Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_001504015.1 |
Isolate | Oman:Barka |
Release date | 2016/1/7 |
Submitter | Khan,A.J., Akhtar,S. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009216259.1 |
---|---|
Location | 166-534 |
Gene Name | V2 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGATCCGTTATTGAACGACTTCCCTGAATCCGTTCACGGTTTCCGTTGTATGCTCGCCGTGAAATATTTGCAGGCTGTTCGAGAGTCGTACGATCCTTGCACTCTTGGGTACGATCTTCTTAGCGATCTTATCGGAGTTGTTCGCCGTACCAACTATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGCCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAGCGTCGGGCCTGGAACAACAGGCCCCTATACAGAAAACCGAGGATTTATCGAATTTATCGCAGCCCAGATGTCCCAAAGGGATGTGA |
Protein Sequence | MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPCTLGYDLLSDLIGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRVILCTCPHCPRHKQASGLEQQAPIQKTEDLSNLSQPRCPKGM |
NCBI Accession | YP_009216260.1 |
---|---|
Location | 326-1102 |
Gene Name | V1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGCCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAGCGTCGGGCCTGGAACAACAGGCCCCTATACAGAAAACCGAGGATTTATCGAATTTATCGCAGCCCAGATGTCCCAAAGGGATGTGAAGGTCCTTGTAAGGTCCAGTCTTATGAACAGCGTGATGATGTCAAGCATACGGGCATTGTTCGATGTGTGTCGGATGTTACTAAGGGTGTTGGTCTTACTCATCGTACTGGAAAGCGTTTCACTATCAAATCTATCTATATTCTTGGTAAGGTATGGATGGATGACAACATTAAGAAGCAGAATCACACCAACAATGTAATGTTTTTCCTTGTCCGTGATAGAAGACCCTATGGCAATAGTCCCATGGATTTTGGACAGGTTTTTCACATGTTTGACAACGAACCTAGCACTGCCACTGTAAAGAATGATTTGCGAGATCGTTTTCAGGTGATGCGTAAGTTTAGTGCTACTGTAACTGGTGGCCCTTCTGGGATGAAGGAACAAGTTCCTGTTCGTAGGTTTTTTAAGCTTAATAGTCAGACTGTGTATAACCATCAAGAAGCTGCGAAGTATGAGAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCAAACCCTGTGTATGCTACGTTAAAGATACGGATCTATTTCTACGATTCGGTATCTAATTAA |
Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAWNNRPLYRKPRIYRIYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGVGLTHRTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFHMFDNEPSTATVKNDLRDRFQVMRKFSATVTGGPSGMKEQVPVRRFFKLNSQTVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession | YP_009216261.1 |
---|---|
Location | 1099-1500 |
Gene Name | C3 |
Protein Name | replication enhancement protein |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAGACAGAGAATGGCGTACTTATCTGGACAATCAACAATCCCCTGTATTTCAAAACCATAAAGGAGATTCCTCTAACGCACGGGAATCAAACAATGGTAGAGATGCAGATAAGATTCAACTACAACCTCAGGAAGGAATTGGGGATTCACAAATGTTTCATGAACTTCAGGGTCTGGACGATCTCACGCCCTCCGACTGGTCTTTTCTTAAACGTATTTAGGAAGCAGATTATGAAATATTTGTATAGAATAGGCGTAATTTCAATTAACAATGTAATTAGGGCAGTCAATCATGTTTTGTACGATGTATTGCAAACAACCGTGGCAAGTGAATTCACGCACAATATTCAAATAAAATTATATTAA |
Protein Sequence | MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIPLTHGNQTMVEMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRIGVISINNVIRAVNHVLYDVLQTTVASEFTHNIQIKLY |
NCBI Accession | YP_009216262.1 |
---|---|
Location | 1244-1648 |
Gene Name | C2 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCGACCTTCATCACCCTCTCAAATCCGCTGTACTCAGGTACCAATCAAAGTTCAGCATCGGGAGGCCAAGAAGAGAGCAATCAGGAGACGCAGGATTGACATCCCTTGTGGTTGCACAGTATACGTAGCCTTCACGTGCAGAGACAATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAGACAGAGAATGGCGTACTTATCTGGACAATCAACAATCCCCTGTATTTCAAAACCATAAAGGAGATTCCTCTAACGCACGGGAATCAAACAATGGTAGAGATGCAGATAAGATTCAACTACAACCTCAGGAAGGAATTGGGGATTCACAAATGTTTCATGAACTTCAGGGTCTGGACGATCTCACGCCCTCCGACTGGTCTTTTCTTAAACGTATTTAG |
