Papaya severe leaf curl virus 2
Basic Information
| Genus | Begomovirus |
|---|---|
| Isolate | India |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
MH988458
ACCGGATGGCCGCGATTTTTTTTTTGTGGCCCCAACAAAGCACTAACTGACAATGACAAGTTGACCAATGAGAATCGTTCCTCGTCGCCTAATTGTTTCGGGGTTCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTTCCCTTCACTATGTGGGATCCATTGTTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATTTGCAGTTAGTAGAAAAGACTTATTCTCCCGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAGGGGCTGGGAAGGTCCAGTTAAGGTCCAGTCCTTTGGATGCAGACATGATTTTGATCACATGGGTAAGGCCATTTGTCTTTGTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGCGAAGAGGTTTTGTGTGAAGTCTGTTTATGTGTTGGGTAAAATATGGATGGATGAAAATATAAAGACCAAGAATCACACGAACAATGTGATGTTCTTTCTCGTTCGTGACCGTAGACCAGTTGACAAGCCTCAGGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGTGACGGTGAAAAATGTGCATCGGGATAGGTACCAGGTGCTCAGGAAGTGGCATGCAACTGTGACAGGGGGTCAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAACAAGAGGCTGGCAAATATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACGCACGCCTCTAATCCCGTGTATGCTACATTGAAGATACGGATCTACTTCTATGACTCTGTATCGAATTAATAAATATAGAATTTTATTGAAGATGATTGGTCTAAATATACATCATGTTCTGATACATCGTATAATACATGTTTAAAGGCCCTAACTACATTATTTATACTAATGACTCCTAGATTATCTAAATACTTTAAAACCTGACTCCTAAAGACTCTTAAGAAATGCCCGGTCTGAGGTTGTAAAGCCATGCAGATTCTTAAGCCCAAAAAACACTTCAGTATCCTCAGTTCCTTCCTGAGGTTGTGATTGAACTGGATCTGGAGAGTGATGATGTCGTGGTTCATGGAAAATGGCCTTTGGTCGTGGTCTGAGGACTTGAAATATAGGGGATTTGGGACCTTCCAGATATACACCCCATTCATTTCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTGGCAGGCTGATGGTACGTAGTAAGAGCAACCACCCTCGAGATCAACACTTCGCCGGATGGTCCCCTGCTTGGCTAGCCTGTGTTGGACCTTGATTGGTACCTGAGTACAGTGGCTCTGTGAGGGTGATGAATTTTGCATTCTTTATAGCCCACGCTCTTAGTGCCGAATTCTTGTCCTCGTCCAAGAACTCTTTATAGCTGGAAGTGGACCCAGGATTGCAGAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTCTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAGACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTGTGTGGACCCAGTGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTAAGACAATACTTTTAGATCTCAATGGCCGCGCAGCGGTACCCATCACATTTTCAGCAGCCCATTCCTCTATGGCCTCCGGCACCTGATCGAATGAACAACAAGAAATGGGGGAAACATAAACCTCCACTGGAGGTGTCCAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAATCTTCCGGGAGTTTCTCCCTAATAATTGCTAAAGCAGCTTCCGCTGAACCTGCATTTAGGGCCTCCGCTGCACCATCACTACCTGTCTGTTGACCTCCACTAGCAAATCGCCCACCGATCTGAAACTCACCCCAGTCGATGTACTCTCCGCCCTTCTGGATGTAGGACTTGACACCTGACCTGCACTTAGCTCCCTGAAACCCGGGGTGGAACTGGCTTGAGGTATTAGGGCGAGCGATTTCAAAATGTCTGTCTTCTCTGAACCGCAATTTCCCTTTGAATTGGATGAAACCCTGGATACGCAGAGACCAATCTTGGTGTTTTTCTTTTGATACTCTGATAAACAATTTATCAAGAGGACAGGTAATGTTTTTAAATAGTTCGAGCATTTGCTCTTTGCGTATTGGGCATTTGGGATAAGTAAGGAAGATATTTTCGGCATTTATACAGAAGGAGTTATTACGACGCATATTGGATTGGAGACATTCAAAACTCTGAGGAATCCGGGACTCCCGGGACGCAATTATATGGTGTCCCCAAATGGCAATTTGGTAATTCAGAAAGAAATTTCAAAATCTCCACGCTCCAAACCGCGGCCATCCGTATAATATT
