Papaya severe leaf curl virus 2
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTTTGTGGCCCCAACAAAGCACTAACTGACAATGACAAGTTGACCAATGAGAATCGTTCCTCGTCGCCTAATTGTTTCGGGGTTCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTTCCCTTCACTATGTGGGATCCATTGTTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATTTGCAGTTAGTAGAAAAGACTTATTCTCCCGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAGGGGCTGGGAAGGTCCAGTTAAGGTCCAGTCCTTTGGATGCAGACATGATTTTGATCACATGGGTAAGGCCATTTGTCTTTGTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGCGAAGAGGTTTTGTGTGAAGTCTGTTTATGTGTTGGGTAAAATATGGATGGATGAAAATATAAAGACCAAGAATCACACGAACAATGTGATGTTCTTTCTCGTTCGTGACCGTAGACCAGTTGACAAGCCTCAGGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGTGACGGTGAAAAATGTGCATCGGGATAGGTACCAGGTGCTCAGGAAGTGGCATGCAACTGTGACAGGGGGTCAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAACAAGAGGCTGGCAAATATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACGCACGCCTCTAATCCCGTGTATGCTACATTGAAGATACGGATCTACTTCTATGACTCTGTATCGAATTAATAAATATAGAATTTTATTGAAGATGATTGGTCTAAATATACATCATGTTCTGATACATCGTATAATACATGTTTAAAGGCCCTAACTACATTATTTATACTAATGACTCCTAGATTATCTAAATACTTTAAAACCTGACTCCTAAAGACTCTTAAGAAATGCCCGGTCTGAGGTTGTAAAGCCATGCAGATTCTTAAGCCCAAAAAACACTTCAGTATCCTCAGTTCCTTCCTGAGGTTGTGATTGAACTGGATCTGGAGAGTGATGATGTCGTGGTTCATGGAAAATGGCCTTTGGTCGTGGTCTGAGGACTTGAAATATAGGGGATTTGGGACCTTCCAGATATACACCCCATTCATTTCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTGGCAGGCTGATGGTACGTAGTAAGAGCAACCACCCTCGAGATCAACACTTCGCCGGATGGTCCCCTGCTTGGCTAGCCTGTGTTGGACCTTGATTGGTACCTGAGTACAGTGGCTCTGTGAGGGTGATGAATTTTGCATTCTTTATAGCCCACGCTCTTAGTGCCGAATTCTTGTCCTCGTCCAAGAACTCTTTATAGCTGGAAGTGGACCCAGGATTGCAGAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTCTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAGACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTGTGTGGACCCAGTGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTAAGACAATACTTTTAGATCTCAATGGCCGCGCAGCGGTACCCATCACATTTTCAGCAGCCCATTCCTCTATGGCCTCCGGCACCTGATCGAATGAACAACAAGAAATGGGGGAAACATAAACCTCCACTGGAGGTGTCCAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAATCTTCCGGGAGTTTCTCCCTAATAATTGCTAAAGCAGCTTCCGCTGAACCTGCATTTAGGGCCTCCGCTGCACCATCACTACCTGTCTGTTGACCTCCACTAGCAAATCGCCCACCGATCTGAAACTCACCCCAGTCGATGTACTCTCCGCCCTTCTGGATGTAGGACTTGACACCTGACCTGCACTTAGCTCCCTGAAACCCGGGGTGGAACTGGCTTGAGGTATTAGGGCGAGCGATTTCAAAATGTCTGTCTTCTCTGAACCGCAATTTCCCTTTGAATTGGATGAAACCCTGGATACGCAGAGACCAATCTTGGTGTTTTTCTTTTGATACTCTGATAAACAATTTATCAAGAGGACAGGTAATGTTTTTAAATAGTTCGAGCATTTGCTCTTTGCGTATTGGGCATTTGGGATAAGTAAGGAAGATATTTTCGGCATTTATACAGAAGGAGTTATTACGACGCATATTGGATTGGAGACATTCAAAACTCTGAGGAATCCGGGACTCCCGGGACGCAATTATATGGTGTCCCCAAATGGCAATTTGGTAATTCAGAAAGAAATTTCAAAATCTCCACGCTCCAAACCGCGGCCATCCGTATAATATT
Gene Information
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NCBI Accession
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QBP05521.1
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Location
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148-504 |
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Gene Name
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AV2 |
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Protein Name
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pre-coat |
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Coding Region
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ATGTGGGATCCATTGTTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATTTGCAGTTAGTAGAAAAGACTTATTCTCCCGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAG |
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Protein Sequence
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MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYGEATSRYHHFNARIEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKAQDVRDVQKSRCP |
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NCBI Accession
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QBP05522.1
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Location
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308-1078 |
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Gene Name
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AV1 |
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Protein Name
