Papaya yellow leaf curl virus

Basic Information

Genus Begomovirus
Isolate India
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

MH807204
ACCGGATGGCCGCGATTTTTAAATGGCCCGCGCAACGCAAAATCTGACAATGACATGTGGACCAATCACTTTGGCTGGTCGTGGGTTAATTTTTTTGTGGTGGCTTATTTAAAGTTGCTCACCAAGTAGTGCCTCACGTTCACTATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACCGTTCACGGTTTAAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCTCCCGATACATTATTGCACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAGGGGCTGTGAAGGACCATGTAAGGTCCAGTCATTTGAGTTCAGACATGATATACAGCATATTGGTAAAGTTATGTGTGTTAGTGATGTTACTCGTGGTATTGGTTTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAATCCGTTTATGTTTTGGGCAAGATCTGGATGGATGAGAACATCAAGACGAAGAATCATACGAATAGTGTTATGTTGTTTCTTCTTCGTGATCGAAGGCCCGTTGACAAGCCTCAAGATTTTGGTGAGGCTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGCACGCCACTGTGACAGGCGGTCAGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCATGCCTCCAACCCTGTGAATGCTACATTTCAGATACGGATCTACTTCTATGATTCCGTAACAAATTAATAAATATTGAATTTTATTGAATACGACTGTTCTACATAAATTGTTTGATCTAATACATTCCATAATACATGATCAACTGCCCTAATTACATTGTTTATACTGACAACTCCTAAATTATCTAAATACTGCATAACTTGGGTCCTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAAGCTATGAAACATTTGTGAATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGTATGGTTATGATGTCGTTGCTCATGAGGACTGGTCGGTTGTGGTGCTCTGTTATCTTGAAATACAGGGGATTTTGAATTTCCCAGGTATACACGCCATTCATTGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGTTGTGGCAGCGTAATGCGATGAAGTATGAACAGCCACAGTCCAGATCAACGCGACGACGCCTGATGCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACTTGAGTAGAGTGGTCCTTCGAGGGTGACGAAGATCGCATTCTTTAATGCCCAATTTTTTAGTGCTGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTACTTGGTGTTGCTTTGCCAATCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAGTAGTGGGGATCGACGTCATCAATGACGTTGTTCCAGGCCTCATTACTGTACACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTATGTGGTCCCAAAGACCTAGCCCACATTGTTTTCCCTGTCCGACTGTCACCCTCAATCACTATACTTATGGGTCTTAAAGGCCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCATTCCTCAAGTTCTTCTGGAACTTGATCGAAGGAAGATGAAGAAAAGGGGAAAACATAAACCTCCATTGGAGGTGCAAAAATCCTATGTAAATTAGCATATAAATTATGAAATTGTAACACATAATCCTTTGGTGCGAATCCTTTATGACTCTAAGAGCCTCTGACTTACTGCCTGTGTTAATGGCTTGGGCGTAAGCATCATTGGCTGACTGTTGTCCCCCCCGTGCAGATCGTCCGTCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCCTTCTCCATATAGGACTTGACATCTGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTTTGGCACTTGAATTTTCCTTCGAATTGGATAAGCACGTGAAGATGAGGAGCCCCATCTTCGTGTATCTCTCTGCAGATCTTGATGAATTTTTTGGATGGTTGGGTTTGGGTATTTAACATTTGGGAAAGTGCCTCTTCCTTAGTAAGTGAGCACTTAGGATATGTGAAGAAATAATTTTTGGCATTTATTTGAAACCGCTTGGGGGTCATATTGACTTGGTCAGAGGATCGGGTATCTCAGACTGGACTCTATTATCGGTGAATTGGTACTCAATATATAGTGAGACTCAAATGGCAATTTGGTCATTTTGAACAAATTATTCAAGATCCTAAAGCCCCCATCAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession QBO66572.1
Location 145-501
Gene Name AV2
Protein Name pre-coat
Coding Region ATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACCGTTCACGGTTTAAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCTCCCGATACATTATTGCACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAG
Protein Sequence MWDPLVNEFPETVHGLRCMLAVKYLQLVEKTYSPDTLLHDLIRDLISVIRARNYVEATSRYNQFHARFEGTPPSQLRQPICERYCCPNCPRHKGKGMREQANVQEAQDVQAVQKSGCS

