Papaya leaf crumple virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000887775.1
Isolate India: Haryana
Release date 2015/2/22
Submitter Singh-Pant,P., Pant,P., Mukherjee,S.K., Mazumdar-Leighton,S., Singh,P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_014707
ACCGGATGGCCGCGCAAATTTTTAGGTGGGCCCTCAACCAATGAAATTCACGCTACATGGCCTATTTAGTGCGGGGGGACCAATAAATAGACTTGCTCACCAAGTTTGTATCTACAAACATGTGGGACCCACTATTGAATGAGTTTCCAGAAACTGTTCATGGGTTTAGGTGCATGTTGGCAGTGAAATACCTCCAGCTAGTAGAAAATACGTATTCCCCAGACACTCTGGGATACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTCGGAATTATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGCGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCCTGGACCAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCAAGGGGCTGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGGAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCGTCTATGTATTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCTGTTGACAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGACAGATATCAGGTGTTAAGGAAGTGGCATGCCACTGTGACAGGCGGTTTATACGCACCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTCAATAATTATGTTGTGTACAACTACCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCCGTGTATGCCACTTTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAATAAATATTGAATTTTATATCATGATCCTCAATTACATTAATTGTGCCCTCAAGTACATCATATAATACATGTCTGAAAGCCTTAATACAATTATTTATACTAATTACGCCTAAACTATCTAAATATCTTAAAACTTGAGTCTTAAAGACTCTTAAGAAATGCCAAGTCTGAAGATGTAAACGAGTGTGGATCCTCAAGCCCAAGAAACAATTCATTATCCCCAGTCTCTTCCTGAGGTTGTGATTGAATTGTATCTGAACGGAGATGATGTCTTCCTTCATTAGGAACGGCCTGTTGTGGTGTTCTGTTATCTTGAAATAGAGGGGATTTGGGGTTTCCCAGATATACACGCCATTCATTGCATGACCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATGTGTACGTAGTATGAGCAGCCACACTCGAGGTCAACCCTCTTACGCCGGAAGGCTCTACGCTTGGCTAGCCTGTGTTGGACCTTGATGGGTACCTGAGTACAGTGGCTCTGTGAGGGTGATGAATGTTGCATTATGTATAGCCCACGACCTCAGTGCTGAGTTCTTTTCCTCATCGAGGTATTCTCTATAGCAGGAATTGGGCCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTTTAAAATGCTTTAGGTAGTGGGGGTCTACGTCATCAATGATGTTATACCATGCATCATTTGAATATATCTTGCGACTCAGATCTAAATGTCCACACAGGTAATTGTGTGGTCCCAAAGACCTGGCCCACATTGTCTTGCCCGTACGACTATCACCCTCAATGACGATACTTTTAGGTCTCAATGGCCGCGCAGCGGGACCCATCACATTTTCAGAGGCCCATTCCTCTATGGCCTCTGGAACTTGATCGAAGGAAGATGAAAGAAAAGGGGAAACATAAACCTCCATTGGAGGTGCAAAAATCCTATCTAAATTAGCATTAAGATTATGAAATTGTAAGACATAATCCTTTGGGGCTAATTCCCTAATGACTCTAAGAGCCTCTGACTTACTGCCTGTATTAATTGCTTTGGCGTAAGCATCATTGGCTGACTGTTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCATCCTTCTCCATATAGGACTTGACATCTGAGCTTGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAACCTGTTATTTTGGCACTTGTATTTTCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGGAGCTCTCTGCAGATTTTTATGTATTTTTTATTTACTGGGGTTTGTAGGTTCTGAAGTTGGGTGAGTGCCTCTTCTTTAGTAAGAGAGCATTTTGGATAAGTGAGAAAGAAATTTTTGGCATATATTTGAAAACGCTTGGGAGGAGCCATTGACTTGGTCAATCGGTACTCAGCACTAGTCCTATGGCAATTGGTGATCAGTACTCAATATATAGTGAGTACCAAATGGCAGAATTGTAATTTGGAAAAGAAAATTACTTTAATTCAAATTCCCATAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_004021917.1
Location 120-485
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGACCCACTATTGAATGAGTTTCCAGAAACTGTTCATGGGTTTAGGTGCATGTTGGCAGTGAAATACCTCCAGCTAGTAGAAAATACGTATTCCCCAGACACTCTGGGATACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTCGGAATTATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGCGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCCTGGACCAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCAAGGGGCTGTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYHHFNARLEGTPPSQLRQPICEPRCCPHCPRHKSKGLDQQAHEPKAQDVQDVQEPRCSKGL

