Andrographis yellow vein leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_001441075.1 |
| Isolate |
India: Barabanki |
| Release date |
2015/11/7 |
| Submitter |
Khan,A., Saeed,S.T., Samad,A. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCTTTTTTTTGTTAGACCCGCAAAGTCCCCACTGACAACCTCCTATAGACCAATGAGAATCGTTCCCCATAGTCTCATTGTTATGTGGTCCCCCTATAAACTTAGTGCGCAAGTTTTGCTTCGCATTCACAATGTGGGACCCACTATTGAATGAGTTTCCAGAAACCGTTCATGGGTTTCGGTGCATGTTGGCAATGAAATTTCTGAAGTTAGTAGAAGAAACGTATTCCCGTGATACATTGGGGTATGATTTAATTAGTGATTTGATATCTGTTGTTCGTGCTAGGAACTATGACGAAGCGTCCAGGAGATACCATAATTTCAATGCCCGCATCCAAGGTACGACGTCGTCTCAGCTTCGACAGCCCGTTTGCGAGCCGTGCTTATGCCCCCACTGCCCGCGCCACCAGGGAAAGGGCATGGGCGAACAGGCCCATGGTCGGAAAGCCCAAAATATACAGATTGTACAGAAGTCCAGACGTTCCGAGGGGATGTGAGGGCCCATGTAAGGTTCAGTCATTGGAGTCCAGAACTGATATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACCCGTGGTGTTGGGCTGACCCACCGAGTGGGTAAAAGGTTTTGTGTTAAATCCGTTTATGTCTTGGGTAAAATATGGATGGATGAAAATATCAAGACCAGGATTCACACTAATAGTGTGATGTTCTTCCTTGTCAGTGATAGTAAGCCTGTTGATAAGCCCCCAGATTTCGGTGAAGTTTTTAATATGTTTGACAATGAGCCCAGTACAGCTACTGTGAAGAATATGCATCGTGATAGGTACCAGGTGTTAAGGAAATGGCATGCTACGGTGACAGGTGGTCAGTATGCATCCAAGGAGCAGGCTCTGGTGAAGAAGTTTGTTAGAGTCAATAACTATGTTGTTTACAACCAGCAGGAGGCTGGCAAATATGAGAACCATAGTGAGAATGCATTAATGTTGTATATGGCATGTACCCATGCGTCTAATCCTGTGTATGCTACTCTGAAGATACGGATCTATTTTTACGATTCAGTATCAAATTAATAAAGTTTATATTTTATATCATAAGGCATTTCTACATCAATGGTGTCTTCCATTACAATTTCTAATACATGTCTAAAAGTCCTGATACAATTATTCAAACTAATGACCCCTAAATTATCTAAATATCTCAAAACTTGAGTCTTAAATACTCTTAAGAAACGCCCAGTCTGAGGATGTAAACGAGTGAAGATCCTGAAGCCCAGAAAACACTTGTGTATCCCCAGAGCCTTCCTCAGGTTGTGATTGAACTGGATCCGGATGTTGATGATGTCGTGGTTCATTAGGAATGGCCTGTTGTGGTGTTGTATTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATATACGCGCCATTCTCTGCCTGAGCTGCAGTGATGGACTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATGTGTACGTAGTATGAGCACCCACACGGTAGATCAACCCTCTTACGCCGGATGGCTCTACGCTTAGCAGCTCTGTGTCGGACCTTGATTGGTACCTGAGTAGAGTGGGCCTTCGAGGGTGATGAAGGTGGCATTTTTTAAAGCCCAGGCTTTCAGTGCGCTATTCTTCTCTTCATCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAACTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTGTACCAGGCATCATTATTGTATACCTTTGGACTAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCCAATGATCTAGCCCACATCGTCTTCCCCGTTCGACTGTCACCCTCTATCACAATACTTATGGGTCTCAAAGGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCACTCCTCAAGTTCTTCTGGAACTTGATCAAAGGAAGAAGAAGAAAAAGGAGAAACATAAACCTCCACCGGAGGTGTAAAGATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCAGCTTCAGCCGAGCCTGCATTTAGGGCCTCTGCTGCAGCATCATCAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTTGCTCCCTGGAAGTTTGGATGGAAATGAGTTGAGGTATTAGGGTGAGTTACATCGAAATGTCTGGGGTTTCTGAATTTGGATTTACCTTCGAACTGGATAAGGGCATGAAGATGCAGAGACCCATCTTCGTGTTTTTCTTGTGATATTCTGATGAATAATTTATCAGATGGACAGGTTTTGGATTTGGGTAGTTCGAGCATTTGCTCTTTTGGTAATGGACATTTCGGATAAGTGAGGAAGATATTTTTGGCCTTCACTTGGAATTGGTGTGTACGAGGCATATTGAATTGGGTGCTCTCAAAACTCTATGGAATGGGGTGCTTTGGGTACCTAATTATACCGAGTACCCAAATGGCATATTCGTAATTTCAAAATAAAATTCAAGTTCCTCACGCTCCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009177709.1
|
|
Location
|
145-510 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGACCCACTATTGAATGAGTTTCCAGAAACCGTTCATGGGTTTCGGTGCATGTTGGCAATGAAATTTCTGAAGTTAGTAGAAGAAACGTATTCCCGTGATACATTGGGGTATGATTTAATTAGTGATTTGATATCTGTTGTTCGTGCTAGGAACTATGACGAAGCGTCCAGGAGATACCATAATTTCAATGCCCGCATCCAAGGTACGACGTCGTCTCAGCTTCGACAGCCCGTTTGCGAGCCGTGCTTATGCCCCCACTGCCCGCGCCACCAGGGAAAGGGCATGGGCGAACAGGCCCATGGTCGGAAAGCCCAAAATATACAGATTGTACAGAAGTCCAGACGTTCCGAGGGGATGTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAMKFLKLVEETYSRDTLGYDLISDLISVVRARNYDEASRRYHNFNARIQGTTSSQLRQPVCEPCLCPHCPRHQGKGMGEQAHGRKAQNIQIVQKSRRSEGM |
|
NCBI Accession
|
YP_009177710.1
|
|
Location
|
305-1075 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGACGAAGCGTCCAGGAGATACCATAATTTCAATGCCCGCATCCAAGGTACGACGTCGTCTCAGCTTCGACAGCCCGTTTGCGAGCCGTGCTTATGCCCCCACTGCCCGCGCCACCAGGGAAAGGGCATGGGCGAACAGGCCCATGGTCGGAAAGCCCAAAATATACAGATTGTACAGAAGTCCAGACGTTCCGAGGGGATGTGAGGGCCCATGTAAGGTTCAGTCATTGGAGTCCAGAACTGATATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACCCGTGGTGTTGGGCTGACCCACCGAGTGGGTAAAAGGTTTTGTGTTAAATCCGTTTATGTCTTGGGTAAAATATGGATGGATGAAAATATCAAGACCAGGATTCACACTAATAGTGTGATGTTCTTCCTTGTCAGTGATAGTAAGCCTGTTGATAAGCCCCCAGATTTCGGTGAAGTTTTTAATATGTTTGACAATGAGCCCAGTACAGCTACTGTGAAGAATATGCATCGTGATAGGTACCAGGTGTTAAGGAAATGGCATGCTACGGTGACAGGTGGTCAGTATGCATCCAAGGAGCAGGCTCTGGTGAAGAAGTTTGTTAGAGTCAATAACTATGTTGTTTACAACCAGCAGGAGGCTGGCAAATATGAGAACCATAGTGAGAATGCATTAATGTTGTATATGGCATGTACCCATGCGTCTAATCCTGTGTATGCTACTCTGAAGATACGGATCTATTTTTACGATTCAGTATCAAATTAA |
|
Protein Sequence
|
MTKRPGDTIISMPASKVRRRLSFDSPFASRAYAPTARATRERAWANRPMVGKPKIYRLYRSPDVPRGCEGPCKVQSLESRTDIQHIGKVMCVSDVTRGVGLTHRVGKRFCVKSVYVLGKIWMDENIKTRIHTNSVMFFLVSDSKPVDKPPDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
|
NCBI Accession
|
YP_009177711.1
|
|
Location
|
1072-1476 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAGTCCATCACTGCAGCTCAGGCAGAGAATGGCGCGTATATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAATACAACACCACAACAGGCCATTCCTAATGAACCACGACATCATCAACATCCGGATCCAGTTCAATCACAACCTGAGGAAGGCTCTGGGGATACACAAGTGTTTTCTGGGCTTCAGGATCTTCACTCGTTTACATCCTCAGACTGGGCGTTTCTTAAGAGTATTTAAGACTCAAGTTTTGAGATATTTAGATAATTTAGGGGTCATTAGTTTGAATAATTGTATCAGGACTTTTAGACATGTATTAGAAATTGTAATGGAAGACACCATTGATGTAGAAATGCCTTATGATATAAAATATAAACTTTATTAA |
