Papaya leaf curl virus
Basic Information
Genomic Organization
JBrowse
Genome
TAATATTACCGGATGGCCGCGATTTCTTTAGTGGGCCCTTAACGCATTAACTGACAAGGACATGCGAACCAATCATATGACACGCTCAAAGCCTAATTGTTTTTTGGTCCCTTATTTAAACTTCGTCCCCAAGTATTTTCTTTTGCACTATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTCCACGGTTTTATATGTATGTTAGCAGTTAAATATCTGCAGTTATTAAAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTATTTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATATTCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTATTAGTGATGTTACTCGTGGAAATGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTAATGTTTTGGGCAAGATCTGGATGGATGAAAATATTAAGACTAAGGATCACACGAATAGTGTGATGTTCTTTTTAGTTAGGGATCGTAGACCTGTAGATAAACCACAAGATTTTGGAGAGGTATTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTTCGGAAATGGCATGCAACTGTTACGGGTGGACAATATGCGTCAAAGGAACAAGCCCTCGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTAAATTTTATTGAATATGATTGTTCTACATATACAATGTGTTGTAATACATCCCATAAAACATGATCAACTGATCTGATTACATTATTAATACTGTTAACTCCTAAATTATCTAAATATTTTAAAACTTGAGTCTTAAAGACCCCTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATTCGGTAGACTAGAAAACATTTGTGCATCCCCAACGCTTTCCTCAGGTTGTAGTTGAACTGTATTTGGACTTTGATTATGTCTTCTTTCATTGTGAATGGACGGTTGTGGTGTTCTGTTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATAATTGTGACAGGCTAGTGCTATGAAATATGAACATCCACAAGGGAGATCAACACGACGACGTCTGTTCCTCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTTTTCAGTGCGTTATTTTTCTCTTCGTCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATTCCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTATTGTAGACCTTAGGACTAAGGTCTAAGTGACCACACAGATAATTATGTGGACCCAAAGACCTAGCCCACATCGTCTTTCCTGTTCTACTATCACCCTCTATGACAATACTCATGGGTCTCAAAGTCCGCGCAGCGGCACCCATTACATTCTCAACAGCCCATTCTTCAAGTTCTTCAGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCTACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTATTTATTGCTAAAGCTGCGTCAGCTGAACCTGCATTTAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTCGACCATATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACTGTCCTCCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTTGAATTGGGTGGAGTTATTAGGGTGAGTGACATCGAAATGTCTGGTGTTTCTGAACTTGGATTTACCTTTGAACTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGCCACTCTGATAAATAATTTATCAGATGGGCAATTTATTGACTGAAGAATCTCGAGCATTTGCTCTTTGGGTATTGGGCATTTTGGATAAGTGAGGAAGATATTTTTGGCATTAACACAAAAAGAGTTAAGACGAGGCATATTGAATTGGGGACACTCAAAACTCTGAGGAATGGGGGACTCTGGGGACGCATTTATATGGTGTCCCCAAATGGCTTTTTCGTAATTTTGAAAGAAAATTCAAAATTCAAAATCCCAAAGCGGCCATCCGTA
Gene Information
|
NCBI Accession
|
NP_689456.1
|
|
Location
|
150-506 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTCCACGGTTTTATATGTATGTTAGCAGTTAAATATCTGCAGTTATTAAAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTATTTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATATTCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG |
|
Protein Sequence
|
MWDPLLNEFPETVHGFICMLAVKYLQLLKKTYSPDTLGYDLFRDLISVIRARNYVEATSRYIHFHARFEGTPPSQLRQPVCEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP |
|
NCBI Accession
|
NP_689457.1
|
|
Location
|
301-618 |
|
Gene Name
|
AC5 |
|
Protein Name
|
AC5 protein |
|
Coding Region
|
ATGGGTCAGCCCATTTCCACGAGTAACATCACTAATACACATAACTTTACCTATATGCTGAATGTCATGTCTAGACTCAAAAGACTGGACCTTACATGGGCCTTCACATCCTCTAGGGACATCTGGACTTCTGTACATCCTGTACATCCTGGGCTTTCTGTTCATGGGCCTGTTCGCCCATGCTTTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCACATACGGGCTGTCGAAGTTGAGACGGCGGCGTACCTTCGAAGCGGGCGTGGAAATGAATATATCTGCTGGTCGCTTCGACATAATTTCTAG |
|
Protein Sequence
|
MGQPISTSNITNTHNFTYMLNVMSRLKRLDLTWAFTSSRDIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIRAVEVETAAYLRSGRGNEYICWSLRHNF |
|
NCBI Accession
|
NP_689458.1
|
|
Location
|
310-1080 |
|
Gene Name
|
AV1 |
|
Protein Name
|
Coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATATTCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTATTAGTGATGTTACTCGTGGAAATGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTAATGTTTTGGGCAAGATCTGGATGGATGAAAATATTAAGACTAAGGATCACACGAATAGTGTGATGTTCTTTTTAGTTAGGGATCGTAGACCTGTAGATAAACCACAAGATTTTGGAGAGGTATTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTTCGGAAATGGCATGCAACTGTTACGGGTGGACAATATGCGTCAAAGGAACAAGCCCTCGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA |
|
Protein Sequence
|
MSKRPADIFISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGNGLTHRVGKRFCVKSVNVLGKIWMDENIKTKDHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
NP_689459.1
|
|
Location
|
1077-1481 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replicase-associated protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACCGTCCATTCACAATGAAAGAAGACATAATCAAAGTCCAAATACAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATGCACAAATGTTTTCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAGGGGTCTTTAAGACTCAAGTTTTAAAATATTTAGATAATTTAGGAGTTAACAGTATTAATAATGTAATCAGATCAGTTGATCATGTTTTATGGGATGTATTACAACACATTGTATATGTAGAACAATCATATTCAATAAAATTTAATATTTATTAA |
|
Protein Sequence
|
MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFTMKEDIIKVQIQFNYNLRKALGMHKCFLVYRIWMTSQPQTGRFLGVFKTQVLKYLDNLGVNSINNVIRSVDHVLWDVLQHIVYVEQSYSIKFNIY |
|
NCBI Accession
|
NP_689460.1
|
|
Location
|
1222-1626 |
|
Gene Name
|
AC2 |
|
Protein Name
|
replicase-associated protein |
|
Coding Region
|
ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGAGGAACAGACGTCGTCGTGTTGATCTCCCTTGTGGATGTTCATATTTCATAGCACTAGCCTGTCACAATTATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACCGTCCATTCACAATGAAAGAAGACATAATCAAAGTCCAAATACAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATGCACAAATGTTTTCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAGGGGTCTTTAA |
|
Protein Sequence
|
MRSSSPSKAHSTQVPIKVQHRLAKKRNRRRRVDLPCGCSYFIALACHNYGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRTPQPSIHNERRHNQSPNTVQLQPEESVGDAQMFSSLPNLDDFTASDWSFLRGL |
|
NCBI Accession
|
NP_689461.1
|
|
Location
|
1529-2614 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replicase |
|
Coding Region
|
ATGCCTCGTCTTAACTCTTTTTGTGTTAATGCCAAAAATATCTTCCTCACTTATCCAAAATGCCCAATACCCAAAGAGCAAATGCTCGAGATTCTTCAGTCAATAAATTGCCCATCTGATAAATTATTTATCAGAGTGGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCAAGTTCAGAAACACCAGACATTTCGATGTCACTCACCCTAATAACTCCACCCAATTCAACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGGAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTAAATGCAGGTTCAGCTGACGCAGCTTTAGCAATAAATAGGGAAAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCTGTAGAGGTTTATGTTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCTGAAGAACTTGAAGAATGGGCTGTTGAGAATGTAATGGGTGCCGCTGCGCGGACTTTGAGACCCATGAGTATTGTCATAGAGGGTGATAGTAGAACAGGAAAGACGATGTGGGCTAGGTCTTTGGGTCCACATAATTATCTGTGTGGTCACTTAGACCTTAGTCCTAAGGTCTACAATAATGATGCCTGGTACAACGTCATTGATGACGTCGATCCGCATTATTTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGAGGAATACCCACTATCTTCCTCTGCAATCCAGGACCCAACTCAAGCTATAAAGAGTTCTTGGACGAAGAGAAAAATAACGCACTGAAAAATTGGGCTTTAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGAGGAACAGACGTCGTCGTGTTGA |
|
Protein Sequence
|
MPRLNSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKSKFRNTRHFDVTHPNNSTQFNPNFQGAKSSSDVKSYIEEDSDYIDWGQFQIDGRYGRGGQQTANDAAAEALNAGSADAALAINREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFLSSSFNQVPEELEEWAVENVMGAAARTLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNNALKNWALKNAIFVTLEGPLYSGSNQSAAQASQEEEQTSSC |
|
NCBI Accession
|
NP_689462.1
|
|
Location
|
2200-2457 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCAAGTTCAGAAACACCAGACATTTCGATGTCACTCACCCTAATAACTCCACCCAATTCAACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGGAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTAA |
|
Protein Sequence
|
MGLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPALMSSPTSRRTVITSTGVSFRSMEDMVEEVNRQLMMQQQRP |