NCBI Accession YP_004021918.1
Location 258-548
Gene Name AC5
Protein Name AC5 protein
Coding Region ATGACTTTCCCAATGTGCTGGATATCATGTCTGGACTCAAATGACTGGACCTTACACGGGCCTTCACAGCCCCTTGGAACATCTGGGCTCCTGTACATCCTGTACATCCTGGGCTTTCGGTTCATGGGCCTGTTGGTCCAGGCCCTTGCTTTTGTGACGCGGACAATGGGGGCAGCAGCGCGGCTCGCATATGGGCTGTCGAAGTTGAGACGGCGGCGTACCTTCGAGGCGGGCGTTGAAATGATGATATCTGCTGGTCGCTTCGACATAATTCCGAGCCCTAATAACTGA
Protein Sequence MTFPMCWISCLDSNDWTLHGPSQPLGTSGLLYILYILGFRFMGLLVQALAFVTRTMGAAARLAYGLSKLRRRRTFEAGVEMMISAGRFDIIPSPNN

NCBI Accession YP_004021919.1
Location 280-1050
Gene Name AV1
Protein Name AV1 protein
Coding Region ATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGCGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCCTGGACCAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCAAGGGGCTGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGGAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCGTCTATGTATTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCTGTTGACAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGACAGATATCAGGTGTTAAGGAAGTGGCATGCCACTGTGACAGGCGGTTTATACGCACCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTCAATAATTATGTTGTGTACAACTACCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCCGTGTATGCCACTTTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGLYAPKEQALVKKFIRVNNYVVYNYQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_004021920.1
Location 1047-1451
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGAATCCATCACTGCAGGTCATGCAATGAATGGCGTGTATATCTGGGAAACCCCAAATCCCCTCTATTTCAAGATAACAGAACACCACAACAGGCCGTTCCTAATGAAGGAAGACATCATCTCCGTTCAGATACAATTCAATCACAACCTCAGGAAGAGACTGGGGATAATGAATTGTTTCTTGGGCTTGAGGATCCACACTCGTTTACATCTTCAGACTTGGCATTTCTTAAGAGTCTTTAAGACTCAAGTTTTAAGATATTTAGATAGTTTAGGCGTAATTAGTATAAATAATTGTATTAAGGCTTTCAGACATGTATTATATGATGTACTTGAGGGCACAATTAATGTAATTGAGGATCATGATATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGESITAGHAMNGVYIWETPNPLYFKITEHHNRPFLMKEDIISVQIQFNHNLRKRLGIMNCFLGLRIHTRLHLQTWHFLRVFKTQVLRYLDSLGVISINNCIKAFRHVLYDVLEGTINVIEDHDIKFNIY

NCBI Accession YP_004021921.1
Location 1192-1599
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCAACATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCCATCAAGGTCCAACACAGGCTAGCCAAGCGTAGAGCCTTCCGGCGTAAGAGGGTTGACCTCGAGTGTGGCTGCTCATACTACGTACACATCAACTGCCACAACCATGGATTCACGCACAGGGGAATCCATCACTGCAGGTCATGCAATGAATGGCGTGTATATCTGGGAAACCCCAAATCCCCTCTATTTCAAGATAACAGAACACCACAACAGGCCGTTCCTAATGAAGGAAGACATCATCTCCGTTCAGATACAATTCAATCACAACCTCAGGAAGAGACTGGGGATAATGAATTGTTTCTTGGGCTTGAGGATCCACACTCGTTTACATCTTCAGACTTGGCATTTCTTAAGAGTCTTTAA
Protein Sequence MQHSSPSQSHCTQVPIKVQHRLAKRRAFRRKRVDLECGCSYYVHINCHNHGFTHRGIHHCRSCNEWRVYLGNPKSPLFQDNRTPQQAVPNEGRHHLRSDTIQSQPQEETGDNELFLGLEDPHSFTSSDLAFLKSL

