Okra leaf curl Oman virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_001504015.1
Isolate Oman:Barka
Release date 2016/1/7
Submitter Khan,A.J., Akhtar,S.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_028985
ACCGGATGGCCGCGCGATTTTTTTTGTGGTCCCCGCCCCACGTGAACACGTCGCGCGAGTTCTGAAGATGTCGCGCGATGCTGTCCAATCAGAACGCGCGCTCTACGCATTATAATTTGAAATTTGAAATATAAACTTGCTCCCCTAAGTTTGTCCGGCATAACTATGTGGGATCCGTTATTGAACGACTTCCCTGAATCCGTTCACGGTTTCCGTTGTATGCTCGCCGTGAAATATTTGCAGGCTGTTCGAGAGTCGTACGATCCTTGCACTCTTGGGTACGATCTTCTTAGCGATCTTATCGGAGTTGTTCGCCGTACCAACTATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGCCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAGCGTCGGGCCTGGAACAACAGGCCCCTATACAGAAAACCGAGGATTTATCGAATTTATCGCAGCCCAGATGTCCCAAAGGGATGTGAAGGTCCTTGTAAGGTCCAGTCTTATGAACAGCGTGATGATGTCAAGCATACGGGCATTGTTCGATGTGTGTCGGATGTTACTAAGGGTGTTGGTCTTACTCATCGTACTGGAAAGCGTTTCACTATCAAATCTATCTATATTCTTGGTAAGGTATGGATGGATGACAACATTAAGAAGCAGAATCACACCAACAATGTAATGTTTTTCCTTGTCCGTGATAGAAGACCCTATGGCAATAGTCCCATGGATTTTGGACAGGTTTTTCACATGTTTGACAACGAACCTAGCACTGCCACTGTAAAGAATGATTTGCGAGATCGTTTTCAGGTGATGCGTAAGTTTAGTGCTACTGTAACTGGTGGCCCTTCTGGGATGAAGGAACAAGTTCCTGTTCGTAGGTTTTTTAAGCTTAATAGTCAGACTGTGTATAACCATCAAGAAGCTGCGAAGTATGAGAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCAAACCCTGTGTATGCTACGTTAAAGATACGGATCTATTTCTACGATTCGGTATCTAATTAATATAATTTTATTTGAATATTGTGCGTGAATTCACTTGCCACGGTTGTTTGCAATACATCGTACAAAACATGATTGACTGCCCTAATTACATTGTTAATTGAAATTACGCCTATTCTATACAAATATTTCATAATCTGCTTCCTAAATACGTTTAAGAAAAGACCAGTCGGAGGGCGTGAGATCGTCCAGACCCTGAAGTTCATGAAACATTTGTGAATCCCCAATTCCTTCCTGAGGTTGTAGTTGAATCTTATCTGCATCTCTACCATTGTTTGATTCCCGTGCGTTAGAGGAATCTCCTTTATGGTTTTGAAATACAGGGGATTGTTGATTGTCCAGATAAGTACGCCATTCTCTGTCTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTCTCTGCACGTGAAGGCTACGTATACTGTGCAACCACAAGGGATGTCAATCCTGCGTCTCCTGATTGCTCTCTTCTTGGCCTCCCGATGCTGAACTTTGATTGGTACCTGAGTACAGCGGATTTGAGAGGGTGATGAAGGTCGCATTCTTTAATGCCCAGGATTTTAATGCTGAGTTCTTGTCCTCGTCTAAGAACTCTTTATAGCTTGCATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGTTTCCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCGACGTCATCAATGATGTTATACCAAGCGTCGTTACTGTACACCTTTGGACTTAGATCTAAATGCCCACATAGATAATTATGTGGGCCTAGTGACCTAGCCCATACGGTCTTTCCTGTTCTGCTTTCCCCTTCAATCACTATACTAATCGGTCTACTTGGCCGCGCAGCGGCATCGACGACGTTCTCGGCCGCCCACTCTTCAAGTTCTTCTGGAACTTGATCGAACGAAGAAGAAGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAATACCTATCTAAATTACAATTTAAATTATGAAATTGGAGTAGAAAGTCTCTTGGGGCTTTCTCCTTCAGTATATTGAGGGCCTGAGCTTTGGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACCTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTGACATCGCTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGGTGAGGTCGAAGAATCTATTGTTCTTGCACTGGAACTTCCCTTCGAATTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTTTTGGAAGTGGGTGTTTGGAGATTTAATAATTGGGAAAGTGCTTCCTCTTTAGTAAGAGAGCACTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTCTAAACCGATTGGGGGCTGCCATGCTGACTTAGTCAATCGGTGTCTCTCAATTTGCTCTATGTATTGGTGTACTGGAGTCCTATATATATGGAGACTCTAATGGCATAATTGTAATAAAAGAACTTTAATTTGAATTTCAAATGAAAAGCCTAAAGCGGCCATCCGTCTAATATT

