Papaya leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000841085.1
Release date 2015/2/12
Submitter Saxena,S., Hallan,V.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004147
TAATATTACCGGATGGCCGCGATTTCTTTAGTGGGCCCTTAACGCATTAACTGACAAGGACATGCGAACCAATCATATGACACGCTCAAAGCCTAATTGTTTTTTGGTCCCTTATTTAAACTTCGTCCCCAAGTATTTTCTTTTGCACTATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTCCACGGTTTTATATGTATGTTAGCAGTTAAATATCTGCAGTTATTAAAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTATTTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATATTCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTATTAGTGATGTTACTCGTGGAAATGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTAATGTTTTGGGCAAGATCTGGATGGATGAAAATATTAAGACTAAGGATCACACGAATAGTGTGATGTTCTTTTTAGTTAGGGATCGTAGACCTGTAGATAAACCACAAGATTTTGGAGAGGTATTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTTCGGAAATGGCATGCAACTGTTACGGGTGGACAATATGCGTCAAAGGAACAAGCCCTCGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTAAATTTTATTGAATATGATTGTTCTACATATACAATGTGTTGTAATACATCCCATAAAACATGATCAACTGATCTGATTACATTATTAATACTGTTAACTCCTAAATTATCTAAATATTTTAAAACTTGAGTCTTAAAGACCCCTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATTCGGTAGACTAGAAAACATTTGTGCATCCCCAACGCTTTCCTCAGGTTGTAGTTGAACTGTATTTGGACTTTGATTATGTCTTCTTTCATTGTGAATGGACGGTTGTGGTGTTCTGTTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATAATTGTGACAGGCTAGTGCTATGAAATATGAACATCCACAAGGGAGATCAACACGACGACGTCTGTTCCTCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTTTTCAGTGCGTTATTTTTCTCTTCGTCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATTCCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTATTGTAGACCTTAGGACTAAGGTCTAAGTGACCACACAGATAATTATGTGGACCCAAAGACCTAGCCCACATCGTCTTTCCTGTTCTACTATCACCCTCTATGACAATACTCATGGGTCTCAAAGTCCGCGCAGCGGCACCCATTACATTCTCAACAGCCCATTCTTCAAGTTCTTCAGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCTACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTATTTATTGCTAAAGCTGCGTCAGCTGAACCTGCATTTAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTCGACCATATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACTGTCCTCCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTTGAATTGGGTGGAGTTATTAGGGTGAGTGACATCGAAATGTCTGGTGTTTCTGAACTTGGATTTACCTTTGAACTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGCCACTCTGATAAATAATTTATCAGATGGGCAATTTATTGACTGAAGAATCTCGAGCATTTGCTCTTTGGGTATTGGGCATTTTGGATAAGTGAGGAAGATATTTTTGGCATTAACACAAAAAGAGTTAAGACGAGGCATATTGAATTGGGGACACTCAAAACTCTGAGGAATGGGGGACTCTGGGGACGCATTTATATGGTGTCCCCAAATGGCTTTTTCGTAATTTTGAAAGAAAATTCAAAATTCAAAATCCCAAAGCGGCCATCCGTA

Gene Information

NCBI Accession NP_689456.1
Location 150-506
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTCCACGGTTTTATATGTATGTTAGCAGTTAAATATCTGCAGTTATTAAAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTATTTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATATTCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG
Protein Sequence MWDPLLNEFPETVHGFICMLAVKYLQLLKKTYSPDTLGYDLFRDLISVIRARNYVEATSRYIHFHARFEGTPPSQLRQPVCEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP

NCBI Accession NP_689457.1
Location 301-618
Gene Name AC5
Protein Name AC5 protein
Coding Region ATGGGTCAGCCCATTTCCACGAGTAACATCACTAATACACATAACTTTACCTATATGCTGAATGTCATGTCTAGACTCAAAAGACTGGACCTTACATGGGCCTTCACATCCTCTAGGGACATCTGGACTTCTGTACATCCTGTACATCCTGGGCTTTCTGTTCATGGGCCTGTTCGCCCATGCTTTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCACATACGGGCTGTCGAAGTTGAGACGGCGGCGTACCTTCGAAGCGGGCGTGGAAATGAATATATCTGCTGGTCGCTTCGACATAATTTCTAG
Protein Sequence MGQPISTSNITNTHNFTYMLNVMSRLKRLDLTWAFTSSRDIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIRAVEVETAAYLRSGRGNEYICWSLRHNF