Gene Information
| NCBI Accession | QBP05521.1 |
|---|---|
| Location | 148-504 |
| Gene Name | AV2 |
| Protein Name | pre-coat |
| Coding Region | ATGTGGGATCCATTGTTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATTTGCAGTTAGTAGAAAAGACTTATTCTCCCGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAG |
| Protein Sequence | MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYGEATSRYHHFNARIEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKAQDVRDVQKSRCP |
| NCBI Accession | QBP05522.1 |
|---|---|
| Location | 308-1078 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAGGGGCTGGGAAGGTCCAGTTAAGGTCCAGTCCTTTGGATGCAGACATGATTTTGATCACATGGGTAAGGCCATTTGTCTTTGTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGCGAAGAGGTTTTGTGTGAAGTCTGTTTATGTGTTGGGTAAAATATGGATGGATGAAAATATAAAGACCAAGAATCACACGAACAATGTGATGTTCTTTCTCGTTCGTGACCGTAGACCAGTTGACAAGCCTCAGGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGTGACGGTGAAAAATGTGCATCGGGATAGGTACCAGGTGCTCAGGAAGTGGCATGCAACTGTGACAGGGGGTCAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAACAAGAGGCTGGCAAATATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACGCACGCCTCTAATCCCGTGTATGCTACATTGAAGATACGGATCTACTTCTATGACTCTGTATCGAATTAA |
| Protein Sequence | MAKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWANRPMNRKPRMSGMYRSPDVPRGWEGPVKVQSFGCRHDFDHMGKAICLCDVTRGIGLTHRVAKRFCVKSVYVLGKIWMDENIKTKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTVTVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
| NCBI Accession | QBP05527.1 |
|---|---|
| Location | 338-973 |
| Gene Name | AC5 |
| Protein Name | AC5 |
| Coding Region | ATGATTCTCATATTTGCCAGCCTCTTGTTGGTTGTACACAACATAATTATTAACCCTAATAAACTTCTTCACGAGAGCCTGCTCCTTCGATGCATATTGACCCCCTGTCACAGTTGCATGCCACTTCCTGAGCACCTGGTACCTATCCCGATGCACATTTTTCACCGTCACCGTGCTGGGCTCATTATCAAACATGTTAAAAACCTCACCAAAATCCTGAGGCTTGTCAACTGGTCTACGGTCACGAACGAGAAAGAACATCACATTGTTCGTGTGATTCTTGGTCTTTATATTTTCATCCATCCATATTTTACCCAACACATAAACAGACTTCACACAAAACCTCTTCGCTACTCGATGGGTCAGCCCAATACCCCTAGTAACATCACAAAGACAAATGGCCTTACCCATGTGATCAAAATCATGTCTGCATCCAAAGGACTGGACCTTAACTGGACCTTCCCAGCCCCTAGGGACATCTGGACTTCTGTACATCCCGGACATCCTGGGCTTTCTGTTCATGGGCCTGTTCGCCCATGCTTTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCACATATGGGCTGTCGAAGTTGAGACGGCGACGTACCTTCGATGCGGGCGTTGA |
| Protein Sequence | MILIFASLLLVVHNIIINPNKLLHESLLLRCILTPCHSCMPLPEHLVPIPMHIFHRHRAGLIIKHVKNLTKILRLVNWSTVTNEKEHHIVRVILGLYIFIHPYFTQHINRLHTKPLRYSMGQPNTPSNITKTNGLTHVIKIMSASKGLDLNWTFPAPRDIWTSVHPGHPGLSVHGPVRPCFCFGDADNGGSSTAHIWAVEVETATYLRCGR |