|
Protein Sequence
|
MDSRTGESITAAQAENGAYIWEIQNPLYFKIIQHHNRPFLMNHDIINIRIQFNHNLRKALGIHKCFLGFRIFTRLHPQTGRFLRVFKTQVLRYLDNLGVISLNNCIRTFRHVLEIVMEDTIDVEMPYDIKYKLY |
|
NCBI Accession
|
YP_009177712.1
|
|
Location
|
1217-1624 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transcriptional activator protein |
|
Coding Region
|
ATGCCACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTACCAATCAAGGTCCGACACAGAGCTGCTAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGATCTACCGTGTGGGTGCTCATACTACGTACACATCAACTGCCACAACCATGGATTCACGCACAGGGGAGTCCATCACTGCAGCTCAGGCAGAGAATGGCGCGTATATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAATACAACACCACAACAGGCCATTCCTAATGAACCACGACATCATCAACATCCGGATCCAGTTCAATCACAACCTGAGGAAGGCTCTGGGGATACACAAGTGTTTTCTGGGCTTCAGGATCTTCACTCGTTTACATCCTCAGACTGGGCGTTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MPPSSPSKAHSTQVPIKVRHRAAKRRAIRRKRVDLPCGCSYYVHINCHNHGFTHRGVHHCSSGREWRVYLGDSKSPVFQDNTTPQQAIPNEPRHHQHPDPVQSQPEEGSGDTQVFSGLQDLHSFTSSDWAFLKSI |
|
NCBI Accession
|
YP_009177713.1
|
|
Location
|
1554-2612 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGCCTCGTACACACCAATTCCAAGTGAAGGCCAAAAATATCTTCCTCACTTATCCGAAATGTCCATTACCAAAAGAGCAAATGCTCGAACTACCCAAATCCAAAACCTGTCCATCTGATAAATTATTCATCAGAATATCACAAGAAAAACACGAAGATGGGTCTCTGCATCTTCATGCCCTTATCCAGTTCGAAGGTAAATCCAAATTCAGAAACCCCAGACATTTCGATGTAACTCACCCTAATACCTCAACTCATTTCCATCCAAACTTCCAGGGAGCAAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTGATGATGCTGCAGCAGAGGCCCTAAATGCAGGCTCGGCTGAAGCTGCTTTAGCAATAATTAGGGAAAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATCTTTACACCTCCGGTGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCCTTTGATCAAGTTCCAGAAGAACTTGAGGAGTGGGCTGCCGAGAACGTTGTCAGTGCCGCTGCGCGGCCTTTGAGACCCATAAGTATTGTGATAGAGGGTGACAGTCGAACGGGGAAGACGATGTGGGCTAGATCATTGGGACCACATAATTATTTGTGTGGACATCTAGACCTTAGTCCAAAGGTATACAATAATGATGCCTGGTACAACGTCATTGATGACGTAGATCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACTAAGTACGGAAAGCCAGTTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCAAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATAGCGCACTGAAAGCCTGGGCTTTAAAAAATGCCACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTACCAATCAAGGTCCGACACAGAGCTGCTAA |
|
Protein Sequence
|
MPRTHQFQVKAKNIFLTYPKCPLPKEQMLELPKSKTCPSDKLFIRISQEKHEDGSLHLHALIQFEGKSKFRNPRHFDVTHPNTSTHFHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQIDGRSARGGQQTADDAAAEALNAGSAEAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKAWALKNATFITLEGPLYSGTNQGPTQSC |