NCBI Accession NP_689458.1
Location 310-1080
Gene Name AV1
Protein Name Coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATATTCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTATTAGTGATGTTACTCGTGGAAATGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTAATGTTTTGGGCAAGATCTGGATGGATGAAAATATTAAGACTAAGGATCACACGAATAGTGTGATGTTCTTTTTAGTTAGGGATCGTAGACCTGTAGATAAACCACAAGATTTTGGAGAGGTATTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTTCGGAAATGGCATGCAACTGTTACGGGTGGACAATATGCGTCAAAGGAACAAGCCCTCGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA
Protein Sequence MSKRPADIFISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGNGLTHRVGKRFCVKSVNVLGKIWMDENIKTKDHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession NP_689459.1
Location 1077-1481
Gene Name AC3
Protein Name replicase-associated protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACCGTCCATTCACAATGAAAGAAGACATAATCAAAGTCCAAATACAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATGCACAAATGTTTTCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAGGGGTCTTTAAGACTCAAGTTTTAAAATATTTAGATAATTTAGGAGTTAACAGTATTAATAATGTAATCAGATCAGTTGATCATGTTTTATGGGATGTATTACAACACATTGTATATGTAGAACAATCATATTCAATAAAATTTAATATTTATTAA
Protein Sequence MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFTMKEDIIKVQIQFNYNLRKALGMHKCFLVYRIWMTSQPQTGRFLGVFKTQVLKYLDNLGVNSINNVIRSVDHVLWDVLQHIVYVEQSYSIKFNIY

NCBI Accession NP_689460.1
Location 1222-1626
Gene Name AC2
Protein Name replicase-associated protein
Coding Region ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGAGGAACAGACGTCGTCGTGTTGATCTCCCTTGTGGATGTTCATATTTCATAGCACTAGCCTGTCACAATTATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACCGTCCATTCACAATGAAAGAAGACATAATCAAAGTCCAAATACAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATGCACAAATGTTTTCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAGGGGTCTTTAA
Protein Sequence MRSSSPSKAHSTQVPIKVQHRLAKKRNRRRRVDLPCGCSYFIALACHNYGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRTPQPSIHNERRHNQSPNTVQLQPEESVGDAQMFSSLPNLDDFTASDWSFLRGL

NCBI Accession NP_689461.1
Location 1529-2614
Gene Name AC1
Protein Name replicase
Coding Region ATGCCTCGTCTTAACTCTTTTTGTGTTAATGCCAAAAATATCTTCCTCACTTATCCAAAATGCCCAATACCCAAAGAGCAAATGCTCGAGATTCTTCAGTCAATAAATTGCCCATCTGATAAATTATTTATCAGAGTGGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCAAGTTCAGAAACACCAGACATTTCGATGTCACTCACCCTAATAACTCCACCCAATTCAACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGGAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTAAATGCAGGTTCAGCTGACGCAGCTTTAGCAATAAATAGGGAAAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCTGTAGAGGTTTATGTTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCTGAAGAACTTGAAGAATGGGCTGTTGAGAATGTAATGGGTGCCGCTGCGCGGACTTTGAGACCCATGAGTATTGTCATAGAGGGTGATAGTAGAACAGGAAAGACGATGTGGGCTAGGTCTTTGGGTCCACATAATTATCTGTGTGGTCACTTAGACCTTAGTCCTAAGGTCTACAATAATGATGCCTGGTACAACGTCATTGATGACGTCGATCCGCATTATTTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGAGGAATACCCACTATCTTCCTCTGCAATCCAGGACCCAACTCAAGCTATAAAGAGTTCTTGGACGAAGAGAAAAATAACGCACTGAAAAATTGGGCTTTAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGAGGAACAGACGTCGTCGTGTTGA
Protein Sequence MPRLNSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKSKFRNTRHFDVTHPNNSTQFNPNFQGAKSSSDVKSYIEEDSDYIDWGQFQIDGRYGRGGQQTANDAAAEALNAGSADAALAINREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFLSSSFNQVPEELEEWAVENVMGAAARTLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNNALKNWALKNAIFVTLEGPLYSGSNQSAAQASQEEEQTSSC