Gene Information

NCBI Accession YP_009216259.1
Location 166-534
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCGTTATTGAACGACTTCCCTGAATCCGTTCACGGTTTCCGTTGTATGCTCGCCGTGAAATATTTGCAGGCTGTTCGAGAGTCGTACGATCCTTGCACTCTTGGGTACGATCTTCTTAGCGATCTTATCGGAGTTGTTCGCCGTACCAACTATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGCCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAGCGTCGGGCCTGGAACAACAGGCCCCTATACAGAAAACCGAGGATTTATCGAATTTATCGCAGCCCAGATGTCCCAAAGGGATGTGA
Protein Sequence MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPCTLGYDLLSDLIGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRVILCTCPHCPRHKQASGLEQQAPIQKTEDLSNLSQPRCPKGM

NCBI Accession YP_009216260.1
Location 326-1102
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGCCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAGCGTCGGGCCTGGAACAACAGGCCCCTATACAGAAAACCGAGGATTTATCGAATTTATCGCAGCCCAGATGTCCCAAAGGGATGTGAAGGTCCTTGTAAGGTCCAGTCTTATGAACAGCGTGATGATGTCAAGCATACGGGCATTGTTCGATGTGTGTCGGATGTTACTAAGGGTGTTGGTCTTACTCATCGTACTGGAAAGCGTTTCACTATCAAATCTATCTATATTCTTGGTAAGGTATGGATGGATGACAACATTAAGAAGCAGAATCACACCAACAATGTAATGTTTTTCCTTGTCCGTGATAGAAGACCCTATGGCAATAGTCCCATGGATTTTGGACAGGTTTTTCACATGTTTGACAACGAACCTAGCACTGCCACTGTAAAGAATGATTTGCGAGATCGTTTTCAGGTGATGCGTAAGTTTAGTGCTACTGTAACTGGTGGCCCTTCTGGGATGAAGGAACAAGTTCCTGTTCGTAGGTTTTTTAAGCTTAATAGTCAGACTGTGTATAACCATCAAGAAGCTGCGAAGTATGAGAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCAAACCCTGTGTATGCTACGTTAAAGATACGGATCTATTTCTACGATTCGGTATCTAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAWNNRPLYRKPRIYRIYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGVGLTHRTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFHMFDNEPSTATVKNDLRDRFQVMRKFSATVTGGPSGMKEQVPVRRFFKLNSQTVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009216261.1
Location 1099-1500
Gene Name C3
Protein Name replication enhancement protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAGACAGAGAATGGCGTACTTATCTGGACAATCAACAATCCCCTGTATTTCAAAACCATAAAGGAGATTCCTCTAACGCACGGGAATCAAACAATGGTAGAGATGCAGATAAGATTCAACTACAACCTCAGGAAGGAATTGGGGATTCACAAATGTTTCATGAACTTCAGGGTCTGGACGATCTCACGCCCTCCGACTGGTCTTTTCTTAAACGTATTTAGGAAGCAGATTATGAAATATTTGTATAGAATAGGCGTAATTTCAATTAACAATGTAATTAGGGCAGTCAATCATGTTTTGTACGATGTATTGCAAACAACCGTGGCAAGTGAATTCACGCACAATATTCAAATAAAATTATATTAA
Protein Sequence MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIPLTHGNQTMVEMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRIGVISINNVIRAVNHVLYDVLQTTVASEFTHNIQIKLY

NCBI Accession YP_009216262.1
Location 1244-1648
Gene Name C2
Protein Name transcriptional activator protein
Coding Region ATGCGACCTTCATCACCCTCTCAAATCCGCTGTACTCAGGTACCAATCAAAGTTCAGCATCGGGAGGCCAAGAAGAGAGCAATCAGGAGACGCAGGATTGACATCCCTTGTGGTTGCACAGTATACGTAGCCTTCACGTGCAGAGACAATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAGACAGAGAATGGCGTACTTATCTGGACAATCAACAATCCCCTGTATTTCAAAACCATAAAGGAGATTCCTCTAACGCACGGGAATCAAACAATGGTAGAGATGCAGATAAGATTCAACTACAACCTCAGGAAGGAATTGGGGATTCACAAATGTTTCATGAACTTCAGGGTCTGGACGATCTCACGCCCTCCGACTGGTCTTTTCTTAAACGTATTTAG
Protein Sequence MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAFTCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQPQEGIGDSQMFHELQGLDDLTPSDWSFLKRI

