Okra yellow crinkle virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000867665.1
Isolate Mali
Release date 2015/2/13
Submitter Shih,S.L., Green,S.K., Tsai,W.S., Lee,L.M., Levasseur,V.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_008377
ACCGGTGGGCGCGAAAAAAAAAGGTGGTCCCCGCCCCACGTGAACATGTCGCGCGAGTGCTGAACATGTCGCGCGATCCCTTCCAATCAGAATAAAGCCTGAAAGCTATGTTAAGGACATTTTGTCCTTAAATACTTCGGCCCCAAGTATTAGATTTACAACATGTGGGATCCATTAGTCAACGAGTTCCCCGAATCTGTGCATGGGTTTCGTTGTATGCTTGCAATAAAATATTTGCAGGCTTTAGAGGATACTTACGAGCCCAACACTTTGGGGTCTGATTTAATTAGAGATTTAATATCTGTGATTAGAGCGAAGAATTATGTCGAAGCGACCAGGAGATATAATTATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTACACGAGCCGTGCAACTGTCCCCACTGTCCTAGGCACAAGCAAACGTCTGTCATGGACTTACCGGCCAATGTACAGAAAGCCCAGAATGTACCGGATGTACAGAAGCCCTGATGTTCCTCGAGGATGTGAAGGTCCATGTAAGATCCAATCATTTGACCAACGTGACTCTGTAACCCATACAGGTAATTCGAGATGTCTAAGTGATGTCACAAGAGGTAATGGGCTTACTCATCGTACAGGTAAACGTTTTGTTATCAAGTCTGTTTACATATTAGGTAAGGTTTGGATGGACGAGAATGTTAAGAAGTCCAATCACACAAACACGTGTATGTTCTGGTTAGTTAGAGATAGACGTCCATATGGTAATAGCCCACAAGATTTTGGACAGGTATTTAATATGTTTGATAATGAGCCCAGCACTGCAACGGTTATGAACGACAAGCGTGACCGTTATCAGGTTTTAAAGAGGTTTCAAGCAACTGTTACTGGAGGACCGTCTGGTTGCAAAGAGGCTGCTATTGTTAGGCGTTTTTTCAAGATAAACCATCATGTCACTTACAATCATCAGGAAGCAGCCAAATATGAGAATCATACGGAGAATGCTTTACTACTGTATATGGCATGTACCCATGCGTCAAATCCAGTATATGCGAGTCTTAAAATACGAATGTATTTCTATGATTCAGTCAGCAATTAATAAATATCGAATTTTATTTCATGACTTTCTGTTACATCTATTGTATTTAGTAGTACTGAATACAGAACATGGGCAACTGCTCTAATCACTAAATTAATTGAAATTACACCCAAATTATTTAAGTATTTTAGAACCTGTGTTCTAAATACCCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGACCCTGAAGTTGAGAAAACACTTGTGAATCCCCAATGCCTTCCGAAGGTTGTGGTTGAACCGGATTTGGACATCTATTATATGAAACGGCCGGTTGAACGGGTGTATTAGGTGTCTTGTGATCTTGAAATATAGGGGATTTGGTGTCTCCCAGATAAAAACGCCATTCGTTGTCTGACGAGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTGGCGCAGTTTATGTGTAGGTAGTATGAGCATCCACACTTGAGGTCGATTCGTCTACGCCTCACTACCTTCTTCTTGGCTATGCGGTGCTGGACTTTGATCGGTAGTTGAGTAGAGTGGCTCGCTGAGGGTGATGAATGTTGCATTTTTAATTGCCCAGGCTTTCAATGCAGCATTTTTATCTTCTTCGAGATATTCTTTATAGGAAGCCGTTGGCCCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTTTGAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTGAATAGACCCTTGGGCTAAGATCTATATGACCACATAGATAATTATGTGGGCCTAAGGACCTAGCCCACATTGTCTTCCCTGTTCTACTATCACCCTCAACAACTATACTTTGAGGTCTCCAGGGCCGCGCAGCGGCACCAACGACGTTCTCAGCTGCCCATTCTTCTAGTTCTTCGGGAACATTATTAAAAGAAGAAGACGAAAAAGGAGAAACATAAACTTCGGGCGGAGCCTGAAAGATTCTATCTAAGTTTGACTTTAAATTATGATATTGGAAAATATAATCTTTAGGGAGTTTTTCCCTAATAATTGCCATAGCAGCATCAGCGGAACCTGCATTCAATGCCTCTGCTGCAGCGTCGTTAGCAGTCTGGCAGCCTCCCCTAGCACTTCTTCCGTCGACCTGGAACTCTCCCCATTCCAGGGTGTCGCCGTCCTTGTCGATGTAGGACTTGACGTCCGAGCTAGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTACTTGGGGAGACCAGGTCGAAGAATCTCTGATTTGTGCAGTTGTATTTGCCCTCGAACTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCATGTAACTCACGGCAGATTTTAATATATTTTTTATTTGTAGGGGTTTGTAAATCTTTGAGTTGCCCTAATGCGTCTTCTTTAGACAGAGAGCATTTTGGGAAAGTGAGAAAATAATTTTTGGCCTTAATGCTAAAACGACCAGCTCTGGGCATCTTGAATGTCGTTTAGCAATCGGGGGGCACTCAAAGTCTGGTGAATCGGGGGAACTGGGGGGCAATTTATATGTGCCCCCCAAATGGCATTCTCGTAATTTTGTAAAGAAACTTACTTTAATTCAAATTCCACATAGCGCCCACCGTTTTAATATT