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coat protein |
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Coding Region
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ATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAGGGGCTGGGAAGGTCCAGTTAAGGTCCAGTCCTTTGGATGCAGACATGATTTTGATCACATGGGTAAGGCCATTTGTCTTTGTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGCGAAGAGGTTTTGTGTGAAGTCTGTTTATGTGTTGGGTAAAATATGGATGGATGAAAATATAAAGACCAAGAATCACACGAACAATGTGATGTTCTTTCTCGTTCGTGACCGTAGACCAGTTGACAAGCCTCAGGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGTGACGGTGAAAAATGTGCATCGGGATAGGTACCAGGTGCTCAGGAAGTGGCATGCAACTGTGACAGGGGGTCAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAACAAGAGGCTGGCAAATATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACGCACGCCTCTAATCCCGTGTATGCTACATTGAAGATACGGATCTACTTCTATGACTCTGTATCGAATTAA |
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Protein Sequence
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MAKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWANRPMNRKPRMSGMYRSPDVPRGWEGPVKVQSFGCRHDFDHMGKAICLCDVTRGIGLTHRVAKRFCVKSVYVLGKIWMDENIKTKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTVTVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
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NCBI Accession
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QBP05527.1
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Location
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338-973 |
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Gene Name
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AC5 |
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Protein Name
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AC5 |
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Coding Region
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ATGATTCTCATATTTGCCAGCCTCTTGTTGGTTGTACACAACATAATTATTAACCCTAATAAACTTCTTCACGAGAGCCTGCTCCTTCGATGCATATTGACCCCCTGTCACAGTTGCATGCCACTTCCTGAGCACCTGGTACCTATCCCGATGCACATTTTTCACCGTCACCGTGCTGGGCTCATTATCAAACATGTTAAAAACCTCACCAAAATCCTGAGGCTTGTCAACTGGTCTACGGTCACGAACGAGAAAGAACATCACATTGTTCGTGTGATTCTTGGTCTTTATATTTTCATCCATCCATATTTTACCCAACACATAAACAGACTTCACACAAAACCTCTTCGCTACTCGATGGGTCAGCCCAATACCCCTAGTAACATCACAAAGACAAATGGCCTTACCCATGTGATCAAAATCATGTCTGCATCCAAAGGACTGGACCTTAACTGGACCTTCCCAGCCCCTAGGGACATCTGGACTTCTGTACATCCCGGACATCCTGGGCTTTCTGTTCATGGGCCTGTTCGCCCATGCTTTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCACATATGGGCTGTCGAAGTTGAGACGGCGACGTACCTTCGATGCGGGCGTTGA |
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Protein Sequence
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MILIFASLLLVVHNIIINPNKLLHESLLLRCILTPCHSCMPLPEHLVPIPMHIFHRHRAGLIIKHVKNLTKILRLVNWSTVTNEKEHHIVRVILGLYIFIHPYFTQHINRLHTKPLRYSMGQPNTPSNITKTNGLTHVIKIMSASKGLDLNWTFPAPRDIWTSVHPGHPGLSVHGPVRPCFCFGDADNGGSSTAHIWAVEVETATYLRCGR |
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NCBI Accession
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QBP05525.1
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Location
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1075-1479 |
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Gene Name
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AC3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGAAATGAATGGGGTGTATATCTGGAAGGTCCCAAATCCCCTATATTTCAAGTCCTCAGACCACGACCAAAGGCCATTTTCCATGAACCACGACATCATCACTCTCCAGATCCAGTTCAATCACAACCTCAGGAAGGAACTGAGGATACTGAAGTGTTTTTTGGGCTTAAGAATCTGCATGGCTTTACAACCTCAGACCGGGCATTTCTTAAGAGTCTTTAGGAGTCAGGTTTTAAAGTATTTAGATAATCTAGGAGTCATTAGTATAAATAATGTAGTTAGGGCCTTTAAACATGTATTATACGATGTATCAGAACATGATGTATATTTAGACCAATCATCTTCAATAAAATTCTATATTTATTAA |
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Protein Sequence
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MDSRTGELITAAQEMNGVYIWKVPNPLYFKSSDHDQRPFSMNHDIITLQIQFNHNLRKELRILKCFLGLRICMALQPQTGHFLRVFRSQVLKYLDNLGVISINNVVRAFKHVLYDVSEHDVYLDQSSSIKFYIY |
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NCBI Accession
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QBP05524.1
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Location
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1220-1624 |
