Ocimum yellow vein virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_018589035.1
Isolate Uganda
Release date 2021/6/1
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_055592
ACCGGATGGCCGCCCGCCCCGCCCGCATCGACGCCCCCTTCTCGCGCGTGTCTCCCACATCGAACACGTGGCGCTCTATATGCGTGTTTTACGTTGTTTGTTATTGTATATGTATTTTATTAGTGAAGTACGATGTCTTCGTATTTAGGAACGATGTGGGACCCCTTGGAGAATGAGTTCCCGGAGACCGTCCATGGTTTTCGGTGTATGCTAGCCGTGAAATATCTTCTGTTGGTGGAGTCTACGTATGAACCTGATACCCTAGGTCGTGAGCTCATACGCGATCTCATACGTTGTTTGCGTGCTTCGTCTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGAAGGTCCGTGTAAGGTCCAGTCGTATGAGGCCCGTCATGATGTCAAGCATACTGGAACTGTTTTGTGTTGTTCTGATGTTACACGTGGTACTGGTTTGACTCACCGTGTTGGTAAGAGATTTACTATTAAGTCAATTTACATTCTGGGCAAGATTTGGATGGATGAGAATATTAAGAAGAAGAATCATACGAACATCGTCATGTTCTATCTTGTTCGTGATCGACGACCGTCTGACAAACCTTATGAATTTGGTTCTGTATTTAATATGTTTGATAATGAGCCTGCTACGGCGACAGTTAAGATGGATCATAGGGATAGGTTTCAGGTACTTCATAAATTTTATGCTTGGGTTACTGGTGGTGAATATGGTTCTAAAGAGCAGGCTATGGTACGGAGGTTTCGGAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGCTGCTGAATATAAGAATCATCAGGAGAATGCGTTATTATTGTATATGGCTTGTACTCATGCTTCAAATCCTGTATATGCGACTCTTAAATGTCGTATTTATTTCTATGACAGTGTATCGAATTAATAAAATTTGAATTTTATATCATGATCTTCTTGCACTTCAATTGTGCCTTCCAATACATTATACAGTACATGTTCTGCAGCTCTAATACAAATATTTAAGCTAATAGCACCCAACTGGTTTACATATTTAATAAACTGATATTTAAATACTCTTAAGAAATGCGATGTCTGAGGTTGTAAACGAGTGAAGATCTTGAAGTTCAGAAAACACTTCAGAATCCCCAACGCCTTCTTGAGGTTGTGGTTGAATCTGACTTGGACCACTACTATGTCGTGTCCCGTCCGGAATGGTCTGCTGTGGTGGTATAAAATTTTGAAATATAGGGGATTCGGTACGTCGGAGATATAGACGCCATTCATTGACTGAGCTGCAGTGATATTCTCCCCTGTGCGAGAATCCATGATTATGGCAGTCAATGCTCAGATAGTAGCTGCAACCGCACCGGAGATCTATTCTCTTCCTCCTGATTGTCGTTCGCTTCGTCTGCTTGGCTATCTTGTGTTGTACCTTGATTGGAACTTGTGGTGGTGGAATATAAGGGACTCTCGAGGGTGAAGAACTTGGCATTCTTTTCAGCCCAGGCCTTTAGCTGTGCATTCTTCTCCTCATTCAAATATGATTTATAAGAAGAATTATGACCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTTTGCCAATCCCTTTGGGCGCCCATCAACTCTTTAAAGTGCTTTAGGTAGTGGGGGTCAACATCATCAATAATGTTGTACCATGCTGAATTTGAAAATACCTTTGGGGATAAGTCGAGGTGTCCACACAGGTAATTATGTGGACCCAGACTCCGCGCCCAAATAGTCTTGCCGGTACGACTATCTCCCTCTATGACTGCTGATATTGGTCTCCATGGCCGCGCAGCGGAATCCTTGATATTTTCGTGAACCCATTGTGTTATCTCTTCAGGCACGTTGCTGTAAGTTGCATTAGCATATGGACTCACGTAAGGAGGAGGTGGAACTTGGAATATCCTCTCGAGATTTGCTTTCAGATTATGATATTGGAATATGTAATCCTTCGGCAGTTTTTCTCTGATTATTGCGAGTGCCGCATCTGCTGTATTTGCATTTAATGCATCTGCACATGCATCGTTTGCATTTTGGCAACCGCCTCTGGCACTTCGTCCATCTACCTGGAATTCTCCCCATTTGAGTGTATCGCCGTCCTTCTCGATGTATGATTTAACGTCCGAGCTTGATTTAACTCCCTGAATGTTCGGATGGTAATGTGATCCCCTGCCTGTGGCCTTAAGATCGAAGAATCTGTTATTCGTGCATGTGAGTTTGCCTTCGAATTGAATGAGAATATGGAGGTGAGGTTGCCCATCTTCGTGAAGCTCTCTGGCAATTTCAATGAATTTTTTATTCGTCTGTGTTTCAATTGCACGAATTTGGGCGAGAGCTTCTTCTTTAGAGAGGGGACATTTTGGATATGTGAGGAAATAATTTTTGGCTTGAATTTTGAAGCGACGTGGAGGAGCCATTTATAGAGAGAGAATGTCTCCAATTGCTTTTCAGCTGAAGTCTCCATTGTATTGGAGACAATATATAGTGTCTCCAAATGGCATTATGGTAATTTTAAAAAGTAATAGGCTCCTTTCAAATCTAGTCGTACACGTGGGCTCATATGCGGCCATCCGTTTAATATT