NCBI Accession QBO66573.1
Location 305-1075
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAGGGGCTGTGAAGGACCATGTAAGGTCCAGTCATTTGAGTTCAGACATGATATACAGCATATTGGTAAAGTTATGTGTGTTAGTGATGTTACTCGTGGTATTGGTTTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAATCCGTTTATGTTTTGGGCAAGATCTGGATGGATGAGAACATCAAGACGAAGAATCATACGAATAGTGTTATGTTGTTTCTTCTTCGTGATCGAAGGCCCGTTGACAAGCCTCAAGATTTTGGTGAGGCTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGCACGCCACTGTGACAGGCGGTCAGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCATGCCTCCAACCCTGTGAATGCTACATTTCAGATACGGATCTACTTCTATGATTCCGTAACAAATTAA
Protein Sequence MSKRPADIINSTPASKVRRRLNFDSLYASGTAAPIVRVTKARACANRPMYRKPRMYRLYRSPDVPRGCEGPCKVQSFEFRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMLFLLRDRRPVDKPQDFGEAFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVNATFQIRIYFYDSVTN

NCBI Accession QBO66577.1
Location 530-820
Gene Name AC5
Protein Name AC5
Coding Region ATGAACATTCTTCACAGTCGCCGTGCTGGGCTCATTATCAAACATGTTAAAAGCCTCACCAAAATCTTGAGGCTTGTCAACGGGCCTTCGATCACGAAGAAGAAACAACATAACACTATTCGTATGATTCTTCGTCTTGATGTTCTCATCCATCCAGATCTTGCCCAAAACATAAACGGATTTCACACAGAACCTCTTGCCAACCCTGTGGGTCAAACCAATACCACGAGTAACATCACTAACACACATAACTTTACCAATATGCTGTATATCATGTCTGAACTCAAATGA
Protein Sequence MNILHSRRAGLIIKHVKSLTKILRLVNGPSITKKKQHNTIRMILRLDVLIHPDLAQNINGFHTEPLANPVGQTNTTSNITNTHNFTNMLYIMSELK

NCBI Accession QBO66575.1
Location 1072-1476
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAATGAATGGCGTGTATACCTGGGAAATTCAAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACCGACCAGTCCTCATGAGCAACGACATCATAACCATACAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCTTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAGGACCCAAGTTATGCAGTATTTAGATAATTTAGGAGTTGTCAGTATAAACAATGTAATTAGGGCAGTTGATCATGTATTATGGAATGTATTAGATCAAACAATTTATGTAGAACAGTCGTATTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEPITAAQAMNGVYTWEIQNPLYFKITEHHNRPVLMSNDIITIQVQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVMQYLDNLGVVSINNVIRAVDHVLWNVLDQTIYVEQSYSIKFNIY

NCBI Accession QBO66574.1
Location 1217-1621
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCGATCTTCGTCACCCTCGAAGGACCACTCTACTCAAGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGCATCAGGCGTCGTCGCGTTGATCTGGACTGTGGCTGTTCATACTTCATCGCATTACGCTGCCACAACTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAATGAATGGCGTGTATACCTGGGAAATTCAAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACCGACCAGTCCTCATGAGCAACGACATCATAACCATACAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCTTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAG
Protein Sequence MRSSSPSKDHSTQVPIKVQHRLAKKGIRRRRVDLDCGCSYFIALRCHNYGFTHRGTHHCSSGNEWRVYLGNSKSPVFQDNRAPQPTSPHEQRHHNHTSTVQSQPEESVGDSQMFHSFPNLDDLTASDWSFLKGL

NCBI Accession QBO66578.1
Location 1524-2606
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGACCCCCAAGCGGTTTCAAATAAATGCCAAAAATTATTTCTTCACATATCCTAAGTGCTCACTTACTAAGGAAGAGGCACTTTCCCAAATGTTAAATACCCAAACCCAACCATCCAAAAAATTCATCAAGATCTGCAGAGAGATACACGAAGATGGGGCTCCTCATCTTCACGTGCTTATCCAATTCGAAGGAAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCAGATGTCAAGTCCTATATGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCACGGGGGGGACAACAGTCAGCCAATGATGCTTACGCCCAAGCCATTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATAAAGGATTCGCACCAAAGGATTATGTGTTACAATTTCATAATTTATATGCTAATTTACATAGGATTTTTGCACCTCCAATGGAGGTTTATGTTTTCCCCTTTTCTTCATCTTCCTTCGATCAAGTTCCAGAAGAACTTGAGGAATGGGCTGCCGAGAACGTCGTCAGTGCCGCTGCGCGGGCCTTTAAGACCCATAAGTATAGTGATTGAGGGTGACAGTCGGACAGGGAAAACAATGTGGGCTAGGTCTTTGGGACCACATAATTATCTGTGTGGTCATTTAGACCTTAGTCCAAAGGTGTACAGTAATGAGGCCTGGAACAACGTCATTGATGACGTCGATCCCCACTACTTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGATTGGCAAAGCAACACCAAGTACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCAGCACTAAAAAATTGGGCATTAAAGAATGCGATCTTCGTCACCCTCGAAGGACCACTCTACTCAAGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGCATCAGGCGTCGTCGCGTTGA
Protein Sequence MTPKRFQINAKNYFFTYPKCSLTKEEALSQMLNTQTQPSKKFIKICREIHEDGAPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDTLDWGEFQIDGRSARGGQQSANDAYAQAINTGSKSEALRVIKDSHQRIMCYNFIIYMLIYIGFLHLQWRFMFSPFLHLPSIKFQKNLRNGLPRTSSVPLRGPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWNNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPLYSSSNQSAAQASQEGHQASSR