NCBI Accession NP_689462.1
Location 2200-2457
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCAAGTTCAGAAACACCAGACATTTCGATGTCACTCACCCTAATAACTCCACCCAATTCAACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGGAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTAA
Protein Sequence MGLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPALMSSPTSRRTVITSTGVSFRSMEDMVEEVNRQLMMQQQRP

References More References in PubMed

1

Papaya Leaf Curl Virus (PaLCuV) Infection on Papaya (Carica papaya L.) Plants Alters Anatomical and Physiological Properties and Reduces Bioactive Components.

Soni SK, et al.  Plants (Basel). 2022 Feb 22;11(5):579. doi: 10.3390/plants11050579.

PMID: 35270048
2

A molecular insight into papaya leaf curl-a severe viral disease.

Varun P, et al.  Protoplasma. 2017 Nov;254(6):2055-2070. doi: 10.1007/s00709-017-1126-8. Epub 2017 May 25.

PMID: 28540512
3

Occurrence of tomato leaf curl Bangladesh virus and associated subviral DNA molecules in papaya in Bangladesh: molecular detection and characterization.

Hamim I, et al.  Arch Virol. 2019 Jun;164(6):1661-1665. doi: 10.1007/s00705-019-04235-8. Epub 2019 Apr 4.

PMID: 30949815
4

Codiaeum variegatum in Pakistan harbours pedilanthus leaf curl virus and papaya leaf curl virus as well as a newly identified betasatellite.

Akram A, et al.  Arch Virol. 2020 Aug;165(8):1877-1881. doi: 10.1007/s00705-020-04633-3. Epub 2020 May 23.

PMID: 32447620
5

An Insight into Emerging Begomoviruses and their Satellite Complex causing Papaya Leaf Curl Disease.

Srivastava A, et al.  Curr Genomics. 2023 Jun 23;24(1):2-17. doi: 10.2174/1389202924666230207111530.

PMID: 37920727
6

A Mixed Infection of Lettuce chlorosis virus, Papaya ringspot virus, and Tomato yellow leaf curl virus-IL Detected in a Texas Papaya Orchard Affected by a Virus-Like Disease Outbreak.

Alabi OJ, et al.  Plant Dis. 2017 Jul;101(7):1094-1102. doi: 10.1094/PDIS-01-17-0118-RE. Epub 2017 Apr 19.

PMID: 30682949
7

Molecular Identification and Genetic Diversity Analysis of Papaya Leaf Curl China Virus Infecting Ageratum conyzoides.

Zhang L, et al.  Plant Pathol J. 2024 Oct;40(5):551-558. doi: 10.5423/PPJ.NT.04.2024.0066. Epub 2024 Oct 1.

PMID: 39397308
8

Identification of Cotton leaf curl Gezira virus in Papaya in Oman.

Khan AJ, et al.  Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN.

PMID: 30727467
9

First Report of Tomato leaf curl Albatinah virus (ToLCABV) and its Associated Betasatellite Infecting Papaya in Oman.

Ammara UE, et al.  Plant Dis. 2015 Mar;99(3):421. doi: 10.1094/PDIS-09-14-0912-PDN.

PMID: 30699712
10

Association of tomato leaf curl Gujarat virus and tomato leaf curl Bangladesh betasatellite on papaya showing typical leaf curl symptoms in North India.

Varun P, et al.  3 Biotech. 2018 May;8(5):243. doi: 10.1007/s13205-018-1254-7. Epub 2018 May 8.

PMID: 29744275