Gene Information

NCBI Accession YP_010087824.1
Location 133-519
Gene Name AV2
Protein Name precoat protein
Coding Region ATGTCTTCGTATTTAGGAACGATGTGGGACCCCTTGGAGAATGAGTTCCCGGAGACCGTCCATGGTTTTCGGTGTATGCTAGCCGTGAAATATCTTCTGTTGGTGGAGTCTACGTATGAACCTGATACCCTAGGTCGTGAGCTCATACGCGATCTCATACGTTGTTTGCGTGCTTCGTCTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGA
Protein Sequence MSSYLGTMWDPLENEFPETVHGFRCMLAVKYLLLVESTYEPDTLGRELIRDLIRCLRASSYNEASWRYSNFHTRFQGSSSSEFRQPVFRPCTCQHCPYFQKTNMGLSSYVQKAQDIPDVQKPGCSKGL

NCBI Accession YP_010087825.1
Location 317-1084
Gene Name AV1
Protein Name coat protein
Coding Region ATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGAAGGTCCGTGTAAGGTCCAGTCGTATGAGGCCCGTCATGATGTCAAGCATACTGGAACTGTTTTGTGTTGTTCTGATGTTACACGTGGTACTGGTTTGACTCACCGTGTTGGTAAGAGATTTACTATTAAGTCAATTTACATTCTGGGCAAGATTTGGATGGATGAGAATATTAAGAAGAAGAATCATACGAACATCGTCATGTTCTATCTTGTTCGTGATCGACGACCGTCTGACAAACCTTATGAATTTGGTTCTGTATTTAATATGTTTGATAATGAGCCTGCTACGGCGACAGTTAAGATGGATCATAGGGATAGGTTTCAGGTACTTCATAAATTTTATGCTTGGGTTACTGGTGGTGAATATGGTTCTAAAGAGCAGGCTATGGTACGGAGGTTTCGGAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGCTGCTGAATATAAGAATCATCAGGAGAATGCGTTATTATTGTATATGGCTTGTACTCATGCTTCAAATCCTGTATATGCGACTCTTAAATGTCGTATTTATTTCTATGACAGTGTATCGAATTAA
Protein Sequence MKRPGDIVISTPVSKVRRRLNFDSPYSARVPANTVRISRKRIWASRPMYRKPKIYRMYRSPDVPKGCEGPCKVQSYEARHDVKHTGTVLCCSDVTRGTGLTHRVGKRFTIKSIYILGKIWMDENIKKKNHTNIVMFYLVRDRRPSDKPYEFGSVFNMFDNEPATATVKMDHRDRFQVLHKFYAWVTGGEYGSKEQAMVRRFRKIYHPVVYNNQEAAEYKNHQENALLLYMACTHASNPVYATLKCRIYFYDSVSN

NCBI Accession YP_010087826.1
Location 1081-1485
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAATGGCGTCTATATCTCCGACGTACCGAATCCCCTATATTTCAAAATTTTATACCACCACAGCAGACCATTCCGGACGGGACACGACATAGTAGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGAACTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAAATATCAGTTTATTAAATATGTAAACCAGTTGGGTGCTATTAGCTTAAATATTTGTATTAGAGCTGCAGAACATGTACTGTATAATGTATTGGAAGGCACAATTGAAGTGCAAGAAGATCATGATATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGENITAAQSMNGVYISDVPNPLYFKILYHHSRPFRTGHDIVVVQVRFNHNLKKALGILKCFLNFKIFTRLQPQTSHFLRVFKYQFIKYVNQLGAISLNICIRAAEHVLYNVLEGTIEVQEDHDIKFKFY

