Okra yellow crinkle virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000867665.1 |
| Isolate |
Mali |
| Release date |
2015/2/13 |
| Submitter |
Shih,S.L., Green,S.K., Tsai,W.S., Lee,L.M., Levasseur,V. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGTGGGCGCGAAAAAAAAAGGTGGTCCCCGCCCCACGTGAACATGTCGCGCGAGTGCTGAACATGTCGCGCGATCCCTTCCAATCAGAATAAAGCCTGAAAGCTATGTTAAGGACATTTTGTCCTTAAATACTTCGGCCCCAAGTATTAGATTTACAACATGTGGGATCCATTAGTCAACGAGTTCCCCGAATCTGTGCATGGGTTTCGTTGTATGCTTGCAATAAAATATTTGCAGGCTTTAGAGGATACTTACGAGCCCAACACTTTGGGGTCTGATTTAATTAGAGATTTAATATCTGTGATTAGAGCGAAGAATTATGTCGAAGCGACCAGGAGATATAATTATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTACACGAGCCGTGCAACTGTCCCCACTGTCCTAGGCACAAGCAAACGTCTGTCATGGACTTACCGGCCAATGTACAGAAAGCCCAGAATGTACCGGATGTACAGAAGCCCTGATGTTCCTCGAGGATGTGAAGGTCCATGTAAGATCCAATCATTTGACCAACGTGACTCTGTAACCCATACAGGTAATTCGAGATGTCTAAGTGATGTCACAAGAGGTAATGGGCTTACTCATCGTACAGGTAAACGTTTTGTTATCAAGTCTGTTTACATATTAGGTAAGGTTTGGATGGACGAGAATGTTAAGAAGTCCAATCACACAAACACGTGTATGTTCTGGTTAGTTAGAGATAGACGTCCATATGGTAATAGCCCACAAGATTTTGGACAGGTATTTAATATGTTTGATAATGAGCCCAGCACTGCAACGGTTATGAACGACAAGCGTGACCGTTATCAGGTTTTAAAGAGGTTTCAAGCAACTGTTACTGGAGGACCGTCTGGTTGCAAAGAGGCTGCTATTGTTAGGCGTTTTTTCAAGATAAACCATCATGTCACTTACAATCATCAGGAAGCAGCCAAATATGAGAATCATACGGAGAATGCTTTACTACTGTATATGGCATGTACCCATGCGTCAAATCCAGTATATGCGAGTCTTAAAATACGAATGTATTTCTATGATTCAGTCAGCAATTAATAAATATCGAATTTTATTTCATGACTTTCTGTTACATCTATTGTATTTAGTAGTACTGAATACAGAACATGGGCAACTGCTCTAATCACTAAATTAATTGAAATTACACCCAAATTATTTAAGTATTTTAGAACCTGTGTTCTAAATACCCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGACCCTGAAGTTGAGAAAACACTTGTGAATCCCCAATGCCTTCCGAAGGTTGTGGTTGAACCGGATTTGGACATCTATTATATGAAACGGCCGGTTGAACGGGTGTATTAGGTGTCTTGTGATCTTGAAATATAGGGGATTTGGTGTCTCCCAGATAAAAACGCCATTCGTTGTCTGACGAGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTGGCGCAGTTTATGTGTAGGTAGTATGAGCATCCACACTTGAGGTCGATTCGTCTACGCCTCACTACCTTCTTCTTGGCTATGCGGTGCTGGACTTTGATCGGTAGTTGAGTAGAGTGGCTCGCTGAGGGTGATGAATGTTGCATTTTTAATTGCCCAGGCTTTCAATGCAGCATTTTTATCTTCTTCGAGATATTCTTTATAGGAAGCCGTTGGCCCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTTTGAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTGAATAGACCCTTGGGCTAAGATCTATATGACCACATAGATAATTATGTGGGCCTAAGGACCTAGCCCACATTGTCTTCCCTGTTCTACTATCACCCTCAACAACTATACTTTGAGGTCTCCAGGGCCGCGCAGCGGCACCAACGACGTTCTCAGCTGCCCATTCTTCTAGTTCTTCGGGAACATTATTAAAAGAAGAAGACGAAAAAGGAGAAACATAAACTTCGGGCGGAGCCTGAAAGATTCTATCTAAGTTTGACTTTAAATTATGATATTGGAAAATATAATCTTTAGGGAGTTTTTCCCTAATAATTGCCATAGCAGCATCAGCGGAACCTGCATTCAATGCCTCTGCTGCAGCGTCGTTAGCAGTCTGGCAGCCTCCCCTAGCACTTCTTCCGTCGACCTGGAACTCTCCCCATTCCAGGGTGTCGCCGTCCTTGTCGATGTAGGACTTGACGTCCGAGCTAGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTACTTGGGGAGACCAGGTCGAAGAATCTCTGATTTGTGCAGTTGTATTTGCCCTCGAACTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCATGTAACTCACGGCAGATTTTAATATATTTTTTATTTGTAGGGGTTTGTAAATCTTTGAGTTGCCCTAATGCGTCTTCTTTAGACAGAGAGCATTTTGGGAAAGTGAGAAAATAATTTTTGGCCTTAATGCTAAAACGACCAGCTCTGGGCATCTTGAATGTCGTTTAGCAATCGGGGGGCACTCAAAGTCTGGTGAATCGGGGGAACTGGGGGGCAATTTATATGTGCCCCCCAAATGGCATTCTCGTAATTTTGTAAAGAAACTTACTTTAATTCAAATTCCACATAGCGCCCACCGTTTTAATATT
