Papaya leaf crumple virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000887775.1 |
| Isolate |
India: Haryana |
| Release date |
2015/2/22 |
| Submitter |
Singh-Pant,P., Pant,P., Mukherjee,S.K., Mazumdar-Leighton,S., Singh,P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCAAATTTTTAGGTGGGCCCTCAACCAATGAAATTCACGCTACATGGCCTATTTAGTGCGGGGGGACCAATAAATAGACTTGCTCACCAAGTTTGTATCTACAAACATGTGGGACCCACTATTGAATGAGTTTCCAGAAACTGTTCATGGGTTTAGGTGCATGTTGGCAGTGAAATACCTCCAGCTAGTAGAAAATACGTATTCCCCAGACACTCTGGGATACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTCGGAATTATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGCGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCCTGGACCAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCAAGGGGCTGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGGAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCGTCTATGTATTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCTGTTGACAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGACAGATATCAGGTGTTAAGGAAGTGGCATGCCACTGTGACAGGCGGTTTATACGCACCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTCAATAATTATGTTGTGTACAACTACCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCCGTGTATGCCACTTTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAATAAATATTGAATTTTATATCATGATCCTCAATTACATTAATTGTGCCCTCAAGTACATCATATAATACATGTCTGAAAGCCTTAATACAATTATTTATACTAATTACGCCTAAACTATCTAAATATCTTAAAACTTGAGTCTTAAAGACTCTTAAGAAATGCCAAGTCTGAAGATGTAAACGAGTGTGGATCCTCAAGCCCAAGAAACAATTCATTATCCCCAGTCTCTTCCTGAGGTTGTGATTGAATTGTATCTGAACGGAGATGATGTCTTCCTTCATTAGGAACGGCCTGTTGTGGTGTTCTGTTATCTTGAAATAGAGGGGATTTGGGGTTTCCCAGATATACACGCCATTCATTGCATGACCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATGTGTACGTAGTATGAGCAGCCACACTCGAGGTCAACCCTCTTACGCCGGAAGGCTCTACGCTTGGCTAGCCTGTGTTGGACCTTGATGGGTACCTGAGTACAGTGGCTCTGTGAGGGTGATGAATGTTGCATTATGTATAGCCCACGACCTCAGTGCTGAGTTCTTTTCCTCATCGAGGTATTCTCTATAGCAGGAATTGGGCCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTTTAAAATGCTTTAGGTAGTGGGGGTCTACGTCATCAATGATGTTATACCATGCATCATTTGAATATATCTTGCGACTCAGATCTAAATGTCCACACAGGTAATTGTGTGGTCCCAAAGACCTGGCCCACATTGTCTTGCCCGTACGACTATCACCCTCAATGACGATACTTTTAGGTCTCAATGGCCGCGCAGCGGGACCCATCACATTTTCAGAGGCCCATTCCTCTATGGCCTCTGGAACTTGATCGAAGGAAGATGAAAGAAAAGGGGAAACATAAACCTCCATTGGAGGTGCAAAAATCCTATCTAAATTAGCATTAAGATTATGAAATTGTAAGACATAATCCTTTGGGGCTAATTCCCTAATGACTCTAAGAGCCTCTGACTTACTGCCTGTATTAATTGCTTTGGCGTAAGCATCATTGGCTGACTGTTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCATCCTTCTCCATATAGGACTTGACATCTGAGCTTGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAACCTGTTATTTTGGCACTTGTATTTTCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGGAGCTCTCTGCAGATTTTTATGTATTTTTTATTTACTGGGGTTTGTAGGTTCTGAAGTTGGGTGAGTGCCTCTTCTTTAGTAAGAGAGCATTTTGGATAAGTGAGAAAGAAATTTTTGGCATATATTTGAAAACGCTTGGGAGGAGCCATTGACTTGGTCAATCGGTACTCAGCACTAGTCCTATGGCAATTGGTGATCAGTACTCAATATATAGTGAGTACCAAATGGCAGAATTGTAATTTGGAAAAGAAAATTACTTTAATTCAAATTCCCATAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_004021917.1
