Okra yellow mosaic Mexico virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000889735.1
Isolate Mexico: Morelos
Release date 2015/2/22
Submitter De La Torre-Almaraz,R., Monsalvo-Reyes,A., Ambriz-Granados,S., Arguello-Astorga,G.R., Monsalvo-Reyes,R., De la Torre-Almaraz,R., Mauricio-Castillo,J.A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_014066
ACCGGATGGCCGCGCGATTTTTTTGCCCCCTCGTGCGTTCGCCTCTCTTTAATTTGAATTAAAGCGTTCCGCTTTCGTCTCGTCCAATCAGGTAACGTCTGACGAGCTAAGATATTTCAAACAACTTGGGCGCCAAGTTGTTGGGTTTCGGTTATAAATTAAAGAGGCTTTGGCCCACTGGATTTAATTCAAAATGCCTAAGCGCGATCTCCCATGGCGCTCGATCGCGGGAACCTCAAAGGTGAGCCGCAATGCTAATTATTCTCCTCGTGCAGGAAGTGGGCCAAGAGTTAACAAGGCCTCTGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGGACAATGAGAACGCCCGACGTGCCAAGAGGCTGTGAAGGGCCTTGCAAGGTCCAGTCCTTTGAACAGCGTCATGATGTCTCTCACGTGGGTAAGGTCATTTGTATATCTGATGTGACACGTGGTAATGGTATCACTCACCGTGTAGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATCCTCGGTAAGATCTGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGCACGCCCATGGATTTCGGGCAAGTGTTCAACATGTTCGACAACGAGCCTAGCACTGCCACGGTGAAGAACGACCTACGCGACCGCTACCAGGTGATGCACAAGTTTTACGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCGATAGTCAAGCGCTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAATGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCAACGCTTAAGATTCGGATCTACTTCTACGATTCGATCATGAATTAATAAAGTTTAAATTTTATTGAATGATTTTCCAGCACATAATTTACATAAGATCTATCCGTTGCGAAACGAACAGCTCTGATTACATTGTTAAGTGAAATTACGCCTAATCGATCTAAATACAAATTAACTAAGTGCATAAACCTAGCTAAATAAGTCGACCCAGAAGCTGTCATCGATGTCGTCCAGACTTGGAAGTTCAGGTAGGCCTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATTTGTACGTGGTATACTCTGGTCCTCGTGTATAGTGGATCTTCTACTCGGTACATCTTGAAATACAGGGGATTTTCTATCTCCCAGATATAGACGCCATTCTCGCTCTGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGACCCGTACAGCCTATGTGTAAGTATATGGAGCACCCGCACTCCAGATCAATCCGCCTCCTCCTGATGGCTCTCCTCTTGGCTTGCCTGTGTGCTGTCTTGATAGAGGGCGGATGTGAGGGTGATGAAGAGCGCATTCTTGATGGTCCAGTTCCTGAGTGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAGCTTGCACCCTCACCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATAGACTCGTGGGTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTAGCGCACGTGCCCACATTGTCTTTCCGGTCCTCGAATCACCTTCAACGATGATACTAACTGGTCTCTCAGGCCGCGCAGCGGGATCCCTTCCAAAATATTCATCGACCCACTCTTGCATCTCGTCAGGCACGTTAGTGAACGAGGAGAGTTGAAACGGAGGGACCCATGGTTCCGGAGCCTTTTGGAATATTTTGGTGGCGTTGGCGACGAGGTTGTGGTGCTGAAGGAAGAAATGTTGCGGTTGTTCTTCTTTGATAATACGCAGCGCTTCCTCCGCCGACGATGCATTCAACGCCTTGGCATATGTATCGTTAGCTGATTGCTGGCCTCCTCTAGCAGATCTGCCGTCGATCTGAAATTCTCCCCATTCGATTGTATCTCCGTCCTTGTCGATATAGGATTTGACGTCGGAGCTGGATTTAGTTCCCTGAATGTTCGGATGGAAATGTGCTGACCGACTTGGGGACACCAGGTCGAAGAATCTGTTATTCGTGCATCTGTATTTCCCCTCGAACTGGATAAGGACGTGCAGATGAGGTTGCCCATCTTCGTGAAGTTCTCTGCAGATTTTGATGAATTTCTTGTTGACCGGAGTGTTTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGTAAGAGAACACTGTGGATATGTGAGGAAATAGTTTTTCTGATTTATCTGAAATCGTTTAGGCGGTGGCATATTTGTAAATAAGAGAGTGTGTACCAATTGAGCTCTCTCAAAACTTAGCAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTAACGGATTTGTGACACTTGGCGGCCATCCGCTATAATATT