Gene Information
|
NCBI Accession
|
YP_764512.1
|
|
Location
|
163-513 |
|
Gene Name
|
V2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCATTAGTCAACGAGTTCCCCGAATCTGTGCATGGGTTTCGTTGTATGCTTGCAATAAAATATTTGCAGGCTTTAGAGGATACTTACGAGCCCAACACTTTGGGGTCTGATTTAATTAGAGATTTAATATCTGTGATTAGAGCGAAGAATTATGTCGAAGCGACCAGGAGATATAATTATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTACACGAGCCGTGCAACTGTCCCCACTGTCCTAGGCACAAGCAAACGTCTGTCATGGACTTACCGGCCAATGTACAGAAAGCCCAGAATGTACCGGATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLVNEFPESVHGFRCMLAIKYLQALEDTYEPNTLGSDLIRDLISVIRAKNYVEATRRYNYFHARLEGSSKAELRQPLHEPCNCPHCPRHKQTSVMDLPANVQKAQNVPDVQKP |
|
NCBI Accession
|
YP_764513.1
|
|
Location
|
323-1099 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGGAGATATAATTATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTACACGAGCCGTGCAACTGTCCCCACTGTCCTAGGCACAAGCAAACGTCTGTCATGGACTTACCGGCCAATGTACAGAAAGCCCAGAATGTACCGGATGTACAGAAGCCCTGATGTTCCTCGAGGATGTGAAGGTCCATGTAAGATCCAATCATTTGACCAACGTGACTCTGTAACCCATACAGGTAATTCGAGATGTCTAAGTGATGTCACAAGAGGTAATGGGCTTACTCATCGTACAGGTAAACGTTTTGTTATCAAGTCTGTTTACATATTAGGTAAGGTTTGGATGGACGAGAATGTTAAGAAGTCCAATCACACAAACACGTGTATGTTCTGGTTAGTTAGAGATAGACGTCCATATGGTAATAGCCCACAAGATTTTGGACAGGTATTTAATATGTTTGATAATGAGCCCAGCACTGCAACGGTTATGAACGACAAGCGTGACCGTTATCAGGTTTTAAAGAGGTTTCAAGCAACTGTTACTGGAGGACCGTCTGGTTGCAAAGAGGCTGCTATTGTTAGGCGTTTTTTCAAGATAAACCATCATGTCACTTACAATCATCAGGAAGCAGCCAAATATGAGAATCATACGGAGAATGCTTTACTACTGTATATGGCATGTACCCATGCGTCAAATCCAGTATATGCGAGTCTTAAAATACGAATGTATTTCTATGATTCAGTCAGCAATTAA |
|
Protein Sequence
|
MSKRPGDIIISTPVSKVRRRLNFDSPYTSRATVPTVLGTSKRLSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKIQSFDQRDSVTHTGNSRCLSDVTRGNGLTHRTGKRFVIKSVYILGKVWMDENVKKSNHTNTCMFWLVRDRRPYGNSPQDFGQVFNMFDNEPSTATVMNDKRDRYQVLKRFQATVTGGPSGCKEAAIVRRFFKINHHVTYNHQEAAKYENHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN |
|
NCBI Accession
|
YP_764514.1
|
|
Location
|
1096-1500 |
|
Gene Name
|
C3 |
|
Protein Name
|
replication enhancement protein |
|
Coding Region
|
ATGGATTCTCGCACAGGGGAACTCATCACTGCTCGTCAGACAACGAATGGCGTTTTTATCTGGGAGACACCAAATCCCCTATATTTCAAGATCACAAGACACCTAATACACCCGTTCAACCGGCCGTTTCATATAATAGATGTCCAAATCCGGTTCAACCACAACCTTCGGAAGGCATTGGGGATTCACAAGTGTTTTCTCAACTTCAGGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAGAACACAGGTTCTAAAATACTTAAATAATTTGGGTGTAATTTCAATTAATTTAGTGATTAGAGCAGTTGCCCATGTTCTGTATTCAGTACTACTAAATACAATAGATGTAACAGAAAGTCATGAAATAAAATTCGATATTTATTAA |
|
Protein Sequence
|
MDSRTGELITARQTTNGVFIWETPNPLYFKITRHLIHPFNRPFHIIDVQIRFNHNLRKALGIHKCFLNFRVWTTLRPQTGRFLRVFRTQVLKYLNNLGVISINLVIRAVAHVLYSVLLNTIDVTESHEIKFDIY |