| NCBI Accession | QBP05525.1 |
|---|---|
| Location | 1075-1479 |
| Gene Name | AC3 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGAAATGAATGGGGTGTATATCTGGAAGGTCCCAAATCCCCTATATTTCAAGTCCTCAGACCACGACCAAAGGCCATTTTCCATGAACCACGACATCATCACTCTCCAGATCCAGTTCAATCACAACCTCAGGAAGGAACTGAGGATACTGAAGTGTTTTTTGGGCTTAAGAATCTGCATGGCTTTACAACCTCAGACCGGGCATTTCTTAAGAGTCTTTAGGAGTCAGGTTTTAAAGTATTTAGATAATCTAGGAGTCATTAGTATAAATAATGTAGTTAGGGCCTTTAAACATGTATTATACGATGTATCAGAACATGATGTATATTTAGACCAATCATCTTCAATAAAATTCTATATTTATTAA |
| Protein Sequence | MDSRTGELITAAQEMNGVYIWKVPNPLYFKSSDHDQRPFSMNHDIITLQIQFNHNLRKELRILKCFLGLRICMALQPQTGHFLRVFRSQVLKYLDNLGVISINNVVRAFKHVLYDVSEHDVYLDQSSSIKFYIY |
| NCBI Accession | QBP05524.1 |
|---|---|
| Location | 1220-1624 |
| Gene Name | AC2 |
| Protein Name | transcriptional activator protein |
| Coding Region | ATGCAAAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCAGGGGACCATCCGGCGAAGTGTTGATCTCGAGGGTGGTTGCTCTTACTACGTACCATCAGCCTGCCACAATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGAAATGAATGGGGTGTATATCTGGAAGGTCCCAAATCCCCTATATTTCAAGTCCTCAGACCACGACCAAAGGCCATTTTCCATGAACCACGACATCATCACTCTCCAGATCCAGTTCAATCACAACCTCAGGAAGGAACTGAGGATACTGAAGTGTTTTTTGGGCTTAAGAATCTGCATGGCTTTACAACCTCAGACCGGGCATTTCTTAAGAGTCTTTAG |
| Protein Sequence | MQNSSPSQSHCTQVPIKVQHRLAKQGTIRRSVDLEGGCSYYVPSACHNHGFTHRGTHHCSSGNEWGVYLEGPKSPIFQVLRPRPKAIFHEPRHHHSPDPVQSQPQEGTEDTEVFFGLKNLHGFTTSDRAFLKSL |
| NCBI Accession | QBP05523.1 |
|---|---|
| Location | 1527-2612 |
| Gene Name | AC1 |
| Protein Name | replication associated protein |
| Coding Region | ATGCGTCGTAATAACTCCTTCTGTATAAATGCCGAAAATATCTTCCTTACTTATCCCAAATGCCCAATACGCAAAGAGCAAATGCTCGAACTATTTAAAAACATTACCTGTCCTCTTGATAAATTGTTTATCAGAGTATCAAAAGAAAAACACCAAGATTGGTCTCTGCGTATCCAGGGTTTCATCCAATTCAAAGGGAAATTGCGGTTCAGAGAAGACAGACATTTTGAAATCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCCGGGTTTCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAGTGATGGTGCAGCGGAGGCCCTAAATGCAGGTTCAGCGGAAGCTGCTTTAGCAATTATTAGGGAGAAACTCCCGGAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTGGACACCTCCAGTGGAGGTTTATGTTTCCCCCATTTCTTGTTGTTCATTCGATCAGGTGCCGGAGGCCATAGAGGAATGGGCTGCTGAAAATGTGATGGGTACCGCTGCGCGGCCATTGAGATCTAAAAGTATTGTCTTAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCACTGGGTCCACACAATTATCTGTGTGGTCATTTAGACCTTAGTCCAAAGGTCTACAGCAACGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAGAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCCGTTCAAATTAAAGGGGGCATTCCCACTATCTTCCTCTGCAATCCTGGGTCCACTTCCAGCTATAAAGAGTTCTTGGACGAGGACAAGAATTCGGCACTAAGAGCGTGGGCTATAAAGAATGCAAAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCAGGGGACCATCCGGCGAAGTGTTGA |
