Papaya severe leaf curl virus 1
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTCTAGTGGGCCCCACAACGCACGTGCTGACAAGGACAAACGGACCAATGAAATTGGCTCCTCGTTGCTTAATTATTTAATGGTCCCTCCTATAAACTTAGTGCGCAAGTTGTGCACGCTTACCAATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTCGATGTATGCTAGCAGTTAAATATATGCAGCTCGTAGACAATACGTATTCTCCAGAGACTTTGGGGTACGATTTAATTAGGGATTTAATATCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGTCTAGACATGATGTCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTATTCGTGGAACTGGGTTGACTCCCCGAGTCGGCAAAAGGTTTTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCCGTTGATAAGCCCCAAGATTTTGGTGAGGTTTTTAATATGTTTGATAATGAGCCCAGTACGGGGACAGTGAAGAAGGTGCATCGTGATAGGTACCAGGTGCTCAGGAAGTGGCACGCCACTGTGACAGGCGGTCAATATGCATGGAAGGAGCAGGTTTTCGTGAAGAAGTTAATTAGGGTTACTAATTTTGTTGTGTATAACCACAAAGAGGCTGGCAAGTATGAGAACCATACTGAGAATGCATTGATGTTGTATATGGCATGTACCCCTGCCTCTAACCCTGTGTATGCTACCTTGAAGATACGGACCTATTTCTATGACTCACTAACAAATTAATAAATATAGAATTTTATTATGTTTGATGGTCCTACATACATTGTTTGTGCTAATACATTCCATAATACATGATCAACTGCTCTAAGTACATTATTTATACTAATGACAGCTAAATTATCTAAATACTGCAGAACTTGGGTCCTAAAGACCCTTAAGAAACGACCAGTCCGAGGTTGTAAGGTCGTCCAGATTCGGAAGGCTAGGAAACAATTGTGTATCCTCAGCTCTTTCCTGAGGTTGTGATTGAATTGTATCTGTACGGTTATGATGTCGTCCTTCATTAGGAATGGCCGGTTGTCGTGCTCTGTTATCTTGAAATATAGGGGATTTGTTATTTCCCAGATATACACCCCATTCTCGGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTGGCAGCGTAGTGAGATGAAATAAGAGCAGCCGCAGTGTAGGTCAACGCTCCGACGCCTGATCCCCTTCTTGGCTAGCCTGTGCTGGACCTTGATTGGTACCTGAGTACAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTTATAGCCCAATTTCTGAGTGCCGAATTCTTCTCCTCATCCAAGTATTCTTTATAGCTGGAATTTGGTCCAGAATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCACTCGTCATAAATGCATACCTTAGGACTAAGGTCTAGATGACCACACAAATAATTGTGTGGACCCAGTGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTAAGACAATACTTTTAGATCTCAATGGCCGCGCAGCGGTACCCATCACATTTTCAGCAGCCCATTCCTCTAGGCCTCCGGCACCTTGATCGAATGAAGAAGAAGAAATGGGGGAAACATAAACCTCCACTGGAGGTGTCCAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAATCTTCTGGGAGCTTTTCCCTTATAATTGCTAATGCAGCTTCCGCTGAACCTGCATTTAAGGCCTCTGCTGCACCATCATTACCTGTCTGTTGACCTCCACTAGCAAATCGCCCACCGATCTGAAACTCACCCCAGTCGATGTACTCTCCGCCCTTCTGGATGTAGGACTTGACACCTGACCTGCACTTAGCTCCCTGGAAATTTGGGTGGAACTGGCTTGAGGTATTAGGGCGAGCGACATCGAAATGTCTTGGGTTTCTGAACCGGGATTTCCCTTTGAATTGGATGAGCGCCTGGATACGCAAGCTCCCATCTTGGTGTTTTTCCTGTGACACTCTGATAAATAATTTATCAGAAGGACAATTTAACGATTTCAGGATTTCGAGCATTTGTTCTTTGGGTATTGGGCATTTTGGATAAGTAGGGAAGATATTTTTGGCTTTAACTTGGAATTGATGAGTACGTGGCATATTGAATTGGGTGCTCTCCAAAACTCTACGGAATGGGGAGCTTTGGGTGCCTATTTATAGCGAGCTCCCAAATGGCATTATCGTAATTTAGGAGAAATAATTCAAAATCTTCACGCTCCTAAAAGCGGCCATCCGTATAATATT
Gene Information
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NCBI Accession
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QBP05514.1
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Location
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146-502 |
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Gene Name
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AV2 |
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Protein Name
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pre-coat |
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Coding Region
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ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTCGATGTATGCTAGCAGTTAAATATATGCAGCTCGTAGACAATACGTATTCTCCAGAGACTTTGGGGTACGATTTAATTAGGGATTTAATATCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG |
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Protein Sequence
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MWDPLVNEFPETVHGFRCMLAVKYMQLVDNTYSPETLGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTSPSQLRQPICEPCCCPHCPRHQSKGMGEQAHEQDAKDVQDVQKPRCS |
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NCBI Accession
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QBP05520.1
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Location
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284-574 |