Gene Information

NCBI Accession YP_764512.1
Location 163-513
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTAGTCAACGAGTTCCCCGAATCTGTGCATGGGTTTCGTTGTATGCTTGCAATAAAATATTTGCAGGCTTTAGAGGATACTTACGAGCCCAACACTTTGGGGTCTGATTTAATTAGAGATTTAATATCTGTGATTAGAGCGAAGAATTATGTCGAAGCGACCAGGAGATATAATTATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTACACGAGCCGTGCAACTGTCCCCACTGTCCTAGGCACAAGCAAACGTCTGTCATGGACTTACCGGCCAATGTACAGAAAGCCCAGAATGTACCGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLVNEFPESVHGFRCMLAIKYLQALEDTYEPNTLGSDLIRDLISVIRAKNYVEATRRYNYFHARLEGSSKAELRQPLHEPCNCPHCPRHKQTSVMDLPANVQKAQNVPDVQKP

NCBI Accession YP_764513.1
Location 323-1099
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGGAGATATAATTATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTACACGAGCCGTGCAACTGTCCCCACTGTCCTAGGCACAAGCAAACGTCTGTCATGGACTTACCGGCCAATGTACAGAAAGCCCAGAATGTACCGGATGTACAGAAGCCCTGATGTTCCTCGAGGATGTGAAGGTCCATGTAAGATCCAATCATTTGACCAACGTGACTCTGTAACCCATACAGGTAATTCGAGATGTCTAAGTGATGTCACAAGAGGTAATGGGCTTACTCATCGTACAGGTAAACGTTTTGTTATCAAGTCTGTTTACATATTAGGTAAGGTTTGGATGGACGAGAATGTTAAGAAGTCCAATCACACAAACACGTGTATGTTCTGGTTAGTTAGAGATAGACGTCCATATGGTAATAGCCCACAAGATTTTGGACAGGTATTTAATATGTTTGATAATGAGCCCAGCACTGCAACGGTTATGAACGACAAGCGTGACCGTTATCAGGTTTTAAAGAGGTTTCAAGCAACTGTTACTGGAGGACCGTCTGGTTGCAAAGAGGCTGCTATTGTTAGGCGTTTTTTCAAGATAAACCATCATGTCACTTACAATCATCAGGAAGCAGCCAAATATGAGAATCATACGGAGAATGCTTTACTACTGTATATGGCATGTACCCATGCGTCAAATCCAGTATATGCGAGTCTTAAAATACGAATGTATTTCTATGATTCAGTCAGCAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYTSRATVPTVLGTSKRLSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKIQSFDQRDSVTHTGNSRCLSDVTRGNGLTHRTGKRFVIKSVYILGKVWMDENVKKSNHTNTCMFWLVRDRRPYGNSPQDFGQVFNMFDNEPSTATVMNDKRDRYQVLKRFQATVTGGPSGCKEAAIVRRFFKINHHVTYNHQEAAKYENHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN

NCBI Accession YP_764514.1
Location 1096-1500
Gene Name C3
Protein Name replication enhancement protein
Coding Region ATGGATTCTCGCACAGGGGAACTCATCACTGCTCGTCAGACAACGAATGGCGTTTTTATCTGGGAGACACCAAATCCCCTATATTTCAAGATCACAAGACACCTAATACACCCGTTCAACCGGCCGTTTCATATAATAGATGTCCAAATCCGGTTCAACCACAACCTTCGGAAGGCATTGGGGATTCACAAGTGTTTTCTCAACTTCAGGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAGAACACAGGTTCTAAAATACTTAAATAATTTGGGTGTAATTTCAATTAATTTAGTGATTAGAGCAGTTGCCCATGTTCTGTATTCAGTACTACTAAATACAATAGATGTAACAGAAAGTCATGAAATAAAATTCGATATTTATTAA
Protein Sequence MDSRTGELITARQTTNGVFIWETPNPLYFKITRHLIHPFNRPFHIIDVQIRFNHNLRKALGIHKCFLNFRVWTTLRPQTGRFLRVFRTQVLKYLNNLGVISINLVIRAVAHVLYSVLLNTIDVTESHEIKFDIY

NCBI Accession YP_764515.1
Location 1241-1648
Gene Name C2
Protein Name transcriptional activation protein
Coding Region ATGCAACATTCATCACCCTCAGCGAGCCACTCTACTCAACTACCGATCAAAGTCCAGCACCGCATAGCCAAGAAGAAGGTAGTGAGGCGTAGACGAATCGACCTCAAGTGTGGATGCTCATACTACCTACACATAAACTGCGCCAACCATGGATTCTCGCACAGGGGAACTCATCACTGCTCGTCAGACAACGAATGGCGTTTTTATCTGGGAGACACCAAATCCCCTATATTTCAAGATCACAAGACACCTAATACACCCGTTCAACCGGCCGTTTCATATAATAGATGTCCAAATCCGGTTCAACCACAACCTTCGGAAGGCATTGGGGATTCACAAGTGTTTTCTCAACTTCAGGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAG
Protein Sequence MQHSSPSASHSTQLPIKVQHRIAKKKVVRRRRIDLKCGCSYYLHINCANHGFSHRGTHHCSSDNEWRFYLGDTKSPIFQDHKTPNTPVQPAVSYNRCPNPVQPQPSEGIGDSQVFSQLQGLDDLTASDWSFLKGI