NCBI Accession YP_004021922.1
Location 1523-2587
Gene Name AC1
Protein Name AC1 protein
Coding Region ATGGCTCCTCCCAAGCGTTTTCAAATATATGCCAAAAATTTCTTTCTCACTTATCCAAAATGCTCTCTTACTAAAGAAGAGGCACTCACCCAACTTCAGAACCTACAAACCCCAGTAAATAAAAAATACATAAAAATCTGCAGAGAGCTCCACGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATACAAGTGCCAAAATAACAGGTTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGTCAAGCTCAGATGTCAAGTCCTATATGGAGAAGGATGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAGTCAGCCAATGATGCTTACGCCAAAGCAATTAATACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAGGGAATTAGCCCCAAAGGATTATGTCTTACAATTTCATAATCTTAATGCTAATTTAGATAGGATTTTTGCACCTCCAATGGAGGTTTATGTTTCCCCTTTTCTTTCATCTTCCTTCGATCAAGTTCCAGAGGCCATAGAGGAATGGGCCTCTGAAAATGTGATGGGTCCCGCTGCGCGGCCATTGAGACCTAAAAGTATCGTCATTGAGGGTGATAGTCGTACGGGCAAGACAATGTGGGCCAGGTCTTTGGGACCACACAATTACCTGTGTGGACATTTAGATCTGAGTCGCAAGATATATTCAAATGATGCATGGTATAACATCATTGATGACGTAGACCCCCACTACCTAAAGCATTTTAAAGAGTTCATGGGGGTCCAGAGGGACTGGCAAAGTAACACCAAGTACGGGAAACCAGTTCAAATTAAAGGAGGTATTCCCACTATCTTCCTCTGCAATTCTGGGCCCAATTCCTGCTATAGAGAATACCTCGATGAGGAAAAGAACTCAGCACTGAGGTCGTGGGCTATACATAATGCAACATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCCATCAAGGTCCAACACAGGCTAGCCAAGCGTAG
Protein Sequence MAPPKRFQIYAKNFFLTYPKCSLTKEEALTQLQNLQTPVNKKYIKICRELHENGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDTLDWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALRVIRELAPKDYVLQFHNLNANLDRIFAPPMEVYVSPFLSSSFDQVPEAIEEWASENVMGPAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSRKIYSNDAWYNIIDDVDPHYLKHFKEFMGVQRDWQSNTKYGKPVQIKGGIPTIFLCNSGPNSCYREYLDEEKNSALRSWAIHNATFITLTEPLYSGTHQGPTQASQA

NCBI Accession YP_004021923.1
Location 2128-2430
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATACAAGTGCCAAAATAACAGGTTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGTCAAGCTCAGATGTCAAGTCCTATATGGAGAAGGATGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAGTCAGCCAATGATGCTTACGCCAAAGCAATTAATACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAGGGAATTAG
Protein Sequence MGNLIFTCSSSSKENTSAKITGSSTWYPQPGQHISIRTFRELSQAQMSSPIWRRMETPSTGESFRSMDDLQEGDNSQPMMLTPKQLIQAVSQRLLESLGN

References More References in PubMed

1

Cucurbit leaf crumple virus Identified in Common Bean in Florida.

Adkins S, et al.  Plant Dis. 2009 Mar;93(3):320. doi: 10.1094/PDIS-93-3-0320B.

PMID: 30764208
2

First Report of Papaya Leaf Curl Disease in Pakistan.

Nadeem A, et al.  Plant Dis. 1997 Nov;81(11):1333. doi: 10.1094/PDIS.1997.81.11.1333B.

PMID: 30861752
3

First Report of Tomato leaf curl Palampur virus on Bitter Gourd in Pakistan.

Ali I, et al.  Plant Dis. 2010 Feb;94(2):276. doi: 10.1094/PDIS-94-2-0276A.

PMID: 30754274
4

Melon chlorotic leaf curl virus: characterization and differential reassortment with closest relatives reveal adaptive virulence in the squash leaf curl virus clade and host shifting by the host-restricted bean calico mosaic virus.

Idris AM, et al.  J Virol. 2008 Feb;82(4):1959-67. doi: 10.1128/JVI.01992-07. Epub 2007 Dec 5.

PMID: 18057231
5

Complete nucleotide sequences of two begomoviruses infecting Madagascar periwinkle (Catharanthus roseus) from Pakistan.

Ilyas M, et al.  Arch Virol. 2013 Feb;158(2):505-10. doi: 10.1007/s00705-012-1498-1. Epub 2012 Oct 12.

PMID: 23065111
6

Spatial and temporal diversity of begomoviral complexes in papayas with leaf curl disease.

Singh-Pant P, et al.  Arch Virol. 2012 Jul;157(7):1217-32. doi: 10.1007/s00705-012-1287-x. Epub 2012 Mar 22.

PMID: 22437254
7

Distribution of four viruses in single and mixed infections within infected watermelon plants in Florida.

Turechek WW, et al.  Phytopathology. 2010 Nov;100(11):1194-203. doi: 10.1094/PHYTO-01-10-0018.

PMID: 20649418