|
|
Location
|
120-485 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGACCCACTATTGAATGAGTTTCCAGAAACTGTTCATGGGTTTAGGTGCATGTTGGCAGTGAAATACCTCCAGCTAGTAGAAAATACGTATTCCCCAGACACTCTGGGATACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTCGGAATTATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGCGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCCTGGACCAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCAAGGGGCTGTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYHHFNARLEGTPPSQLRQPICEPRCCPHCPRHKSKGLDQQAHEPKAQDVQDVQEPRCSKGL |
|
NCBI Accession
|
YP_004021918.1
|
|
Location
|
258-548 |
|
Gene Name
|
AC5 |
|
Protein Name
|
AC5 protein |
|
Coding Region
|
ATGACTTTCCCAATGTGCTGGATATCATGTCTGGACTCAAATGACTGGACCTTACACGGGCCTTCACAGCCCCTTGGAACATCTGGGCTCCTGTACATCCTGTACATCCTGGGCTTTCGGTTCATGGGCCTGTTGGTCCAGGCCCTTGCTTTTGTGACGCGGACAATGGGGGCAGCAGCGCGGCTCGCATATGGGCTGTCGAAGTTGAGACGGCGGCGTACCTTCGAGGCGGGCGTTGAAATGATGATATCTGCTGGTCGCTTCGACATAATTCCGAGCCCTAATAACTGA |
|
Protein Sequence
|
MTFPMCWISCLDSNDWTLHGPSQPLGTSGLLYILYILGFRFMGLLVQALAFVTRTMGAAARLAYGLSKLRRRRTFEAGVEMMISAGRFDIIPSPNN |
|
NCBI Accession
|
YP_004021919.1
|
|
Location
|
280-1050 |
|
Gene Name
|
AV1 |
|
Protein Name
|
AV1 protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGCGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCCTGGACCAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCAAGGGGCTGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGGAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCGTCTATGTATTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCTGTTGACAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGACAGATATCAGGTGTTAAGGAAGTGGCATGCCACTGTGACAGGCGGTTTATACGCACCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTCAATAATTATGTTGTGTACAACTACCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCCGTGTATGCCACTTTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGLYAPKEQALVKKFIRVNNYVVYNYQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
|
NCBI Accession
|
YP_004021920.1
|
|
Location
|
1047-1451 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAATCCATCACTGCAGGTCATGCAATGAATGGCGTGTATATCTGGGAAACCCCAAATCCCCTCTATTTCAAGATAACAGAACACCACAACAGGCCGTTCCTAATGAAGGAAGACATCATCTCCGTTCAGATACAATTCAATCACAACCTCAGGAAGAGACTGGGGATAATGAATTGTTTCTTGGGCTTGAGGATCCACACTCGTTTACATCTTCAGACTTGGCATTTCTTAAGAGTCTTTAAGACTCAAGTTTTAAGATATTTAGATAGTTTAGGCGTAATTAGTATAAATAATTGTATTAAGGCTTTCAGACATGTATTATATGATGTACTTGAGGGCACAATTAATGTAATTGAGGATCATGATATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGESITAGHAMNGVYIWETPNPLYFKITEHHNRPFLMKEDIISVQIQFNHNLRKRLGIMNCFLGLRIHTRLHLQTWHFLRVFKTQVLRYLDSLGVISINNCIKAFRHVLYDVLEGTINVIEDHDIKFNIY |
|
NCBI Accession
|
YP_004021921.1
|
|
Location
|