NCBI Accession YP_764516.1
Location 1557-2636
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCCAGAGCTGGTCGTTTTAGCATTAAGGCCAAAAATTATTTTCTCACTTTCCCAAAATGCTCTCTGTCTAAAGAAGACGCATTAGGGCAACTCAAAGATTTACAAACCCCTACAAATAAAAAATATATTAAAATCTGCCGTGAGTTACATGAGAATGGGGAACCACATCTCCATGTGCTTATCCAGTTCGAGGGCAAATACAACTGCACAAATCAGAGATTCTTCGACCTGGTCTCCCCAAGTAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCGGACGTCAAGTCCTACATCGACAAGGACGGCGACACCCTGGAATGGGGAGAGTTCCAGGTCGACGGAAGAAGTGCTAGGGGAGGCTGCCAGACTGCTAACGACGCTGCAGCAGAGGCATTGAATGCAGGTTCCGCTGATGCTGCTATGGCAATTATTAGGGAAAAACTCCCTAAAGATTATATTTTCCAATATCATAATTTAAAGTCAAACTTAGATAGAATCTTTCAGGCTCCGCCCGAAGTTTATGTTTCTCCTTTTTCGTCTTCTTCTTTTAATAATGTTCCCGAAGAACTAGAAGAATGGGCAGCTGAGAACGTCGTTGGTGCCGCTGCGCGGCCCTGGAGACCTCAAAGTATAGTTGTTGAGGGTGATAGTAGAACAGGGAAGACAATGTGGGCTAGGTCCTTAGGCCCACATAATTATCTATGTGGTCATATAGATCTTAGCCCAAGGGTCTATTCAAATGAAGCATGGTATAACGTCATAGATGATGTTGACCCGCATTATCTCAAACACTTTAAAGAATTCATGGGGGCCCAGAGGGACTGGCAGAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCAACAATCTTCCTCTGCAATCCTGGGCCAACGGCTTCCTATAAAGAATATCTCGAAGAAGATAAAAATGCTGCATTGAAAGCCTGGGCAATTAAAAATGCAACATTCATCACCCTCAGCGAGCCACTCTACTCAACTACCGATCAAAGTCCAGCACCGCATAGCCAAGAAGAAGGTAGTGAGGCGTAG
Protein Sequence MPRAGRFSIKAKNYFLTFPKCSLSKEDALGQLKDLQTPTNKKYIKICRELHENGEPHLHVLIQFEGKYNCTNQRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGCQTANDAAAEALNAGSADAAMAIIREKLPKDYIFQYHNLKSNLDRIFQAPPEVYVSPFSSSSFNNVPEELEEWAAENVVGAAARPWRPQSIVVEGDSRTGKTMWARSLGPHNYLCGHIDLSPRVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTASYKEYLEEDKNAALKAWAIKNATFITLSEPLYSTTDQSPAPHSQEEGSEA

NCBI Accession YP_764517.1
Location 2222-2485
Gene Name C4
Protein Name C4 protein
Coding Region ATGAGAATGGGGAACCACATCTCCATGTGCTTATCCAGTTCGAGGGCAAATACAACTGCACAAATCAGAGATTCTTCGACCTGGTCTCCCCAAGTAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCGGACGTCAAGTCCTACATCGACAAGGACGGCGACACCCTGGAATGGGGAGAGTTCCAGGTCGACGGAAGAAGTGCTAGGGGAGGCTGCCAGACTGCTAACGACGCTGCAGCAGAGGCATTGA
Protein Sequence MRMGNHISMCLSSSRANTTAQIRDSSTWSPQVGQHISIRTFRELSLARTSSPTSTRTATPWNGESSRSTEEVLGEAARLLTTLQQRH

References More References in PubMed

1

High-Throughput Sequencing Identified Distinct Bipartite and Monopartite Begomovirus Variants Associated with DNA-Satellites from Tomato and Muskmelon Plants in Saudi Arabia.

AlHudaib KA, et al.  Plants (Basel). 2022 Dec 20;12(1):6. doi: 10.3390/plants12010006.

PMID: 36616136
2

Roles and interactions of begomoviruses and satellite DNAs associated with okra leaf curl disease in Mali, West Africa.

Kon T, et al.  J Gen Virol. 2009 Apr;90(Pt 4):1001-1013. doi: 10.1099/vir.0.008102-0. Epub 2009 Mar 4.

PMID: 19264648
3

Molecular characterization of begomoviruses and DNA satellites associated with okra leaf curl disease in Cameroon.

Leke WN, et al.  Virus Res. 2013 Jun;174(1-2):116-25. doi: 10.1016/j.virusres.2013.03.010. Epub 2013 Mar 25.

PMID: 23535770
4

A New Begomovirus Species Causing Tomato Leaf Curl Disease in Varanasi, India.

Chakraborty S, et al.  Plant Dis. 2003 Mar;87(3):313. doi: 10.1094/PDIS.2003.87.3.313A.

PMID: 30812767