Genus | Begomovirus |
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NCBI Assembly | GCF_000867665.1 |
Isolate | Mali |
Release date | 2015/2/13 |
Submitter | Shih,S.L., Green,S.K., Tsai,W.S., Lee,L.M., Levasseur,V. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_764512.1 |
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Location | 163-513 |
Gene Name | V2 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGATCCATTAGTCAACGAGTTCCCCGAATCTGTGCATGGGTTTCGTTGTATGCTTGCAATAAAATATTTGCAGGCTTTAGAGGATACTTACGAGCCCAACACTTTGGGGTCTGATTTAATTAGAGATTTAATATCTGTGATTAGAGCGAAGAATTATGTCGAAGCGACCAGGAGATATAATTATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTACACGAGCCGTGCAACTGTCCCCACTGTCCTAGGCACAAGCAAACGTCTGTCATGGACTTACCGGCCAATGTACAGAAAGCCCAGAATGTACCGGATGTACAGAAGCCCTGA |
Protein Sequence | MWDPLVNEFPESVHGFRCMLAIKYLQALEDTYEPNTLGSDLIRDLISVIRAKNYVEATRRYNYFHARLEGSSKAELRQPLHEPCNCPHCPRHKQTSVMDLPANVQKAQNVPDVQKP |
NCBI Accession | YP_764513.1 |
---|---|
Location | 323-1099 |
Gene Name | V1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGGAGATATAATTATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTACACGAGCCGTGCAACTGTCCCCACTGTCCTAGGCACAAGCAAACGTCTGTCATGGACTTACCGGCCAATGTACAGAAAGCCCAGAATGTACCGGATGTACAGAAGCCCTGATGTTCCTCGAGGATGTGAAGGTCCATGTAAGATCCAATCATTTGACCAACGTGACTCTGTAACCCATACAGGTAATTCGAGATGTCTAAGTGATGTCACAAGAGGTAATGGGCTTACTCATCGTACAGGTAAACGTTTTGTTATCAAGTCTGTTTACATATTAGGTAAGGTTTGGATGGACGAGAATGTTAAGAAGTCCAATCACACAAACACGTGTATGTTCTGGTTAGTTAGAGATAGACGTCCATATGGTAATAGCCCACAAGATTTTGGACAGGTATTTAATATGTTTGATAATGAGCCCAGCACTGCAACGGTTATGAACGACAAGCGTGACCGTTATCAGGTTTTAAAGAGGTTTCAAGCAACTGTTACTGGAGGACCGTCTGGTTGCAAAGAGGCTGCTATTGTTAGGCGTTTTTTCAAGATAAACCATCATGTCACTTACAATCATCAGGAAGCAGCCAAATATGAGAATCATACGGAGAATGCTTTACTACTGTATATGGCATGTACCCATGCGTCAAATCCAGTATATGCGAGTCTTAAAATACGAATGTATTTCTATGATTCAGTCAGCAATTAA |
Protein Sequence | MSKRPGDIIISTPVSKVRRRLNFDSPYTSRATVPTVLGTSKRLSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKIQSFDQRDSVTHTGNSRCLSDVTRGNGLTHRTGKRFVIKSVYILGKVWMDENVKKSNHTNTCMFWLVRDRRPYGNSPQDFGQVFNMFDNEPSTATVMNDKRDRYQVLKRFQATVTGGPSGCKEAAIVRRFFKINHHVTYNHQEAAKYENHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN |
NCBI Accession | YP_764514.1 |
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Location | 1096-1500 |
Gene Name | C3 |
Protein Name | replication enhancement protein |
Coding Region | ATGGATTCTCGCACAGGGGAACTCATCACTGCTCGTCAGACAACGAATGGCGTTTTTATCTGGGAGACACCAAATCCCCTATATTTCAAGATCACAAGACACCTAATACACCCGTTCAACCGGCCGTTTCATATAATAGATGTCCAAATCCGGTTCAACCACAACCTTCGGAAGGCATTGGGGATTCACAAGTGTTTTCTCAACTTCAGGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAGAACACAGGTTCTAAAATACTTAAATAATTTGGGTGTAATTTCAATTAATTTAGTGATTAGAGCAGTTGCCCATGTTCTGTATTCAGTACTACTAAATACAATAGATGTAACAGAAAGTCATGAAATAAAATTCGATATTTATTAA |
Protein Sequence | MDSRTGELITARQTTNGVFIWETPNPLYFKITRHLIHPFNRPFHIIDVQIRFNHNLRKALGIHKCFLNFRVWTTLRPQTGRFLRVFRTQVLKYLNNLGVISINLVIRAVAHVLYSVLLNTIDVTESHEIKFDIY |
NCBI Accession | YP_764515.1 |
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Location | 1241-1648 |
Gene Name | C2 |
Protein Name | transcriptional activation protein |
