Papaya yellow leaf curl virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTAAATGGCCCGCGCAACGCAAAATCTGACAATGACATGTGGACCAATCACTTTGGCTGGTCGTGGGTTAATTTTTTTGTGGTGGCTTATTTAAAGTTGCTCACCAAGTAGTGCCTCACGTTCACTATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACCGTTCACGGTTTAAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCTCCCGATACATTATTGCACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAGGGGCTGTGAAGGACCATGTAAGGTCCAGTCATTTGAGTTCAGACATGATATACAGCATATTGGTAAAGTTATGTGTGTTAGTGATGTTACTCGTGGTATTGGTTTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAATCCGTTTATGTTTTGGGCAAGATCTGGATGGATGAGAACATCAAGACGAAGAATCATACGAATAGTGTTATGTTGTTTCTTCTTCGTGATCGAAGGCCCGTTGACAAGCCTCAAGATTTTGGTGAGGCTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGCACGCCACTGTGACAGGCGGTCAGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCATGCCTCCAACCCTGTGAATGCTACATTTCAGATACGGATCTACTTCTATGATTCCGTAACAAATTAATAAATATTGAATTTTATTGAATACGACTGTTCTACATAAATTGTTTGATCTAATACATTCCATAATACATGATCAACTGCCCTAATTACATTGTTTATACTGACAACTCCTAAATTATCTAAATACTGCATAACTTGGGTCCTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAAGCTATGAAACATTTGTGAATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGTATGGTTATGATGTCGTTGCTCATGAGGACTGGTCGGTTGTGGTGCTCTGTTATCTTGAAATACAGGGGATTTTGAATTTCCCAGGTATACACGCCATTCATTGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGTTGTGGCAGCGTAATGCGATGAAGTATGAACAGCCACAGTCCAGATCAACGCGACGACGCCTGATGCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACTTGAGTAGAGTGGTCCTTCGAGGGTGACGAAGATCGCATTCTTTAATGCCCAATTTTTTAGTGCTGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTACTTGGTGTTGCTTTGCCAATCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAGTAGTGGGGATCGACGTCATCAATGACGTTGTTCCAGGCCTCATTACTGTACACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTATGTGGTCCCAAAGACCTAGCCCACATTGTTTTCCCTGTCCGACTGTCACCCTCAATCACTATACTTATGGGTCTTAAAGGCCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCATTCCTCAAGTTCTTCTGGAACTTGATCGAAGGAAGATGAAGAAAAGGGGAAAACATAAACCTCCATTGGAGGTGCAAAAATCCTATGTAAATTAGCATATAAATTATGAAATTGTAACACATAATCCTTTGGTGCGAATCCTTTATGACTCTAAGAGCCTCTGACTTACTGCCTGTGTTAATGGCTTGGGCGTAAGCATCATTGGCTGACTGTTGTCCCCCCCGTGCAGATCGTCCGTCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCCTTCTCCATATAGGACTTGACATCTGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTTTGGCACTTGAATTTTCCTTCGAATTGGATAAGCACGTGAAGATGAGGAGCCCCATCTTCGTGTATCTCTCTGCAGATCTTGATGAATTTTTTGGATGGTTGGGTTTGGGTATTTAACATTTGGGAAAGTGCCTCTTCCTTAGTAAGTGAGCACTTAGGATATGTGAAGAAATAATTTTTGGCATTTATTTGAAACCGCTTGGGGGTCATATTGACTTGGTCAGAGGATCGGGTATCTCAGACTGGACTCTATTATCGGTGAATTGGTACTCAATATATAGTGAGACTCAAATGGCAATTTGGTCATTTTGAACAAATTATTCAAGATCCTAAAGCCCCCATCAGCGGCCATCCGTATAATATT
Gene Information
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NCBI Accession
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QBO66572.1
|
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Location
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145-501 |
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Gene Name
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AV2 |
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Protein Name
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pre-coat |
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Coding Region
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ATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACCGTTCACGGTTTAAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCTCCCGATACATTATTGCACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAG |
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Protein Sequence
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MWDPLVNEFPETVHGLRCMLAVKYLQLVEKTYSPDTLLHDLIRDLISVIRARNYVEATSRYNQFHARFEGTPPSQLRQPICERYCCPNCPRHKGKGMREQANVQEAQDVQAVQKSGCS |
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NCBI Accession
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QBO66573.1
|
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Location
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305-1075 |
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Gene Name
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AV1 |
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Protein Name
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coat protein |
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Coding Region
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ATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAGGGGCTGTGAAGGACCATGTAAGGTCCAGTCATTTGAGTTCAGACATGATATACAGCATATTGGTAAAGTTATGTGTGTTAGTGATGTTACTCGTGGTATTGGTTTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAATCCGTTTATGTTTTGGGCAAGATCTGGATGGATGAGAACATCAAGACGAAGAATCATACGAATAGTGTTATGTTGTTTCTTCTTCGTGATCGAAGGCCCGTTGACAAGCCTCAAGATTTTGGTGAGGCTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGCACGCCACTGTGACAGGCGGTCAGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCATGCCTCCAACCCTGTGAATGCTACATTTCAGATACGGATCTACTTCTATGATTCCGTAACAAATTAA |
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Protein Sequence
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MSKRPADIINSTPASKVRRRLNFDSLYASGTAAPIVRVTKARACANRPMYRKPRMYRLYRSPDVPRGCEGPCKVQSFEFRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMLFLLRDRRPVDKPQDFGEAFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVNATFQIRIYFYDSVTN |
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NCBI Accession
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QBO66577.1
|
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Location
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530-820 |
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Gene Name
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AC5 |
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Protein Name
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AC5 |
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Coding Region