Gene Information

NCBI Accession YP_003587818.1
Location 194-949
Gene Name cp
Protein Name coat protein
Coding Region ATGCCTAAGCGCGATCTCCCATGGCGCTCGATCGCGGGAACCTCAAAGGTGAGCCGCAATGCTAATTATTCTCCTCGTGCAGGAAGTGGGCCAAGAGTTAACAAGGCCTCTGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGGACAATGAGAACGCCCGACGTGCCAAGAGGCTGTGAAGGGCCTTGCAAGGTCCAGTCCTTTGAACAGCGTCATGATGTCTCTCACGTGGGTAAGGTCATTTGTATATCTGATGTGACACGTGGTAATGGTATCACTCACCGTGTAGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATCCTCGGTAAGATCTGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGCACGCCCATGGATTTCGGGCAAGTGTTCAACATGTTCGACAACGAGCCTAGCACTGCCACGGTGAAGAACGACCTACGCGACCGCTACCAGGTGATGCACAAGTTTTACGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCGATAGTCAAGCGCTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAATGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCAACGCTTAAGATTCGGATCTACTTCTACGATTCGATCATGAATTAA
Protein Sequence MPKRDLPWRSIAGTSKVSRNANYSPRAGSGPRVNKASEWVNRPMYRKPRIYRTMRTPDVPRGCEGPCKVQSFEQRHDVSHVGKVICISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN

NCBI Accession YP_003587819.1
Location 946-1344
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGAGCGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATGTACCGAGTAGAAGATCCACTATACACGAGGACCAGAGTATACCACGTACAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAGGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCGACTTATTTAGCTAGGTTTATGCACTTAGTTAATTTGTATTTAGATCGATTAGGCGTAATTTCACTTAACAATGTAATCAGAGCTGTTCGTTTCGCAACGGATAGATCTTATGTAAATTATGTGCTGGAAAATCATTCAATAAAATTTAAACTTTATTAA
Protein Sequence MDSRTGELITAPQSENGVYIWEIENPLYFKMYRVEDPLYTRTRVYHVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLARFMHLVNLYLDRLGVISLNNVIRAVRFATDRSYVNYVLENHSIKFKLY

NCBI Accession YP_003587820.1
Location 1091-1480
Gene Name AC2
Protein Name transcription activator protein
Coding Region ATGCGCTCTTCATCACCCTCACATCCGCCCTCTATCAAGACAGCACACAGGCAAGCCAAGAGGAGAGCCATCAGGAGGAGGCGGATTGATCTGGAGTGCGGGTGCTCCATATACTTACACATAGGCTGTACGGGTCATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGAGCGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATGTACCGAGTAGAAGATCCACTATACACGAGGACCAGAGTATACCACGTACAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAGGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCGACTTATTTAGCTAG
Protein Sequence MRSSSPSHPPSIKTAHRQAKRRAIRRRRIDLECGCSIYLHIGCTGHGFTHRGTHHCTSEREWRLYLGDRKSPVFQDVPSRRSTIHEDQSIPRTNTVQPQPEESVASPQGLPELPSLDDIDDSFWVDLFS

