Papaya severe leaf curl virus 1


Basic Information

Genus Begomovirus
Isolate India
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

MH988457
ACCGGATGGCCGCGATTTTTTTCTAGTGGGCCCCACAACGCACGTGCTGACAAGGACAAACGGACCAATGAAATTGGCTCCTCGTTGCTTAATTATTTAATGGTCCCTCCTATAAACTTAGTGCGCAAGTTGTGCACGCTTACCAATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTCGATGTATGCTAGCAGTTAAATATATGCAGCTCGTAGACAATACGTATTCTCCAGAGACTTTGGGGTACGATTTAATTAGGGATTTAATATCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGTCTAGACATGATGTCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTATTCGTGGAACTGGGTTGACTCCCCGAGTCGGCAAAAGGTTTTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCCGTTGATAAGCCCCAAGATTTTGGTGAGGTTTTTAATATGTTTGATAATGAGCCCAGTACGGGGACAGTGAAGAAGGTGCATCGTGATAGGTACCAGGTGCTCAGGAAGTGGCACGCCACTGTGACAGGCGGTCAATATGCATGGAAGGAGCAGGTTTTCGTGAAGAAGTTAATTAGGGTTACTAATTTTGTTGTGTATAACCACAAAGAGGCTGGCAAGTATGAGAACCATACTGAGAATGCATTGATGTTGTATATGGCATGTACCCCTGCCTCTAACCCTGTGTATGCTACCTTGAAGATACGGACCTATTTCTATGACTCACTAACAAATTAATAAATATAGAATTTTATTATGTTTGATGGTCCTACATACATTGTTTGTGCTAATACATTCCATAATACATGATCAACTGCTCTAAGTACATTATTTATACTAATGACAGCTAAATTATCTAAATACTGCAGAACTTGGGTCCTAAAGACCCTTAAGAAACGACCAGTCCGAGGTTGTAAGGTCGTCCAGATTCGGAAGGCTAGGAAACAATTGTGTATCCTCAGCTCTTTCCTGAGGTTGTGATTGAATTGTATCTGTACGGTTATGATGTCGTCCTTCATTAGGAATGGCCGGTTGTCGTGCTCTGTTATCTTGAAATATAGGGGATTTGTTATTTCCCAGATATACACCCCATTCTCGGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTGGCAGCGTAGTGAGATGAAATAAGAGCAGCCGCAGTGTAGGTCAACGCTCCGACGCCTGATCCCCTTCTTGGCTAGCCTGTGCTGGACCTTGATTGGTACCTGAGTACAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTTATAGCCCAATTTCTGAGTGCCGAATTCTTCTCCTCATCCAAGTATTCTTTATAGCTGGAATTTGGTCCAGAATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCACTCGTCATAAATGCATACCTTAGGACTAAGGTCTAGATGACCACACAAATAATTGTGTGGACCCAGTGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTAAGACAATACTTTTAGATCTCAATGGCCGCGCAGCGGTACCCATCACATTTTCAGCAGCCCATTCCTCTAGGCCTCCGGCACCTTGATCGAATGAAGAAGAAGAAATGGGGGAAACATAAACCTCCACTGGAGGTGTCCAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAATCTTCTGGGAGCTTTTCCCTTATAATTGCTAATGCAGCTTCCGCTGAACCTGCATTTAAGGCCTCTGCTGCACCATCATTACCTGTCTGTTGACCTCCACTAGCAAATCGCCCACCGATCTGAAACTCACCCCAGTCGATGTACTCTCCGCCCTTCTGGATGTAGGACTTGACACCTGACCTGCACTTAGCTCCCTGGAAATTTGGGTGGAACTGGCTTGAGGTATTAGGGCGAGCGACATCGAAATGTCTTGGGTTTCTGAACCGGGATTTCCCTTTGAATTGGATGAGCGCCTGGATACGCAAGCTCCCATCTTGGTGTTTTTCCTGTGACACTCTGATAAATAATTTATCAGAAGGACAATTTAACGATTTCAGGATTTCGAGCATTTGTTCTTTGGGTATTGGGCATTTTGGATAAGTAGGGAAGATATTTTTGGCTTTAACTTGGAATTGATGAGTACGTGGCATATTGAATTGGGTGCTCTCCAAAACTCTACGGAATGGGGAGCTTTGGGTGCCTATTTATAGCGAGCTCCCAAATGGCATTATCGTAATTTAGGAGAAATAATTCAAAATCTTCACGCTCCTAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession QBP05514.1
Location 146-502
Gene Name AV2
Protein Name pre-coat
Coding Region ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTCGATGTATGCTAGCAGTTAAATATATGCAGCTCGTAGACAATACGTATTCTCCAGAGACTTTGGGGTACGATTTAATTAGGGATTTAATATCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYMQLVDNTYSPETLGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTSPSQLRQPICEPCCCPHCPRHQSKGMGEQAHEQDAKDVQDVQKPRCS