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Gene Name
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AC5 |
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Protein Name
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AC5 |
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Coding Region
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ATGACTTTACCAATGTGCTGGACATCATGTCTAGACTCAAATGACTGGACCTTACATGGGCCTTCACATCCTCTAGGAACATCTGGGCTTCTGTACATCCTGTACATCCTTGGCATCCTGTTCATGGGCCTGTTCGCCCATGCCCTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCGCATATGGGCTGTCGAAGTTGAGACGGCGACGTACCTTCGAAGCGGGCGTGGAAATGATTATATCTGCTGGTCGCTTCGACATAATTCCTGGCCCTTATTACTGA |
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Protein Sequence
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MTLPMCWTSCLDSNDWTLHGPSHPLGTSGLLYILYILGILFMGLFAHALALVTRTMGAAARLAYGLSKLRRRRTFEAGVEMIISAGRFDIIPGPYY |
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NCBI Accession
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QBP05515.1
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Location
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306-1076 |
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Gene Name
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AV1 |
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Protein Name
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coat protein |
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Coding Region
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ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGTCTAGACATGATGTCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTATTCGTGGAACTGGGTTGACTCCCCGAGTCGGCAAAAGGTTTTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCCGTTGATAAGCCCCAAGATTTTGGTGAGGTTTTTAATATGTTTGATAATGAGCCCAGTACGGGGACAGTGAAGAAGGTGCATCGTGATAGGTACCAGGTGCTCAGGAAGTGGCACGCCACTGTGACAGGCGGTCAATATGCATGGAAGGAGCAGGTTTTCGTGAAGAAGTTAATTAGGGTTACTAATTTTGTTGTGTATAACCACAAAGAGGCTGGCAAGTATGAGAACCATACTGAGAATGCATTGATGTTGTATATGGCATGTACCCCTGCCTCTAACCCTGTGTATGCTACCTTGAAGATACGGACCTATTTCTATGACTCACTAACAAATTAA |
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Protein Sequence
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MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRMPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVIRGTGLTPRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTGTVKKVHRDRYQVLRKWHATVTGGQYAWKEQVFVKKLIRVTNFVVYNHKEAGKYENHTENALMLYMACTPASNPVYATLKIRTYFYDSLTN |
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NCBI Accession
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QBP05518.1
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Location
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1073-1477 |
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Gene Name
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AC3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCCGAGAATGGGGTGTATATCTGGGAAATAACAAATCCCCTATATTTCAAGATAACAGAGCACGACAACCGGCCATTCCTAATGAAGGACGACATCATAACCGTACAGATACAATTCAATCACAACCTCAGGAAAGAGCTGAGGATACACAATTGTTTCCTAGCCTTCCGAATCTGGACGACCTTACAACCTCGGACTGGTCGTTTCTTAAGGGTCTTTAGGACCCAAGTTCTGCAGTATTTAGATAATTTAGCTGTCATTAGTATAAATAATGTACTTAGAGCAGTTGATCATGTATTATGGAATGTATTAGCACAAACAATGTATGTAGGACCATCAAACATAATAAAATTCTATATTTATTAA |
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Protein Sequence
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MDSRTGELITAAQAENGVYIWEITNPLYFKITEHDNRPFLMKDDIITVQIQFNHNLRKELRIHNCFLAFRIWTTLQPRTGRFLRVFRTQVLQYLDNLAVISINNVLRAVDHVLWNVLAQTMYVGPSNIIKFYIY |
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NCBI Accession
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QBP05517.1
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Location
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1218-1622 |
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Gene Name
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AC2 |