NCBI Accession YP_003587821.1
Location 1392-2477
Gene Name AC1
Protein Name replication initiator protein
Coding Region ATGCCACCGCCTAAACGATTTCAGATAAATCAGAAAAACTATTTCCTCACATATCCACAGTGTTCTCTTACAAAAGAAGAGGCACTTTCCCAATTACAAAACCTAAACACTCCGGTCAACAAGAAATTCATCAAAATCTGCAGAGAACTTCACGAAGATGGGCAACCTCATCTGCACGTCCTTATCCAGTTCGAGGGGAAATACAGATGCACGAATAACAGATTCTTCGACCTGGTGTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAACTAAATCCAGCTCCGACGTCAAATCCTATATCGACAAGGACGGAGATACAATCGAATGGGGAGAATTTCAGATCGACGGCAGATCTGCTAGAGGAGGCCAGCAATCAGCTAACGATACATATGCCAAGGCGTTGAATGCATCGTCGGCGGAGGAAGCGCTGCGTATTATCAAAGAAGAACAACCGCAACATTTCTTCCTTCAGCACCACAACCTCGTCGCCAACGCCACCAAAATATTCCAAAAGGCTCCGGAACCATGGGTCCCTCCGTTTCAACTCTCCTCGTTCACTAACGTGCCTGACGAGATGCAAGAGTGGGTCGATGAATATTTTGGAAGGGATCCCGCTGCGCGGCCTGAGAGACCAGTTAGTATCATCGTTGAAGGTGATTCGAGGACCGGAAAGACAATGTGGGCACGTGCGCTAGGCCCACATAACTACCTCAGTGGACACCTGGACTTCAACCCACGAGTCTATTCAAACGAAGTGGAGTATAACGTCATTGACGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTGATCGGGGCCCAAAAGGATTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGTATCCCATCAATCGTGCTTTGCAATCCAGGTGAGGGTGCAAGCTATAAAGATTTCCTCGACAAAGAGGAAAACGCATCACTCAGGAACTGGACCATCAAGAATGCGCTCTTCATCACCCTCACATCCGCCCTCTATCAAGACAGCACACAGGCAAGCCAAGAGGAGAGCCATCAGGAGGAGGCGGATTGA
Protein Sequence MPPPKRFQINQKNYFLTYPQCSLTKEEALSQLQNLNTPVNKKFIKICRELHEDGQPHLHVLIQFEGKYRCTNNRFFDLVSPSRSAHFHPNIQGTKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQSANDTYAKALNASSAEEALRIIKEEQPQHFFLQHHNLVANATKIFQKAPEPWVPPFQLSSFTNVPDEMQEWVDEYFGRDPAARPERPVSIIVEGDSRTGKTMWARALGPHNYLSGHLDFNPRVYSNEVEYNVIDDVAPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLRNWTIKNALFITLTSALYQDSTQASQEESHQEEAD

NCBI Accession YP_003587822.1
Location 2063-2320
Gene Name AC4
Protein Name AC4
Coding Region ATGGGCAACCTCATCTGCACGTCCTTATCCAGTTCGAGGGGAAATACAGATGCACGAATAACAGATTCTTCGACCTGGTGTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAACTAAATCCAGCTCCGACGTCAAATCCTATATCGACAAGGACGGAGATACAATCGAATGGGGAGAATTTCAGATCGACGGCAGATCTGCTAGAGGAGGCCAGCAATCAGCTAACGATACATATGCCAAGGCGTTGA
Protein Sequence MGNLICTSLSSSRGNTDARITDSSTWCPQVGQHISIRTFRELNPAPTSNPISTRTEIQSNGENFRSTADLLEEASNQLTIHMPRR

References More References in PubMed

1

First Report of Okra yellow mosaic Mexico virus in Okra in the United States.

Hernandez-Zepeda C, et al.  Plant Dis. 2010 Jul;94(7):924. doi: 10.1094/PDIS-94-7-0924B.

PMID: 30743573
2

A New Begomovirus Inducing Yellow Mottle in Okra Crops in Mexico is Related to Sida yellow vein virus.

De La Torre-Almaraz R, et al.  Plant Dis. 2006 Mar;90(3):378. doi: 10.1094/PD-90-0378B.

PMID: 30786574
3

First Report of a Geminivirus Inducing Yellow Mottle in Okra (Abelmoschus esculentus) in Mexico.

De La Torre-Almaráz R, et al.  Plant Dis. 2003 Feb;87(2):202. doi: 10.1094/PDIS.2003.87.2.202B.

PMID: 30812935
4

Sida chlorotic leaf virus: a new recombinant begomovirus found in non-cultivated plants and Cucumis sativus L.

García-Rodríguez DA, et al.  PeerJ. 2023 Mar 22;11:e15047. doi: 10.7717/peerj.15047. eCollection 2023.

PMID: 36974135
5

Molecular characterization and phylogenetic relationships of two new bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico.

Hernández-Zepeda C, et al.  Virus Genes. 2007 Oct;35(2):369-77. doi: 10.1007/s11262-007-0080-5. Epub 2007 Feb 15.

PMID: 17638064
6

Preliminary identification and coat protein gene phylogenetic relationships of begomoviruses associated with native flora and cultivated plants from the Yucatan Peninsula of Mexico.

Hernández-Zepeda C, et al.  Virus Genes. 2007 Dec;35(3):825-33. doi: 10.1007/s11262-007-0149-1. Epub 2007 Aug 8.

PMID: 17682933