NCBI Accession QBP05520.1
Location 284-574
Gene Name AC5
Protein Name AC5
Coding Region ATGACTTTACCAATGTGCTGGACATCATGTCTAGACTCAAATGACTGGACCTTACATGGGCCTTCACATCCTCTAGGAACATCTGGGCTTCTGTACATCCTGTACATCCTTGGCATCCTGTTCATGGGCCTGTTCGCCCATGCCCTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCGCATATGGGCTGTCGAAGTTGAGACGGCGACGTACCTTCGAAGCGGGCGTGGAAATGATTATATCTGCTGGTCGCTTCGACATAATTCCTGGCCCTTATTACTGA
Protein Sequence MTLPMCWTSCLDSNDWTLHGPSHPLGTSGLLYILYILGILFMGLFAHALALVTRTMGAAARLAYGLSKLRRRRTFEAGVEMIISAGRFDIIPGPYY

NCBI Accession QBP05515.1
Location 306-1076
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGTCTAGACATGATGTCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTATTCGTGGAACTGGGTTGACTCCCCGAGTCGGCAAAAGGTTTTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCCGTTGATAAGCCCCAAGATTTTGGTGAGGTTTTTAATATGTTTGATAATGAGCCCAGTACGGGGACAGTGAAGAAGGTGCATCGTGATAGGTACCAGGTGCTCAGGAAGTGGCACGCCACTGTGACAGGCGGTCAATATGCATGGAAGGAGCAGGTTTTCGTGAAGAAGTTAATTAGGGTTACTAATTTTGTTGTGTATAACCACAAAGAGGCTGGCAAGTATGAGAACCATACTGAGAATGCATTGATGTTGTATATGGCATGTACCCCTGCCTCTAACCCTGTGTATGCTACCTTGAAGATACGGACCTATTTCTATGACTCACTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRMPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVIRGTGLTPRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTGTVKKVHRDRYQVLRKWHATVTGGQYAWKEQVFVKKLIRVTNFVVYNHKEAGKYENHTENALMLYMACTPASNPVYATLKIRTYFYDSLTN

NCBI Accession QBP05518.1
Location 1073-1477
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCCGAGAATGGGGTGTATATCTGGGAAATAACAAATCCCCTATATTTCAAGATAACAGAGCACGACAACCGGCCATTCCTAATGAAGGACGACATCATAACCGTACAGATACAATTCAATCACAACCTCAGGAAAGAGCTGAGGATACACAATTGTTTCCTAGCCTTCCGAATCTGGACGACCTTACAACCTCGGACTGGTCGTTTCTTAAGGGTCTTTAGGACCCAAGTTCTGCAGTATTTAGATAATTTAGCTGTCATTAGTATAAATAATGTACTTAGAGCAGTTGATCATGTATTATGGAATGTATTAGCACAAACAATGTATGTAGGACCATCAAACATAATAAAATTCTATATTTATTAA
Protein Sequence MDSRTGELITAAQAENGVYIWEITNPLYFKITEHDNRPFLMKDDIITVQIQFNHNLRKELRIHNCFLAFRIWTTLQPRTGRFLRVFRTQVLQYLDNLAVISINNVLRAVDHVLWNVLAQTMYVGPSNIIKFYIY

NCBI Accession QBP05517.1
Location 1218-1622
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCGACCTTCATCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAGGTCCAGCACAGGCTAGCCAAGAAGGGGATCAGGCGTCGGAGCGTTGACCTACACTGCGGCTGCTCTTATTTCATCTCACTACGCTGCCACAATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCCGAGAATGGGGTGTATATCTGGGAAATAACAAATCCCCTATATTTCAAGATAACAGAGCACGACAACCGGCCATTCCTAATGAAGGACGACATCATAACCGTACAGATACAATTCAATCACAACCTCAGGAAAGAGCTGAGGATACACAATTGTTTCCTAGCCTTCCGAATCTGGACGACCTTACAACCTCGGACTGGTCGTTTCTTAAGGGTCTTTAG
Protein Sequence MRPSSPSKAHCTQVPIKVQHRLAKKGIRRRSVDLHCGCSYFISLRCHNHGFTHRGTHHCSSGREWGVYLGNNKSPIFQDNRARQPAIPNEGRHHNRTDTIQSQPQERAEDTQLFPSLPNLDDLTTSDWSFLKGL