Protein Sequence | MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAFTCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQPQEGIGDSQMFHELQGLDDLTPSDWSFLKRI |
NCBI Accession | YP_009216263.1 |
---|---|
Location | 1548-2636 |
Gene Name | C1 |
Protein Name | replication initiation protein |
Coding Region | ATGGCAGCCCCCAATCGGTTTAGAATAAATGCCAAAAATTATTTTCTCACTTATCCCAAGTGCTCTCTTACTAAAGAGGAAGCACTTTCCCAATTATTAAATCTCCAAACACCCACTTCCAAAAAATTCATTAGAATCTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTTCTCATCCAATTCGAAGGGAAGTTCCAGTGCAAGAACAATAGATTCTTCGACCTCACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCCAAAGCTCAGGCCCTCAATATACTGAAGGAGAAAGCCCCAAGAGACTTTCTACTCCAATTTCATAATTTAAATTGTAATTTAGATAGGTATTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCTTCTTCTTCGTTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCGGCCGAGAACGTCGTCGATGCCGCTGCGCGGCCAAGTAGACCGATTAGTATAGTGATTGAAGGGGAAAGCAGAACAGGAAAGACCGTATGGGCTAGGTCACTAGGCCCACATAATTATCTATGTGGGCATTTAGATCTAAGTCCAAAGGTGTACAGTAACGACGCTTGGTATAACATCATTGATGACGTCGATCCGCACTTCCTCAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAATACGGGAAACCAGTTCAAATTAAAGGGGGCATCCCAACAATCTTCCTCTGCAATCCAGGGCCCAATGCAAGCTATAAAGAGTTCTTAGACGAGGACAAGAACTCAGCATTAAAATCCTGGGCATTAAAGAATGCGACCTTCATCACCCTCTCAAATCCGCTGTACTCAGGTACCAATCAAAGTTCAGCATCGGGAGGCCAAGAAGAGAGCAATCAGGAGACGCAGGATTGA |
Protein Sequence | MAAPNRFRINAKNYFLTYPKCSLTKEEALSQLLNLQTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKAQALNILKEKAPRDFLLQFHNLNCNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWAAENVVDAAARPSRPISIVIEGESRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNIIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFITLSNPLYSGTNQSSASGGQEESNQETQD |
NCBI Accession | YP_009216264.1 |
---|---|
Location | 2186-2479 |
Gene Name | C4 |
Protein Name | C4 protein |
Coding Region | ATGGGACTCCTCACTTGCATGTTCTCATCCAATTCGAAGGGAAGTTCCAGTGCAAGAACAATAGATTCTTCGACCTCACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCCAAAGCTCAGGCCCTCAATATACTGA |
Protein Sequence | MGLLTCMFSSNSKGSSSARTIDSSTSPPQPGQHISIRTFRELKAQAMSKPTWRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY |
1 |
Identification of Cotton leaf curl Gezira virus in Papaya in Oman. Khan AJ, et al. Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN. PMID: 30727467 |
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2 |
Introduction of Cotton leaf curl Gezira virus into the United Arab Emirates. Idris A, et al. Plant Dis. 2014 Nov;98(11):1593. doi: 10.1094/PDIS-08-14-0838-PDN. PMID: 30699838 |
3 |
Akhtar S, et al. Arch Virol. 2014 May;159(5):1199-205. doi: 10.1007/s00705-013-1926-x. Epub 2013 Nov 28. PMID: 24287711 |
4 |
Genetic diversity of begomoviruses infecting tomato plant in Saudi Arabia. Sohrab SS. Saudi J Biol Sci. 2020 Jan;27(1):222-228. doi: 10.1016/j.sjbs.2019.08.015. Epub 2019 Aug 22. PMID: 31889840 |
5 |
Swanson MM, et al. Biochimie. 1993;75(8):707-11. doi: 10.1016/0300-9084(93)90101-w. PMID: 7506936 |
6 |
AlHudaib KA, et al. Plants (Basel). 2022 Dec 20;12(1):6. doi: 10.3390/plants12010006. PMID: 36616136 |
7 |
Detection of Satellite DNA Beta in Tomato Plants with Tomato Yellow Leaf Curl Disease in Jordan. Anfoka G, et al. Plant Dis. 2014 Jul;98(7):1017. doi: 10.1094/PDIS-02-14-0144-PDN. PMID: 30708869 |
8 |
Salem NM, et al. Arch Virol. 2021 Jul;166(7):2033-2036. doi: 10.1007/s00705-021-05075-1. Epub 2021 Apr 26. PMID: 33900467 |