NCBI Accession YP_010087827.1
Location 1226-1651
Gene Name AC2
Protein Name transactivator protein
Coding Region ATGCCAAGTTCTTCACCCTCGAGAGTCCCTTATATTCCACCACCACAAGTTCCAATCAAGGTACAACACAAGATAGCCAAGCAGACGAAGCGAACGACAATCAGGAGGAAGAGAATAGATCTCCGGTGCGGTTGCAGCTACTATCTGAGCATTGACTGCCATAATCATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAATGGCGTCTATATCTCCGACGTACCGAATCCCCTATATTTCAAAATTTTATACCACCACAGCAGACCATTCCGGACGGGACACGACATAGTAGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGAACTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAA
Protein Sequence MPSSSPSRVPYIPPPQVPIKVQHKIAKQTKRTTIRRKRIDLRCGCSYYLSIDCHNHGFSHRGEYHCSSVNEWRLYLRRTESPIFQNFIPPQQTIPDGTRHSSGPSQIQPQPQEGVGDSEVFSELQDLHSFTTSDIAFLKSI

NCBI Accession YP_010087828.1
Location 1497-2639
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGGCTCCTCCACGTCGCTTCAAAATTCAAGCCAAAAATTATTTCCTCACATATCCAAAATGTCCCCTCTCTAAAGAAGAAGCTCTCGCCCAAATTCGTGCAATTGAAACACAGACGAATAAAAAATTCATTGAAATTGCCAGAGAGCTTCACGAAGATGGGCAACCTCACCTCCATATTCTCATTCAATTCGAAGGCAAACTCACATGCACGAATAACAGATTCTTCGATCTTAAGGCCACAGGCAGGGGATCACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCGGACGTTAAATCATACATCGAGAAGGACGGCGATACACTCAAATGGGGAGAATTCCAGGTAGATGGACGAAGTGCCAGAGGCGGTTGCCAAAATGCAAACGATGCATGTGCAGATGCATTAAATGCAAATACAGCAGATGCGGCACTCGCAATAATCAGAGAAAAACTGCCGAAGGATTACATATTCCAATATCATAATCTGAAAGCAAATCTCGAGAGGATATTCCAAGTTCCACCTCCTCCTTACGTGAGTCCATATGCTAATGCAACTTACAGCAACGTGCCTGAAGAGATAACACAATGGGTTCACGAAAATATCAAGGATTCCGCTGCGCGGCCATGGAGACCAATATCAGCAGTCATAGAGGGAGATAGTCGTACCGGCAAGACTATTTGGGCGCGGAGTCTGGGTCCACATAATTACCTGTGTGGACACCTCGACTTATCCCCAAAGGTATTTTCAAATTCAGCATGGTACAACATTATTGATGATGTTGACCCCCACTACCTAAAGCACTTTAAAGAGTTGATGGGCGCCCAAAGGGATTGGCAAAGCAACACAAAATACGGGAAACCAATTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCAGGTCATAATTCTTCTTATAAATCATATTTGAATGAGGAGAAGAATGCACAGCTAAAGGCCTGGGCTGAAAAGAATGCCAAGTTCTTCACCCTCGAGAGTCCCTTATATTCCACCACCACAAGTTCCAATCAAGGTACAACACAAGATAGCCAAGCAGACGAAGCGAACGACAATCAGGAGGAAGAGAATAGATCTCCGGTGCGGTTGCAGCTACTATCTGAGCATTGA
Protein Sequence MAPPRRFKIQAKNYFLTYPKCPLSKEEALAQIRAIETQTNKKFIEIARELHEDGQPHLHILIQFEGKLTCTNNRFFDLKATGRGSHYHPNIQGVKSSSDVKSYIEKDGDTLKWGEFQVDGRSARGGCQNANDACADALNANTADAALAIIREKLPKDYIFQYHNLKANLERIFQVPPPPYVSPYANATYSNVPEEITQWVHENIKDSAARPWRPISAVIEGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFSNSAWYNIIDDVDPHYLKHFKELMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGHNSSYKSYLNEEKNAQLKAWAEKNAKFFTLESPLYSTTTSSNQGTTQDSQADEANDNQEEENRSPVRLQLLSEH

NCBI Accession YP_010087829.1
Location 2285-2482
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGCAACCTCACCTCCATATTCTCATTCAATTCGAAGGCAAACTCACATGCACGAATAACAGATTCTTCGATCTTAAGGCCACAGGCAGGGGATCACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCGGACGTTAAATCATACATCGAGAAGGACGGCGATACACTCAAATGGGGAGAATTCCAGGTAG
Protein Sequence MGNLTSIFSFNSKANSHARITDSSILRPQAGDHITIRTFRELNQARTLNHTSRRTAIHSNGENSR

References More References in PubMed

1

African Basil (Ocimum gratissimum) Is a Reservoir of Divergent Begomoviruses in Uganda.

Mollel HG, et al.  Plant Dis. 2020 Mar;104(3):853-859. doi: 10.1094/PDIS-08-19-1675-RE. Epub 2020 Jan 7.

PMID: 31910114

2

First Report of Cucumber mosaic virus and Turnip vein-clearing virus in Dichondra repens in France, Italy, and China.

Cardin L, et al.  Plant Dis. 2009 Feb;93(2):201. doi: 10.1094/PDIS-93-2-0201B.

PMID: 30764126