTCCAGAAGAACTTGAGGAATGGGCTGCCGAGAACGTCGTCAGTGCCGCTGCGCGGGCCTTTAAGACCCATAAGTATAGTGATTGAGGGTGACAGTCGGACAGGGAAAACAATGTGGGCTAGGTCTTTGGGACCACATAATTATCTGTGTGGTCATTTAGACCTTAGTCCAAAGGTGTACAGTAATGAGGCCTGGAACAACGTCATTGATGACGTCGATCCCCACTACTTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGATTGGCAAAGCAACACCAAGTACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCAGCACTAAAAAATTGGGCATTAAAGAATGCGATCTTCGTCACCCTCGAAGGACCACTCTACTCAAGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGCATCAGGCGTCGTCGCGTTGA |
| Protein Sequence | MTPKRFQINAKNYFFTYPKCSLTKEEALSQMLNTQTQPSKKFIKICREIHEDGAPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDTLDWGEFQIDGRSARGGQQSANDAYAQAINTGSKSEALRVIKDSHQRIMCYNFIIYMLIYIGFLHLQWRFMFSPFLHLPSIKFQKNLRNGLPRTSSVPLRGPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWNNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPLYSSSNQSAAQASQEGHQASSR |
| NCBI Accession | QBO66576.1 |
|---|---|
| Location | 2159-2452 |
| Gene Name | AC4 |
| Protein Name | AC4 protein |
| Coding Region | ATGGGGCTCCTCATCTTCACGTGCTTATCCAATTCGAAGGAAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCAGATGTCAAGTCCTATATGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCACGGGGGGGACAACAGTCAGCCAATGATGCTTACGCCCAAGCCATTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATAA |
| Protein Sequence | MGLLIFTCLSNSKENSSAKITDSSTWYPQPGQHISIRTFRELNRAQMSSPIWRRTETPSIGESFRSTDDLHGGDNSQPMMLTPKPLTQAVSQRLLES |
References More References in PubMed
| 1 |
Alabi OJ, et al. Plant Dis. 2017 Jul;101(7):1094-1102. doi: 10.1094/PDIS-01-17-0118-RE. Epub 2017 Apr 19. PMID: 30682949 |
|---|---|
| 2 |
An Insight into Emerging Begomoviruses and their Satellite Complex causing Papaya Leaf Curl Disease. Srivastava A, et al. Curr Genomics. 2023 Jun 23;24(1):2-17. doi: 10.2174/1389202924666230207111530. PMID: 37920727 |
| 3 |
Squash Yellow Leaf Curl Virus: A New Whitefly-Transmitted Poty-Like Virus. Zouba AA, et al. Plant Dis. 1998 May;82(5):475-478. doi: 10.1094/PDIS.1998.82.5.475. PMID: 30856974 |
| 4 |
Identification of Cotton leaf curl Gezira virus in Papaya in Oman. Khan AJ, et al. Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN. PMID: 30727467 |
| 5 |
Senna leaf curl virus: a novel begomovirus identified in Senna occidentalis. Kumar J, et al. Arch Virol. 2016 Sep;161(9):2609-12. doi: 10.1007/s00705-016-2931-7. Epub 2016 Jun 17. PMID: 27314944 |
| 6 |
Gireeshbai S, et al. Lett Appl Microbiol. 2022 Oct;75(4):1000-1009. doi: 10.1111/lam.13774. Epub 2022 Jul 2. PMID: 35723883 |
| 7 |
Hussain K, et al. Cell Mol Biol (Noisy-le-grand). 2022 Sep 30;68(9):129-134. doi: 10.14715/cmb/2022.68.9.20. PMID: 36905263 |
| 8 |
Akram A, et al. Arch Virol. 2020 Aug;165(8):1877-1881. doi: 10.1007/s00705-020-04633-3. Epub 2020 May 23. PMID: 32447620 |
| 9 |
Detection of tomato yellow leaf curl Thailand virus by PCR without DNA extraction. Ieamkhang S, et al. Mol Biotechnol. 2005 Nov;31(3):233-8. doi: 10.1385/MB:31:3:233. PMID: 16230773 |
| 10 |
Leaf Curl Disease of Carica papaya from India May Be Caused by a Bipartite Geminivirus. Saxena S, et al. Plant Dis. 1998 Jan;82(1):126. doi: 10.1094/PDIS.1998.82.1.126A. PMID: 30857046 |