Papaya severe leaf curl virus 1
Basic Information
| Genus | Begomovirus |
|---|---|
| Isolate | India |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
MH988457
ACCGGATGGCCGCGATTTTTTTCTAGTGGGCCCCACAACGCACGTGCTGACAAGGACAAACGGACCAATGAAATTGGCTCCTCGTTGCTTAATTATTTAATGGTCCCTCCTATAAACTTAGTGCGCAAGTTGTGCACGCTTACCAATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTCGATGTATGCTAGCAGTTAAATATATGCAGCTCGTAGACAATACGTATTCTCCAGAGACTTTGGGGTACGATTTAATTAGGGATTTAATATCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGTCTAGACATGATGTCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTATTCGTGGAACTGGGTTGACTCCCCGAGTCGGCAAAAGGTTTTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCCGTTGATAAGCCCCAAGATTTTGGTGAGGTTTTTAATATGTTTGATAATGAGCCCAGTACGGGGACAGTGAAGAAGGTGCATCGTGATAGGTACCAGGTGCTCAGGAAGTGGCACGCCACTGTGACAGGCGGTCAATATGCATGGAAGGAGCAGGTTTTCGTGAAGAAGTTAATTAGGGTTACTAATTTTGTTGTGTATAACCACAAAGAGGCTGGCAAGTATGAGAACCATACTGAGAATGCATTGATGTTGTATATGGCATGTACCCCTGCCTCTAACCCTGTGTATGCTACCTTGAAGATACGGACCTATTTCTATGACTCACTAACAAATTAATAAATATAGAATTTTATTATGTTTGATGGTCCTACATACATTGTTTGTGCTAATACATTCCATAATACATGATCAACTGCTCTAAGTACATTATTTATACTAATGACAGCTAAATTATCTAAATACTGCAGAACTTGGGTCCTAAAGACCCTTAAGAAACGACCAGTCCGAGGTTGTAAGGTCGTCCAGATTCGGAAGGCTAGGAAACAATTGTGTATCCTCAGCTCTTTCCTGAGGTTGTGATTGAATTGTATCTGTACGGTTATGATGTCGTCCTTCATTAGGAATGGCCGGTTGTCGTGCTCTGTTATCTTGAAATATAGGGGATTTGTTATTTCCCAGATATACACCCCATTCTCGGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTGGCAGCGTAGTGAGATGAAATAAGAGCAGCCGCAGTGTAGGTCAACGCTCCGACGCCTGATCCCCTTCTTGGCTAGCCTGTGCTGGACCTTGATTGGTACCTGAGTACAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTTATAGCCCAATTTCTGAGTGCCGAATTCTTCTCCTCATCCAAGTATTCTTTATAGCTGGAATTTGGTCCAGAATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCACTCGTCATAAATGCATACCTTAGGACTAAGGTCTAGATGACCACACAAATAATTGTGTGGACCCAGTGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTAAGACAATACTTTTAGATCTCAATGGCCGCGCAGCGGTACCCATCACATTTTCAGCAGCCCATTCCTCTAGGCCTCCGGCACCTTGATCGAATGAAGAAGAAGAAATGGGGGAAACATAAACCTCCACTGGAGGTGTCCAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAATCTTCTGGGAGCTTTTCCCTTATAATTGCTAATGCAGCTTCCGCTGAACCTGCATTTAAGGCCTCTGCTGCACCATCATTACCTGTCTGTTGACCTCCACTAGCAAATCGCCCACCGATCTGAAACTCACCCCAGTCGATGTACTCTCCGCCCTTCTGGATGTAGGACTTGACACCTGACCTGCACTTAGCTCCCTGGAAATTTGGGTGGAACTGGCTTGAGGTATTAGGGCGAGCGACATCGAAATGTCTTGGGTTTCTGAACCGGGATTTCCCTTTGAATTGGATGAGCGCCTGGATACGCAAGCTCCCATCTTGGTGTTTTTCCTGTGACACTCTGATAAATAATTTATCAGAAGGACAATTTAACGATTTCAGGATTTCGAGCATTTGTTCTTTGGGTATTGGGCATTTTGGATAAGTAGGGAAGATATTTTTGGCTTTAACTTGGAATTGATGAGTACGTGGCATATTGAATTGGGTGCTCTCCAAAACTCTACGGAATGGGGAGCTTTGGGTGCCTATTTATAGCGAGCTCCCAAATGGCATTATCGTAATTTAGGAGAAATAATTCAAAATCTTCACGCTCCTAAAAGCGGCCATCCGTATAATATT
Gene Information
| NCBI Accession | QBP05514.1 |
|---|---|
| Location | 146-502 |
| Gene Name | AV2 |
| Protein Name | pre-coat |
| Coding Region | ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTCGATGTATGCTAGCAGTTAAATATATGCAGCTCGTAGACAATACGTATTCTCCAGAGACTTTGGGGTACGATTTAATTAGGGATTTAATATCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG |
| Protein Sequence | MWDPLVNEFPETVHGFRCMLAVKYMQLVDNTYSPETLGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTSPSQLRQPICEPCCCPHCPRHQSKGMGEQAHEQDAKDVQDVQKPRCS |