|
NCBI Accession
|
YP_764515.1
|
|
Location
|
1241-1648 |
|
Gene Name
|
C2 |
|
Protein Name
|
transcriptional activation protein |
|
Coding Region
|
ATGCAACATTCATCACCCTCAGCGAGCCACTCTACTCAACTACCGATCAAAGTCCAGCACCGCATAGCCAAGAAGAAGGTAGTGAGGCGTAGACGAATCGACCTCAAGTGTGGATGCTCATACTACCTACACATAAACTGCGCCAACCATGGATTCTCGCACAGGGGAACTCATCACTGCTCGTCAGACAACGAATGGCGTTTTTATCTGGGAGACACCAAATCCCCTATATTTCAAGATCACAAGACACCTAATACACCCGTTCAACCGGCCGTTTCATATAATAGATGTCCAAATCCGGTTCAACCACAACCTTCGGAAGGCATTGGGGATTCACAAGTGTTTTCTCAACTTCAGGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAG |
|
Protein Sequence
|
MQHSSPSASHSTQLPIKVQHRIAKKKVVRRRRIDLKCGCSYYLHINCANHGFSHRGTHHCSSDNEWRFYLGDTKSPIFQDHKTPNTPVQPAVSYNRCPNPVQPQPSEGIGDSQVFSQLQGLDDLTASDWSFLKGI |
|
NCBI Accession
|
YP_764516.1
|
|
Location
|
1557-2636 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCCAGAGCTGGTCGTTTTAGCATTAAGGCCAAAAATTATTTTCTCACTTTCCCAAAATGCTCTCTGTCTAAAGAAGACGCATTAGGGCAACTCAAAGATTTACAAACCCCTACAAATAAAAAATATATTAAAATCTGCCGTGAGTTACATGAGAATGGGGAACCACATCTCCATGTGCTTATCCAGTTCGAGGGCAAATACAACTGCACAAATCAGAGATTCTTCGACCTGGTCTCCCCAAGTAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCGGACGTCAAGTCCTACATCGACAAGGACGGCGACACCCTGGAATGGGGAGAGTTCCAGGTCGACGGAAGAAGTGCTAGGGGAGGCTGCCAGACTGCTAACGACGCTGCAGCAGAGGCATTGAATGCAGGTTCCGCTGATGCTGCTATGGCAATTATTAGGGAAAAACTCCCTAAAGATTATATTTTCCAATATCATAATTTAAAGTCAAACTTAGATAGAATCTTTCAGGCTCCGCCCGAAGTTTATGTTTCTCCTTTTTCGTCTTCTTCTTTTAATAATGTTCCCGAAGAACTAGAAGAATGGGCAGCTGAGAACGTCGTTGGTGCCGCTGCGCGGCCCTGGAGACCTCAAAGTATAGTTGTTGAGGGTGATAGTAGAACAGGGAAGACAATGTGGGCTAGGTCCTTAGGCCCACATAATTATCTATGTGGTCATATAGATCTTAGCCCAAGGGTCTATTCAAATGAAGCATGGTATAACGTCATAGATGATGTTGACCCGCATTATCTCAAACACTTTAAAGAATTCATGGGGGCCCAGAGGGACTGGCAGAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCAACAATCTTCCTCTGCAATCCTGGGCCAACGGCTTCCTATAAAGAATATCTCGAAGAAGATAAAAATGCTGCATTGAAAGCCTGGGCAATTAAAAATGCAACATTCATCACCCTCAGCGAGCCACTCTACTCAACTACCGATCAAAGTCCAGCACCGCATAGCCAAGAAGAAGGTAGTGAGGCGTAG |
|
Protein Sequence
|
MPRAGRFSIKAKNYFLTFPKCSLSKEDALGQLKDLQTPTNKKYIKICRELHENGEPHLHVLIQFEGKYNCTNQRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGCQTANDAAAEALNAGSADAAMAIIREKLPKDYIFQYHNLKSNLDRIFQAPPEVYVSPFSSSSFNNVPEELEEWAAENVVGAAARPWRPQSIVVEGDSRTGKTMWARSLGPHNYLCGHIDLSPRVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTASYKEYLEEDKNAALKAWAIKNATFITLSEPLYSTTDQSPAPHSQEEGSEA |
|
NCBI Accession
|
YP_764517.1
|
|
Location
|
2222-2485 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGAGAATGGGGAACCACATCTCCATGTGCTTATCCAGTTCGAGGGCAAATACAACTGCACAAATCAGAGATTCTTCGACCTGGTCTCCCCAAGTAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCGGACGTCAAGTCCTACATCGACAAGGACGGCGACACCCTGGAATGGGGAGAGTTCCAGGTCGACGGAAGAAGTGCTAGGGGAGGCTGCCAGACTGCTAACGACGCTGCAGCAGAGGCATTGA |
|
Protein Sequence
|
MRMGNHISMCLSSSRANTTAQIRDSSTWSPQVGQHISIRTFRELSLARTSSPTSTRTATPWNGESSRSTEEVLGEAARLLTTLQQRH |