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Gene Name
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AC2 |
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Protein Name
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transcriptional activator protein |
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Coding Region
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ATGCAAAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCAGGGGACCATCCGGCGAAGTGTTGATCTCGAGGGTGGTTGCTCTTACTACGTACCATCAGCCTGCCACAATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGAAATGAATGGGGTGTATATCTGGAAGGTCCCAAATCCCCTATATTTCAAGTCCTCAGACCACGACCAAAGGCCATTTTCCATGAACCACGACATCATCACTCTCCAGATCCAGTTCAATCACAACCTCAGGAAGGAACTGAGGATACTGAAGTGTTTTTTGGGCTTAAGAATCTGCATGGCTTTACAACCTCAGACCGGGCATTTCTTAAGAGTCTTTAG |
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Protein Sequence
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MQNSSPSQSHCTQVPIKVQHRLAKQGTIRRSVDLEGGCSYYVPSACHNHGFTHRGTHHCSSGNEWGVYLEGPKSPIFQVLRPRPKAIFHEPRHHHSPDPVQSQPQEGTEDTEVFFGLKNLHGFTTSDRAFLKSL |
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NCBI Accession
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QBP05523.1
|
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Location
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1527-2612 |
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Gene Name
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AC1 |
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Protein Name
|
replication associated protein |
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Coding Region
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ATGCGTCGTAATAACTCCTTCTGTATAAATGCCGAAAATATCTTCCTTACTTATCCCAAATGCCCAATACGCAAAGAGCAAATGCTCGAACTATTTAAAAACATTACCTGTCCTCTTGATAAATTGTTTATCAGAGTATCAAAAGAAAAACACCAAGATTGGTCTCTGCGTATCCAGGGTTTCATCCAATTCAAAGGGAAATTGCGGTTCAGAGAAGACAGACATTTTGAAATCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCCGGGTTTCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAGTGATGGTGCAGCGGAGGCCCTAAATGCAGGTTCAGCGGAAGCTGCTTTAGCAATTATTAGGGAGAAACTCCCGGAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTGGACACCTCCAGTGGAGGTTTATGTTTCCCCCATTTCTTGTTGTTCATTCGATCAGGTGCCGGAGGCCATAGAGGAATGGGCTGCTGAAAATGTGATGGGTACCGCTGCGCGGCCATTGAGATCTAAAAGTATTGTCTTAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCACTGGGTCCACACAATTATCTGTGTGGTCATTTAGACCTTAGTCCAAAGGTCTACAGCAACGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAGAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCCGTTCAAATTAAAGGGGGCATTCCCACTATCTTCCTCTGCAATCCTGGGTCCACTTCCAGCTATAAAGAGTTCTTGGACGAGGACAAGAATTCGGCACTAAGAGCGTGGGCTATAAAGAATGCAAAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCAGGGGACCATCCGGCGAAGTGTTGA |
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Protein Sequence
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MRRNNSFCINAENIFLTYPKCPIRKEQMLELFKNITCPLDKLFIRVSKEKHQDWSLRIQGFIQFKGKLRFREDRHFEIARPNTSSQFHPGFQGAKCRSGVKSYIQKGGEYIDWGEFQIGGRFASGGQQTGSDGAAEALNAGSAEAALAIIREKLPEDFIFQYHNLKNNLDRIWTPPVEVYVSPISCCSFDQVPEAIEEWAAENVMGTAARPLRSKSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLEHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGSTSSYKEFLDEDKNSALRAWAIKNAKFITLTEPLYSGTNQGPTQASQAGDHPAKC |
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NCBI Accession
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QBP05526.1
|
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Location
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2198-2584 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGCCGAAAATATCTTCCTTACTTATCCCAAATGCCCAATACGCAAAGAGCAAATGCTCGAACTATTTAAAAACATTACCTGTCCTCTTGATAAATTGTTTATCAGAGTATCAAAAGAAAAACACCAAGATTGGTCTCTGCGTATCCAGGGTTTCATCCAATTCAAAGGGAAATTGCGGTTCAGAGAAGACAGACATTTTGAAATCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCCGGGTTTCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAGTGATGGTGCAGCGGAGGCCCTAA |
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Protein Sequence
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MPKISSLLIPNAQYAKSKCSNYLKTLPVLLINCLSEYQKKNTKIGLCVSRVSSNSKGNCGSEKTDILKSLALIPQASSTPGFRELSAGQVSSPTSRRAESTSTGVSFRSVGDLLVEVNRQVVMVQRRP |