NCBI Accession QBO66576.1
Location 2159-2452
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGGCTCCTCATCTTCACGTGCTTATCCAATTCGAAGGAAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCAGATGTCAAGTCCTATATGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCACGGGGGGGACAACAGTCAGCCAATGATGCTTACGCCCAAGCCATTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATAA
Protein Sequence MGLLIFTCLSNSKENSSAKITDSSTWYPQPGQHISIRTFRELNRAQMSSPIWRRTETPSIGESFRSTDDLHGGDNSQPMMLTPKPLTQAVSQRLLES

References More References in PubMed

1

Identification of Cotton leaf curl Gezira virus in Papaya in Oman.

Khan AJ, et al.  Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN.

PMID: 30727467
2

An anomalous detection of Tomato yellow leaf curl virus in tomato in New York State.

Perry KL.  Plant Dis. 2021 Apr 28. doi: 10.1094/PDIS-02-21-0356-PDN. Online ahead of print.

PMID: 33908793
3

Codiaeum variegatum in Pakistan harbours pedilanthus leaf curl virus and papaya leaf curl virus as well as a newly identified betasatellite.

Akram A, et al.  Arch Virol. 2020 Aug;165(8):1877-1881. doi: 10.1007/s00705-020-04633-3. Epub 2020 May 23.

PMID: 32447620
4

A Mixed Infection of Lettuce chlorosis virus, Papaya ringspot virus, and Tomato yellow leaf curl virus-IL Detected in a Texas Papaya Orchard Affected by a Virus-Like Disease Outbreak.

Alabi OJ, et al.  Plant Dis. 2017 Jul;101(7):1094-1102. doi: 10.1094/PDIS-01-17-0118-RE. Epub 2017 Apr 19.

PMID: 30682949
5

Senna leaf curl virus: a novel begomovirus identified in Senna occidentalis.

Kumar J, et al.  Arch Virol. 2016 Sep;161(9):2609-12. doi: 10.1007/s00705-016-2931-7. Epub 2016 Jun 17.

PMID: 27314944
6

Squash Yellow Leaf Curl Virus: A New Whitefly-Transmitted Poty-Like Virus.

Zouba AA, et al.  Plant Dis. 1998 May;82(5):475-478. doi: 10.1094/PDIS.1998.82.5.475.

PMID: 30856974
7

Detection of tomato yellow leaf curl Thailand virus by PCR without DNA extraction.

Ieamkhang S, et al.  Mol Biotechnol. 2005 Nov;31(3):233-8. doi: 10.1385/MB:31:3:233.

PMID: 16230773
8

Molecular characterization and infectivity of a Tomato leaf curl New Delhi virus variant associated with newly emerging yellow mosaic disease of eggplant in India.

Pratap D, et al.  Virol J. 2011 Jun 16;8:305. doi: 10.1186/1743-422X-8-305.

PMID: 21676270
9

Characterization, phylogeny and recombination analysis of Pedilanthus leaf curl virus-Petunia isolate and its associated betasatellite.

Shakir S, et al.  Virol J. 2018 Aug 31;15(1):134. doi: 10.1186/s12985-018-1047-y.

PMID: 30165872
10

Mixed infection of a new begomovirus, Jatropha leaf curl Guntur virus and recombinant/chimeric jatropha leaf curl Gujarat virus in Jatropha gossypiifolia.

Gireeshbai S, et al.  Lett Appl Microbiol. 2022 Oct;75(4):1000-1009. doi: 10.1111/lam.13774. Epub 2022 Jul 2.

PMID: 35723883