NCBI Accession YP_009216263.1
Location 1548-2636
Gene Name C1
Protein Name replication initiation protein
Coding Region ATGGCAGCCCCCAATCGGTTTAGAATAAATGCCAAAAATTATTTTCTCACTTATCCCAAGTGCTCTCTTACTAAAGAGGAAGCACTTTCCCAATTATTAAATCTCCAAACACCCACTTCCAAAAAATTCATTAGAATCTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTTCTCATCCAATTCGAAGGGAAGTTCCAGTGCAAGAACAATAGATTCTTCGACCTCACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCCAAAGCTCAGGCCCTCAATATACTGAAGGAGAAAGCCCCAAGAGACTTTCTACTCCAATTTCATAATTTAAATTGTAATTTAGATAGGTATTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCTTCTTCTTCGTTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCGGCCGAGAACGTCGTCGATGCCGCTGCGCGGCCAAGTAGACCGATTAGTATAGTGATTGAAGGGGAAAGCAGAACAGGAAAGACCGTATGGGCTAGGTCACTAGGCCCACATAATTATCTATGTGGGCATTTAGATCTAAGTCCAAAGGTGTACAGTAACGACGCTTGGTATAACATCATTGATGACGTCGATCCGCACTTCCTCAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAATACGGGAAACCAGTTCAAATTAAAGGGGGCATCCCAACAATCTTCCTCTGCAATCCAGGGCCCAATGCAAGCTATAAAGAGTTCTTAGACGAGGACAAGAACTCAGCATTAAAATCCTGGGCATTAAAGAATGCGACCTTCATCACCCTCTCAAATCCGCTGTACTCAGGTACCAATCAAAGTTCAGCATCGGGAGGCCAAGAAGAGAGCAATCAGGAGACGCAGGATTGA
Protein Sequence MAAPNRFRINAKNYFLTYPKCSLTKEEALSQLLNLQTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKAQALNILKEKAPRDFLLQFHNLNCNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWAAENVVDAAARPSRPISIVIEGESRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNIIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFITLSNPLYSGTNQSSASGGQEESNQETQD

NCBI Accession YP_009216264.1
Location 2186-2479
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGACTCCTCACTTGCATGTTCTCATCCAATTCGAAGGGAAGTTCCAGTGCAAGAACAATAGATTCTTCGACCTCACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCCAAAGCTCAGGCCCTCAATATACTGA
Protein Sequence MGLLTCMFSSNSKGSSSARTIDSSTSPPQPGQHISIRTFRELKAQAMSKPTWRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY

References More References in PubMed

1

Identification of Cotton leaf curl Gezira virus in Papaya in Oman.

Khan AJ, et al.  Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN.

PMID: 30727467
2

Introduction of Cotton leaf curl Gezira virus into the United Arab Emirates.

Idris A, et al.  Plant Dis. 2014 Nov;98(11):1593. doi: 10.1094/PDIS-08-14-0838-PDN.

PMID: 30699838
3

Identification of a disease complex involving a novel monopartite begomovirus with beta- and alphasatellites associated with okra leaf curl disease in Oman.

Akhtar S, et al.  Arch Virol. 2014 May;159(5):1199-205. doi: 10.1007/s00705-013-1926-x. Epub 2013 Nov 28.

PMID: 24287711
4

Genetic diversity of begomoviruses infecting tomato plant in Saudi Arabia.

Sohrab SS.  Saudi J Biol Sci. 2020 Jan;27(1):222-228. doi: 10.1016/j.sjbs.2019.08.015. Epub 2019 Aug 22.

PMID: 31889840
5

Serological relationships and epitope profiles of isolates of okra leaf curl geminivirus from Africa and the Middle East.

Swanson MM, et al.  Biochimie. 1993;75(8):707-11. doi: 10.1016/0300-9084(93)90101-w.

PMID: 7506936
6

High-Throughput Sequencing Identified Distinct Bipartite and Monopartite Begomovirus Variants Associated with DNA-Satellites from Tomato and Muskmelon Plants in Saudi Arabia.

AlHudaib KA, et al.  Plants (Basel). 2022 Dec 20;12(1):6. doi: 10.3390/plants12010006.

PMID: 36616136
7

Detection of Satellite DNA Beta in Tomato Plants with Tomato Yellow Leaf Curl Disease in Jordan.

Anfoka G, et al.  Plant Dis. 2014 Jul;98(7):1017. doi: 10.1094/PDIS-02-14-0144-PDN.

PMID: 30708869
8

Complete nucleotide sequence of a begomovirus associated with an alphasatellite and a betasatellite naturally infecting okra in Jordan.

Salem NM, et al.  Arch Virol. 2021 Jul;166(7):2033-2036. doi: 10.1007/s00705-021-05075-1. Epub 2021 Apr 26.

PMID: 33900467