NCBI Accession QBP05516.1
Location 1525-2610
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGCCACGTACTCATCAATTCCAAGTTAAAGCCAAAAATATCTTCCCTACTTATCCAAAATGCCCAATACCCAAAGAACAAATGCTCGAAATCCTGAAATCGTTAAATTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAGGAAAAACACCAAGATGGGAGCTTGCGTATCCAGGCGCTCATCCAATTCAAAGGGAAATCCCGGTTCAGAAACCCAAGACATTTCGATGTCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCAAATTTCCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAATGATGGTGCAGCAGAGGCCTTAAATGCAGGTTCAGCGGAAGCTGCATTAGCAATTATAAGGGAAAAGCTCCCAGAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTGGACACCTCCAGTGGAGGTTTATGTTTCCCCCATTTCTTCTTCTTCATTCGATCAAGGTGCCGGAGGCCTAGAGGAATGGGCTGCTGAAAATGTGATGGGTACCGCTGCGCGGCCATTGAGATCTAAAAGTATTGTCTTAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCACTGGGTCCACACAATTATTTGTGTGGTCATCTAGACCTTAGTCCTAAGGTATGCATTTATGACGAGTGGTACAACGTCATTGATGACGTCGACCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGTATTCCCACTATCTTCCTCTGCAATTCTGGACCAAATTCCAGCTATAAAGAATACTTGGATGAGGAGAAGAATTCGGCACTCAGAAATTGGGCTATAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAGGTCCAGCACAGGCTAGCCAAGAAGGGGATCAGGCGTCGGAGCGTTGA
Protein Sequence MPRTHQFQVKAKNIFPTYPKCPIPKEQMLEILKSLNCPSDKLFIRVSQEKHQDGSLRIQALIQFKGKSRFRNPRHFDVARPNTSSQFHPNFQGAKCRSGVKSYIQKGGEYIDWGEFQIGGRFASGGQQTGNDGAAEALNAGSAEAALAIIREKLPEDFIFQYHNLKNNLDRIWTPPVEVYVSPISSSSFDQGAGGLEEWAAENVMGTAARPLRSKSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVCIYDEWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNSGPNSSYKEYLDEEKNSALRNWAIKNATFITLEGPLYSGTNQGPAQASQEGDQASER

NCBI Accession QBP05519.1
Location 2196-2453
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGAGCTTGCGTATCCAGGCGCTCATCCAATTCAAAGGGAAATCCCGGTTCAGAAACCCAAGACATTTCGATGTCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCAAATTTCCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAATGATGGTGCAGCAGAGGCCTTAA
Protein Sequence MGACVSRRSSNSKGNPGSETQDISMSLALIPQASSTQISRELSAGQVSSPTSRRAESTSTGVSFRSVGDLLVEVNRQVMMVQQRP

References More References in PubMed

1

Identification of Cotton leaf curl Gezira virus in Papaya in Oman.

Khan AJ, et al.  Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN.

PMID: 30727467

2

First Report of Tomato leaf curl Albatinah virus (ToLCABV) and its Associated Betasatellite Infecting Papaya in Oman.

Ammara UE, et al.  Plant Dis. 2015 Mar;99(3):421. doi: 10.1094/PDIS-09-14-0912-PDN.

PMID: 30699712

3

Characterization, phylogeny and recombination analysis of Pedilanthus leaf curl virus-Petunia isolate and its associated betasatellite.

Shakir S, et al.  Virol J. 2018 Aug 31;15(1):134. doi: 10.1186/s12985-018-1047-y.

PMID: 30165872

4

Leaf Curl Disease of Carica papaya from India May Be Caused by a Bipartite Geminivirus.

Saxena S, et al.  Plant Dis. 1998 Jan;82(1):126. doi: 10.1094/PDIS.1998.82.1.126A.

PMID: 30857046

5

First Report of Tomato leaf curl Palampur virus on Bitter Gourd in Pakistan.

Ali I, et al.  Plant Dis. 2010 Feb;94(2):276. doi: 10.1094/PDIS-94-2-0276A.

PMID: 30754274

6

An anomalous detection of Tomato yellow leaf curl virus in tomato in New York State.

Perry KL.  Plant Dis. 2021 Apr 28. doi: 10.1094/PDIS-02-21-0356-PDN. Online ahead of print.

PMID: 33908793

7

Molecular characterization and infectivity of a Tomato leaf curl New Delhi virus variant associated with newly emerging yellow mosaic disease of eggplant in India.

Pratap D, et al.  Virol J. 2011 Jun 16;8:305. doi: 10.1186/1743-422X-8-305.

PMID: 21676270

8

Nucleotide sequence and intergeminiviral homologies of the DNA-A of papaya leaf curl geminivirus from India.

Saxena S, et al.  Biochem Mol Biol Int. 1998 Jun;45(1):101-13. doi: 10.1080/15216549800202472.

PMID: 9635134

9

Identification of an emerging cucumber virus in Taiwan using Oxford nanopore sequencing technology.

Dong ZX, et al.  Plant Methods. 2022 Dec 22;18(1):143. doi: 10.1186/s13007-022-00976-x.

PMID: 36550551

10

First report of mosaic disease associated with zucchini tigre mosaic virus in wax gourd (Benincasa hispida) in Taiwan.

Chen YK, et al.  Plant Dis. 2022 May 12. doi: 10.1094/PDIS-12-21-2827-PDN. Online ahead of print.

PMID: 35549322