| Protein Sequence | MRRNNSFCINAENIFLTYPKCPIRKEQMLELFKNITCPLDKLFIRVSKEKHQDWSLRIQGFIQFKGKLRFREDRHFEIARPNTSSQFHPGFQGAKCRSGVKSYIQKGGEYIDWGEFQIGGRFASGGQQTGSDGAAEALNAGSAEAALAIIREKLPEDFIFQYHNLKNNLDRIWTPPVEVYVSPISCCSFDQVPEAIEEWAAENVMGTAARPLRSKSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLEHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGSTSSYKEFLDEDKNSALRAWAIKNAKFITLTEPLYSGTNQGPTQASQAGDHPAKC |
| NCBI Accession | QBP05526.1 |
|---|---|
| Location | 2198-2584 |
| Gene Name | AC4 |
| Protein Name | AC4 protein |
| Coding Region | ATGCCGAAAATATCTTCCTTACTTATCCCAAATGCCCAATACGCAAAGAGCAAATGCTCGAACTATTTAAAAACATTACCTGTCCTCTTGATAAATTGTTTATCAGAGTATCAAAAGAAAAACACCAAGATTGGTCTCTGCGTATCCAGGGTTTCATCCAATTCAAAGGGAAATTGCGGTTCAGAGAAGACAGACATTTTGAAATCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCCGGGTTTCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAGTGATGGTGCAGCGGAGGCCCTAA |
| Protein Sequence | MPKISSLLIPNAQYAKSKCSNYLKTLPVLLINCLSEYQKKNTKIGLCVSRVSSNSKGNCGSEKTDILKSLALIPQASSTPGFRELSAGQVSSPTSRRAESTSTGVSFRSVGDLLVEVNRQVVMVQRRP |
References More References in PubMed
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Ammara UE, et al. Plant Dis. 2015 Mar;99(3):421. doi: 10.1094/PDIS-09-14-0912-PDN. PMID: 30699712 |
|---|---|
| 2 |
Identification of Cotton leaf curl Gezira virus in Papaya in Oman. Khan AJ, et al. Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN. PMID: 30727467 |
| 3 |
Srivastava A, et al. Front Microbiol. 2024 Mar 21;15:1340275. doi: 10.3389/fmicb.2024.1340275. eCollection 2024. PMID: 38605706 |
| 4 |
First Report of Tomato leaf curl Palampur virus on Bitter Gourd in Pakistan. Ali I, et al. Plant Dis. 2010 Feb;94(2):276. doi: 10.1094/PDIS-94-2-0276A. PMID: 30754274 |
| 5 |
Alabi OJ, et al. Plant Dis. 2017 Jul;101(7):1094-1102. doi: 10.1094/PDIS-01-17-0118-RE. Epub 2017 Apr 19. PMID: 30682949 |
| 6 |
Squash Yellow Leaf Curl Virus: A New Whitefly-Transmitted Poty-Like Virus. Zouba AA, et al. Plant Dis. 1998 May;82(5):475-478. doi: 10.1094/PDIS.1998.82.5.475. PMID: 30856974 |
| 7 |
Leaf Curl Disease of Carica papaya from India May Be Caused by a Bipartite Geminivirus. Saxena S, et al. Plant Dis. 1998 Jan;82(1):126. doi: 10.1094/PDIS.1998.82.1.126A. PMID: 30857046 |
| 8 |
Zhang H, et al. J Zhejiang Univ Sci B. 2010 Feb;11(2):109-14. doi: 10.1631/jzus.B0900176. PMID: 20104645 |
| 9 |
Identification of an emerging cucumber virus in Taiwan using Oxford nanopore sequencing technology. Dong ZX, et al. Plant Methods. 2022 Dec 22;18(1):143. doi: 10.1186/s13007-022-00976-x. PMID: 36550551 |
| 10 |
Pratap D, et al. Virol J. 2011 Jun 16;8:305. doi: 10.1186/1743-422X-8-305. PMID: 21676270 |