| NCBI Accession | QBP05520.1 |
|---|---|
| Location | 284-574 |
| Gene Name | AC5 |
| Protein Name | AC5 |
| Coding Region | ATGACTTTACCAATGTGCTGGACATCATGTCTAGACTCAAATGACTGGACCTTACATGGGCCTTCACATCCTCTAGGAACATCTGGGCTTCTGTACATCCTGTACATCCTTGGCATCCTGTTCATGGGCCTGTTCGCCCATGCCCTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCGCATATGGGCTGTCGAAGTTGAGACGGCGACGTACCTTCGAAGCGGGCGTGGAAATGATTATATCTGCTGGTCGCTTCGACATAATTCCTGGCCCTTATTACTGA |
| Protein Sequence | MTLPMCWTSCLDSNDWTLHGPSHPLGTSGLLYILYILGILFMGLFAHALALVTRTMGAAARLAYGLSKLRRRRTFEAGVEMIISAGRFDIIPGPYY |
| NCBI Accession | QBP05515.1 |
|---|---|
| Location | 306-1076 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGTCTAGACATGATGTCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTATTCGTGGAACTGGGTTGACTCCCCGAGTCGGCAAAAGGTTTTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCCGTTGATAAGCCCCAAGATTTTGGTGAGGTTTTTAATATGTTTGATAATGAGCCCAGTACGGGGACAGTGAAGAAGGTGCATCGTGATAGGTACCAGGTGCTCAGGAAGTGGCACGCCACTGTGACAGGCGGTCAATATGCATGGAAGGAGCAGGTTTTCGTGAAGAAGTTAATTAGGGTTACTAATTTTGTTGTGTATAACCACAAAGAGGCTGGCAAGTATGAGAACCATACTGAGAATGCATTGATGTTGTATATGGCATGTACCCCTGCCTCTAACCCTGTGTATGCTACCTTGAAGATACGGACCTATTTCTATGACTCACTAACAAATTAA |
| Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRMPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVIRGTGLTPRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTGTVKKVHRDRYQVLRKWHATVTGGQYAWKEQVFVKKLIRVTNFVVYNHKEAGKYENHTENALMLYMACTPASNPVYATLKIRTYFYDSLTN |
| NCBI Accession | QBP05518.1 |
|---|---|
| Location | 1073-1477 |
| Gene Name | AC3 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCCGAGAATGGGGTGTATATCTGGGAAATAACAAATCCCCTATATTTCAAGATAACAGAGCACGACAACCGGCCATTCCTAATGAAGGACGACATCATAACCGTACAGATACAATTCAATCACAACCTCAGGAAAGAGCTGAGGATACACAATTGTTTCCTAGCCTTCCGAATCTGGACGACCTTACAACCTCGGACTGGTCGTTTCTTAAGGGTCTTTAGGACCCAAGTTCTGCAGTATTTAGATAATTTAGCTGTCATTAGTATAAATAATGTACTTAGAGCAGTTGATCATGTATTATGGAATGTATTAGCACAAACAATGTATGTAGGACCATCAAACATAATAAAATTCTATATTTATTAA |
| Protein Sequence | MDSRTGELITAAQAENGVYIWEITNPLYFKITEHDNRPFLMKDDIITVQIQFNHNLRKELRIHNCFLAFRIWTTLQPRTGRFLRVFRTQVLQYLDNLAVISINNVLRAVDHVLWNVLAQTMYVGPSNIIKFYIY |
| NCBI Accession | QBP05517.1 |
|---|---|
| Location | 1218-1622 |
| Gene Name | AC2 |
| Protein Name | transcriptional activator protein |
| Coding Region | ATGCGACCTTCATCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAGGTCCAGCACAGGCTAGCCAAGAAGGGGATCAGGCGTCGGAGCGTTGACCTACACTGCGGCTGCTCTTATTTCATCTCACTACGCTGCCACAATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCCGAGAATGGGGTGTATATCTGGGAAATAACAAATCCCCTATATTTCAAGATAACAGAGCACGACAACCGGCCATTCCTAATGAAGGACGACATCATAACCGTACAGATACAATTCAATCACAACCTCAGGAAAGAGCTGAGGATACACAATTGTTTCCTAGCCTTCCGAATCTGGACGACCTTACAACCTCGGACTGGTCGTTTCTTAAGGGTCTTTAG |
| Protein Sequence | MRPSSPSKAHCTQVPIKVQHRLAKKGIRRRSVDLHCGCSYFISLRCHNHGFTHRGTHHCSSGREWGVYLGNNKSPIFQDNRARQPAIPNEGRHHNRTDTIQSQPQERAEDTQLFPSLPNLDDLTTSDWSFLKGL |
| NCBI Accession | QBP05516.1 |
|---|---|
| Location | 1525-2610 |
| Gene Name | AC1 |
| Protein Name | replication associated protein |