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Protein Name
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transcriptional activator protein |
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Coding Region
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ATGCGACCTTCATCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAGGTCCAGCACAGGCTAGCCAAGAAGGGGATCAGGCGTCGGAGCGTTGACCTACACTGCGGCTGCTCTTATTTCATCTCACTACGCTGCCACAATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCCGAGAATGGGGTGTATATCTGGGAAATAACAAATCCCCTATATTTCAAGATAACAGAGCACGACAACCGGCCATTCCTAATGAAGGACGACATCATAACCGTACAGATACAATTCAATCACAACCTCAGGAAAGAGCTGAGGATACACAATTGTTTCCTAGCCTTCCGAATCTGGACGACCTTACAACCTCGGACTGGTCGTTTCTTAAGGGTCTTTAG |
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Protein Sequence
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MRPSSPSKAHCTQVPIKVQHRLAKKGIRRRSVDLHCGCSYFISLRCHNHGFTHRGTHHCSSGREWGVYLGNNKSPIFQDNRARQPAIPNEGRHHNRTDTIQSQPQERAEDTQLFPSLPNLDDLTTSDWSFLKGL |
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NCBI Accession
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QBP05516.1
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Location
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1525-2610 |
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Gene Name
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AC1 |
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Protein Name
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replication associated protein |
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Coding Region
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ATGCCACGTACTCATCAATTCCAAGTTAAAGCCAAAAATATCTTCCCTACTTATCCAAAATGCCCAATACCCAAAGAACAAATGCTCGAAATCCTGAAATCGTTAAATTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAGGAAAAACACCAAGATGGGAGCTTGCGTATCCAGGCGCTCATCCAATTCAAAGGGAAATCCCGGTTCAGAAACCCAAGACATTTCGATGTCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCAAATTTCCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAATGATGGTGCAGCAGAGGCCTTAAATGCAGGTTCAGCGGAAGCTGCATTAGCAATTATAAGGGAAAAGCTCCCAGAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTGGACACCTCCAGTGGAGGTTTATGTTTCCCCCATTTCTTCTTCTTCATTCGATCAAGGTGCCGGAGGCCTAGAGGAATGGGCTGCTGAAAATGTGATGGGTACCGCTGCGCGGCCATTGAGATCTAAAAGTATTGTCTTAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCACTGGGTCCACACAATTATTTGTGTGGTCATCTAGACCTTAGTCCTAAGGTATGCATTTATGACGAGTGGTACAACGTCATTGATGACGTCGACCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGTATTCCCACTATCTTCCTCTGCAATTCTGGACCAAATTCCAGCTATAAAGAATACTTGGATGAGGAGAAGAATTCGGCACTCAGAAATTGGGCTATAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAGGTCCAGCACAGGCTAGCCAAGAAGGGGATCAGGCGTCGGAGCGTTGA |
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Protein Sequence
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MPRTHQFQVKAKNIFPTYPKCPIPKEQMLEILKSLNCPSDKLFIRVSQEKHQDGSLRIQALIQFKGKSRFRNPRHFDVARPNTSSQFHPNFQGAKCRSGVKSYIQKGGEYIDWGEFQIGGRFASGGQQTGNDGAAEALNAGSAEAALAIIREKLPEDFIFQYHNLKNNLDRIWTPPVEVYVSPISSSSFDQGAGGLEEWAAENVMGTAARPLRSKSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVCIYDEWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNSGPNSSYKEYLDEEKNSALRNWAIKNATFITLEGPLYSGTNQGPAQASQEGDQASER |
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NCBI Accession
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QBP05519.1
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Location
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2196-2453 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGGGAGCTTGCGTATCCAGGCGCTCATCCAATTCAAAGGGAAATCCCGGTTCAGAAACCCAAGACATTTCGATGTCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCAAATTTCCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAATGATGGTGCAGCAGAGGCCTTAA |
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Protein Sequence
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MGACVSRRSSNSKGNPGSETQDISMSLALIPQASSTQISRELSAGQVSSPTSRRAESTSTGVSFRSVGDLLVEVNRQVMMVQQRP |