1192-1599 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCAACATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCCATCAAGGTCCAACACAGGCTAGCCAAGCGTAGAGCCTTCCGGCGTAAGAGGGTTGACCTCGAGTGTGGCTGCTCATACTACGTACACATCAACTGCCACAACCATGGATTCACGCACAGGGGAATCCATCACTGCAGGTCATGCAATGAATGGCGTGTATATCTGGGAAACCCCAAATCCCCTCTATTTCAAGATAACAGAACACCACAACAGGCCGTTCCTAATGAAGGAAGACATCATCTCCGTTCAGATACAATTCAATCACAACCTCAGGAAGAGACTGGGGATAATGAATTGTTTCTTGGGCTTGAGGATCCACACTCGTTTACATCTTCAGACTTGGCATTTCTTAAGAGTCTTTAA |
|
Protein Sequence
|
MQHSSPSQSHCTQVPIKVQHRLAKRRAFRRKRVDLECGCSYYVHINCHNHGFTHRGIHHCRSCNEWRVYLGNPKSPLFQDNRTPQQAVPNEGRHHLRSDTIQSQPQEETGDNELFLGLEDPHSFTSSDLAFLKSL |
|
NCBI Accession
|
YP_004021922.1
|
|
Location
|
1523-2587 |
|
Gene Name
|
AC1 |
|
Protein Name
|
AC1 protein |
|
Coding Region
|
ATGGCTCCTCCCAAGCGTTTTCAAATATATGCCAAAAATTTCTTTCTCACTTATCCAAAATGCTCTCTTACTAAAGAAGAGGCACTCACCCAACTTCAGAACCTACAAACCCCAGTAAATAAAAAATACATAAAAATCTGCAGAGAGCTCCACGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATACAAGTGCCAAAATAACAGGTTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGTCAAGCTCAGATGTCAAGTCCTATATGGAGAAGGATGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAGTCAGCCAATGATGCTTACGCCAAAGCAATTAATACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAGGGAATTAGCCCCAAAGGATTATGTCTTACAATTTCATAATCTTAATGCTAATTTAGATAGGATTTTTGCACCTCCAATGGAGGTTTATGTTTCCCCTTTTCTTTCATCTTCCTTCGATCAAGTTCCAGAGGCCATAGAGGAATGGGCCTCTGAAAATGTGATGGGTCCCGCTGCGCGGCCATTGAGACCTAAAAGTATCGTCATTGAGGGTGATAGTCGTACGGGCAAGACAATGTGGGCCAGGTCTTTGGGACCACACAATTACCTGTGTGGACATTTAGATCTGAGTCGCAAGATATATTCAAATGATGCATGGTATAACATCATTGATGACGTAGACCCCCACTACCTAAAGCATTTTAAAGAGTTCATGGGGGTCCAGAGGGACTGGCAAAGTAACACCAAGTACGGGAAACCAGTTCAAATTAAAGGAGGTATTCCCACTATCTTCCTCTGCAATTCTGGGCCCAATTCCTGCTATAGAGAATACCTCGATGAGGAAAAGAACTCAGCACTGAGGTCGTGGGCTATACATAATGCAACATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCCATCAAGGTCCAACACAGGCTAGCCAAGCGTAG |
|
Protein Sequence
|
MAPPKRFQIYAKNFFLTYPKCSLTKEEALTQLQNLQTPVNKKYIKICRELHENGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDTLDWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALRVIRELAPKDYVLQFHNLNANLDRIFAPPMEVYVSPFLSSSFDQVPEAIEEWASENVMGPAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSRKIYSNDAWYNIIDDVDPHYLKHFKEFMGVQRDWQSNTKYGKPVQIKGGIPTIFLCNSGPNSCYREYLDEEKNSALRSWAIHNATFITLTEPLYSGTHQGPTQASQA |
|
NCBI Accession
|
YP_004021923.1
|
|
Location
|
2128-2430 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATACAAGTGCCAAAATAACAGGTTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGTCAAGCTCAGATGTCAAGTCCTATATGGAGAAGGATGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAGTCAGCCAATGATGCTTACGCCAAAGCAATTAATACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAGGGAATTAG |
|
Protein Sequence
|
MGNLIFTCSSSSKENTSAKITGSSTWYPQPGQHISIRTFRELSQAQMSSPIWRRMETPSTGESFRSMDDLQEGDNSQPMMLTPKQLIQAVSQRLLESLGN |