| Coding Region | ATGCCACGTACTCATCAATTCCAAGTTAAAGCCAAAAATATCTTCCCTACTTATCCAAAATGCCCAATACCCAAAGAACAAATGCTCGAAATCCTGAAATCGTTAAATTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAGGAAAAACACCAAGATGGGAGCTTGCGTATCCAGGCGCTCATCCAATTCAAAGGGAAATCCCGGTTCAGAAACCCAAGACATTTCGATGTCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCAAATTTCCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAATGATGGTGCAGCAGAGGCCTTAAATGCAGGTTCAGCGGAAGCTGCATTAGCAATTATAAGGGAAAAGCTCCCAGAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTGGACACCTCCAGTGGAGGTTTATGTTTCCCCCATTTCTTCTTCTTCATTCGATCAAGGTGCCGGAGGCCTAGAGGAATGGGCTGCTGAAAATGTGATGGGTACCGCTGCGCGGCCATTGAGATCTAAAAGTATTGTCTTAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCACTGGGTCCACACAATTATTTGTGTGGTCATCTAGACCTTAGTCCTAAGGTATGCATTTATGACGAGTGGTACAACGTCATTGATGACGTCGACCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGTATTCCCACTATCTTCCTCTGCAATTCTGGACCAAATTCCAGCTATAAAGAATACTTGGATGAGGAGAAGAATTCGGCACTCAGAAATTGGGCTATAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAGGTCCAGCACAGGCTAGCCAAGAAGGGGATCAGGCGTCGGAGCGTTGA |
| Protein Sequence | MPRTHQFQVKAKNIFPTYPKCPIPKEQMLEILKSLNCPSDKLFIRVSQEKHQDGSLRIQALIQFKGKSRFRNPRHFDVARPNTSSQFHPNFQGAKCRSGVKSYIQKGGEYIDWGEFQIGGRFASGGQQTGNDGAAEALNAGSAEAALAIIREKLPEDFIFQYHNLKNNLDRIWTPPVEVYVSPISSSSFDQGAGGLEEWAAENVMGTAARPLRSKSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVCIYDEWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNSGPNSSYKEYLDEEKNSALRNWAIKNATFITLEGPLYSGTNQGPAQASQEGDQASER |
| NCBI Accession | QBP05519.1 |
|---|---|
| Location | 2196-2453 |
| Gene Name | AC4 |
| Protein Name | AC4 protein |
| Coding Region | ATGGGAGCTTGCGTATCCAGGCGCTCATCCAATTCAAAGGGAAATCCCGGTTCAGAAACCCAAGACATTTCGATGTCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCAAATTTCCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAATGATGGTGCAGCAGAGGCCTTAA |
| Protein Sequence | MGACVSRRSSNSKGNPGSETQDISMSLALIPQASSTQISRELSAGQVSSPTSRRAESTSTGVSFRSVGDLLVEVNRQVMMVQQRP |
References More References in PubMed
| 1 |
Ammara UE, et al. Plant Dis. 2015 Mar;99(3):421. doi: 10.1094/PDIS-09-14-0912-PDN. PMID: 30699712 |
|---|---|
| 2 |
Identification of Cotton leaf curl Gezira virus in Papaya in Oman. Khan AJ, et al. Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN. PMID: 30727467 |
| 3 |
Leaf Curl Disease of Carica papaya from India May Be Caused by a Bipartite Geminivirus. Saxena S, et al. Plant Dis. 1998 Jan;82(1):126. doi: 10.1094/PDIS.1998.82.1.126A. PMID: 30857046 |
| 4 |
First Report of Tomato leaf curl Palampur virus on Bitter Gourd in Pakistan. Ali I, et al. Plant Dis. 2010 Feb;94(2):276. doi: 10.1094/PDIS-94-2-0276A. PMID: 30754274 |
| 5 |
Shakir S, et al. Virol J. 2018 Aug 31;15(1):134. doi: 10.1186/s12985-018-1047-y. PMID: 30165872 |
| 6 |
Identification of an emerging cucumber virus in Taiwan using Oxford nanopore sequencing technology. Dong ZX, et al. Plant Methods. 2022 Dec 22;18(1):143. doi: 10.1186/s13007-022-00976-x. PMID: 36550551 |
| 7 |
Saxena S, et al. Biochem Mol Biol Int. 1998 Jun;45(1):101-13. doi: 10.1080/15216549800202472. PMID: 9635134 |
| 8 |
Pratap D, et al. Virol J. 2011 Jun 16;8:305. doi: 10.1186/1743-422X-8-305. PMID: 21676270 |
| 9 |
Liu Q, et al. Hortic Res. 2020 Nov 1;7(1):179. doi: 10.1038/s41438-020-00400-2. PMID: 33328436 |