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ATGAACATTCTTCACAGTCGCCGTGCTGGGCTCATTATCAAACATGTTAAAAGCCTCACCAAAATCTTGAGGCTTGTCAACGGGCCTTCGATCACGAAGAAGAAACAACATAACACTATTCGTATGATTCTTCGTCTTGATGTTCTCATCCATCCAGATCTTGCCCAAAACATAAACGGATTTCACACAGAACCTCTTGCCAACCCTGTGGGTCAAACCAATACCACGAGTAACATCACTAACACACATAACTTTACCAATATGCTGTATATCATGTCTGAACTCAAATGA |
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Protein Sequence
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MNILHSRRAGLIIKHVKSLTKILRLVNGPSITKKKQHNTIRMILRLDVLIHPDLAQNINGFHTEPLANPVGQTNTTSNITNTHNFTNMLYIMSELK |
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NCBI Accession
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QBO66575.1
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Location
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1072-1476 |
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Gene Name
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AC3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAATGAATGGCGTGTATACCTGGGAAATTCAAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACCGACCAGTCCTCATGAGCAACGACATCATAACCATACAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCTTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAGGACCCAAGTTATGCAGTATTTAGATAATTTAGGAGTTGTCAGTATAAACAATGTAATTAGGGCAGTTGATCATGTATTATGGAATGTATTAGATCAAACAATTTATGTAGAACAGTCGTATTCAATAAAATTCAATATTTATTAA |
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Protein Sequence
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MDSRTGEPITAAQAMNGVYTWEIQNPLYFKITEHHNRPVLMSNDIITIQVQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVMQYLDNLGVVSINNVIRAVDHVLWNVLDQTIYVEQSYSIKFNIY |
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NCBI Accession
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QBO66574.1
|
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Location
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1217-1621 |
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Gene Name
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AC2 |
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Protein Name
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transcriptional activator protein |
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Coding Region
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ATGCGATCTTCGTCACCCTCGAAGGACCACTCTACTCAAGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGCATCAGGCGTCGTCGCGTTGATCTGGACTGTGGCTGTTCATACTTCATCGCATTACGCTGCCACAACTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAATGAATGGCGTGTATACCTGGGAAATTCAAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACCGACCAGTCCTCATGAGCAACGACATCATAACCATACAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCTTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAG |
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Protein Sequence
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MRSSSPSKDHSTQVPIKVQHRLAKKGIRRRRVDLDCGCSYFIALRCHNYGFTHRGTHHCSSGNEWRVYLGNSKSPVFQDNRAPQPTSPHEQRHHNHTSTVQSQPEESVGDSQMFHSFPNLDDLTASDWSFLKGL |
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NCBI Accession
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QBO66578.1
|
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Location
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1524-2606 |
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Gene Name
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AC1 |
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Protein Name
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replication associated protein |
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Coding Region
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ATGACCCCCAAGCGGTTTCAAATAAATGCCAAAAATTATTTCTTCACATATCCTAAGTGCTCACTTACTAAGGAAGAGGCACTTTCCCAAATGTTAAATACCCAAACCCAACCATCCAAAAAATTCATCAAGATCTGCAGAGAGATACACGAAGATGGGGCTCCTCATCTTCACGTGCTTATCCAATTCGAAGGAAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCAGATGTCAAGTCCTATATGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCACGGGGGGGACAACAGTCAGCCAATGATGCTTACGCCCAAGCCATTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATAAAGGATTCGCACCAAAGGATTATGTGTTACAATTTCATAATTTATATGCTAATTTACATAGGATTTTTGCACCTCCAATGGAGGTTTATGTTTTCCCCTTTTCTTCATCTTCCTTCGATCAAGTTCCAGAAGAACTTGAGGAATGGGCTGCCGAGAACGTCGTCAGTGCCGCTGCGCGGGCCTTTAAGACCCATAAGTATAGTGATTGAGGGTGACAGTCGGACAGGGAAAACAATGTGGGCTAGGTCTTTGGGACCACATAATTATCTGTGTGGTCATTTAGACCTTAGTCCAAAGGTGTACAGTAATGAGGCCTGGAACAACGTCATTGATGACGTCGATCCCCACTACTTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGATTGGCAAAGCAACACCAAGTACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCAGCACTAAAAAATTGGGCATTAAAGAATGCGATCTTCGTCACCCTCGAAGGACCACTCTACTCAAGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGCATCAGGCGTCGTCGCGTTGA |
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Protein Sequence
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MTPKRFQINAKNYFFTYPKCSLTKEEALSQMLNTQTQPSKKFIKICREIHEDGAPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDTLDWGEFQIDGRSARGGQQSANDAYAQAINTGSKSEALRVIKDSHQRIMCYNFIIYMLIYIGFLHLQWRFMFSPFLHLPSIKFQKNLRNGLPRTSSVPLRGPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWNNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPLYSSSNQSAAQASQEGHQASSR |
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NCBI Accession
|
QBO66576.1
|
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Location
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2159-2452 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGGGGCTCCTCATCTTCACGTGCTTATCCAATTCGAAGGAAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCAGATGTCAAGTCCTATATGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCACGGGGGGGACAACAGTCAGCCAATGATGCTTACGCCCAAGCCATTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATAA |
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Protein Sequence
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MGLLIFTCLSNSKENSSAKITDSSTWYPQPGQHISIRTFRELNRAQMSSPIWRRTETPSIGESFRSTDDLHGGDNSQPMMLTPKPLTQAVSQRLLES |