Coding Region | ATGCAACATTCATCACCCTCAGCGAGCCACTCTACTCAACTACCGATCAAAGTCCAGCACCGCATAGCCAAGAAGAAGGTAGTGAGGCGTAGACGAATCGACCTCAAGTGTGGATGCTCATACTACCTACACATAAACTGCGCCAACCATGGATTCTCGCACAGGGGAACTCATCACTGCTCGTCAGACAACGAATGGCGTTTTTATCTGGGAGACACCAAATCCCCTATATTTCAAGATCACAAGACACCTAATACACCCGTTCAACCGGCCGTTTCATATAATAGATGTCCAAATCCGGTTCAACCACAACCTTCGGAAGGCATTGGGGATTCACAAGTGTTTTCTCAACTTCAGGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAG |
Protein Sequence | MQHSSPSASHSTQLPIKVQHRIAKKKVVRRRRIDLKCGCSYYLHINCANHGFSHRGTHHCSSDNEWRFYLGDTKSPIFQDHKTPNTPVQPAVSYNRCPNPVQPQPSEGIGDSQVFSQLQGLDDLTASDWSFLKGI |
NCBI Accession | YP_764516.1 |
---|---|
Location | 1557-2636 |
Gene Name | C1 |
Protein Name | replication-associated protein |
Coding Region | ATGCCCAGAGCTGGTCGTTTTAGCATTAAGGCCAAAAATTATTTTCTCACTTTCCCAAAATGCTCTCTGTCTAAAGAAGACGCATTAGGGCAACTCAAAGATTTACAAACCCCTACAAATAAAAAATATATTAAAATCTGCCGTGAGTTACATGAGAATGGGGAACCACATCTCCATGTGCTTATCCAGTTCGAGGGCAAATACAACTGCACAAATCAGAGATTCTTCGACCTGGTCTCCCCAAGTAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCGGACGTCAAGTCCTACATCGACAAGGACGGCGACACCCTGGAATGGGGAGAGTTCCAGGTCGACGGAAGAAGTGCTAGGGGAGGCTGCCAGACTGCTAACGACGCTGCAGCAGAGGCATTGAATGCAGGTTCCGCTGATGCTGCTATGGCAATTATTAGGGAAAAACTCCCTAAAGATTATATTTTCCAATATCATAATTTAAAGTCAAACTTAGATAGAATCTTTCAGGCTCCGCCCGAAGTTTATGTTTCTCCTTTTTCGTCTTCTTCTTTTAATAATGTTCCCGAAGAACTAGAAGAATGGGCAGCTGAGAACGTCGTTGGTGCCGCTGCGCGGCCCTGGAGACCTCAAAGTATAGTTGTTGAGGGTGATAGTAGAACAGGGAAGACAATGTGGGCTAGGTCCTTAGGCCCACATAATTATCTATGTGGTCATATAGATCTTAGCCCAAGGGTCTATTCAAATGAAGCATGGTATAACGTCATAGATGATGTTGACCCGCATTATCTCAAACACTTTAAAGAATTCATGGGGGCCCAGAGGGACTGGCAGAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCAACAATCTTCCTCTGCAATCCTGGGCCAACGGCTTCCTATAAAGAATATCTCGAAGAAGATAAAAATGCTGCATTGAAAGCCTGGGCAATTAAAAATGCAACATTCATCACCCTCAGCGAGCCACTCTACTCAACTACCGATCAAAGTCCAGCACCGCATAGCCAAGAAGAAGGTAGTGAGGCGTAG |
Protein Sequence | MPRAGRFSIKAKNYFLTFPKCSLSKEDALGQLKDLQTPTNKKYIKICRELHENGEPHLHVLIQFEGKYNCTNQRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGCQTANDAAAEALNAGSADAAMAIIREKLPKDYIFQYHNLKSNLDRIFQAPPEVYVSPFSSSSFNNVPEELEEWAAENVVGAAARPWRPQSIVVEGDSRTGKTMWARSLGPHNYLCGHIDLSPRVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTASYKEYLEEDKNAALKAWAIKNATFITLSEPLYSTTDQSPAPHSQEEGSEA |
NCBI Accession | YP_764517.1 |
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Location | 2222-2485 |
Gene Name | C4 |
Protein Name | C4 protein |
Coding Region | ATGAGAATGGGGAACCACATCTCCATGTGCTTATCCAGTTCGAGGGCAAATACAACTGCACAAATCAGAGATTCTTCGACCTGGTCTCCCCAAGTAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCGGACGTCAAGTCCTACATCGACAAGGACGGCGACACCCTGGAATGGGGAGAGTTCCAGGTCGACGGAAGAAGTGCTAGGGGAGGCTGCCAGACTGCTAACGACGCTGCAGCAGAGGCATTGA |
Protein Sequence | MRMGNHISMCLSSSRANTTAQIRDSSTWSPQVGQHISIRTFRELSLARTSSPTSTRTATPWNGESSRSTEEVLGEAARLLTTLQQRH |
1 |
AlHudaib KA, et al. Plants (Basel). 2022 Dec 20;12(1):6. doi: 10.3390/plants12010006. PMID: 36616136 |
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2 |
Kon T, et al. J Gen Virol. 2009 Apr;90(Pt 4):1001-1013. doi: 10.1099/vir.0.008102-0. Epub 2009 Mar 4. PMID: 19264648 |
3 |
Leke WN, et al. Virus Res. 2013 Jun;174(1-2):116-25. doi: 10.1016/j.virusres.2013.03.010. Epub 2013 Mar 25. PMID: 23535770 |
4 |
A New Begomovirus Species Causing Tomato Leaf Curl Disease in Varanasi, India. Chakraborty S, et al. Plant Dis. 2003 Mar;87(3):313. doi: 10.1094/PDIS.2003.87.3.313A. PMID: 30812767 |