Ocimum yellow vein virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCCCGCCCCGCCCGCATCGACGCCCCCTTCTCGCGCGTGTCTCCCACATCGAACACGTGGCGCTCTATATGCGTGTTTTACGTTGTTTGTTATTGTATATGTATTTTATTAGTGAAGTACGATGTCTTCGTATTTAGGAACGATGTGGGACCCCTTGGAGAATGAGTTCCCGGAGACCGTCCATGGTTTTCGGTGTATGCTAGCCGTGAAATATCTTCTGTTGGTGGAGTCTACGTATGAACCTGATACCCTAGGTCGTGAGCTCATACGCGATCTCATACGTTGTTTGCGTGCTTCGTCTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGAAGGTCCGTGTAAGGTCCAGTCGTATGAGGCCCGTCATGATGTCAAGCATACTGGAACTGTTTTGTGTTGTTCTGATGTTACACGTGGTACTGGTTTGACTCACCGTGTTGGTAAGAGATTTACTATTAAGTCAATTTACATTCTGGGCAAGATTTGGATGGATGAGAATATTAAGAAGAAGAATCATACGAACATCGTCATGTTCTATCTTGTTCGTGATCGACGACCGTCTGACAAACCTTATGAATTTGGTTCTGTATTTAATATGTTTGATAATGAGCCTGCTACGGCGACAGTTAAGATGGATCATAGGGATAGGTTTCAGGTACTTCATAAATTTTATGCTTGGGTTACTGGTGGTGAATATGGTTCTAAAGAGCAGGCTATGGTACGGAGGTTTCGGAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGCTGCTGAATATAAGAATCATCAGGAGAATGCGTTATTATTGTATATGGCTTGTACTCATGCTTCAAATCCTGTATATGCGACTCTTAAATGTCGTATTTATTTCTATGACAGTGTATCGAATTAATAAAATTTGAATTTTATATCATGATCTTCTTGCACTTCAATTGTGCCTTCCAATACATTATACAGTACATGTTCTGCAGCTCTAATACAAATATTTAAGCTAATAGCACCCAACTGGTTTACATATTTAATAAACTGATATTTAAATACTCTTAAGAAATGCGATGTCTGAGGTTGTAAACGAGTGAAGATCTTGAAGTTCAGAAAACACTTCAGAATCCCCAACGCCTTCTTGAGGTTGTGGTTGAATCTGACTTGGACCACTACTATGTCGTGTCCCGTCCGGAATGGTCTGCTGTGGTGGTATAAAATTTTGAAATATAGGGGATTCGGTACGTCGGAGATATAGACGCCATTCATTGACTGAGCTGCAGTGATATTCTCCCCTGTGCGAGAATCCATGATTATGGCAGTCAATGCTCAGATAGTAGCTGCAACCGCACCGGAGATCTATTCTCTTCCTCCTGATTGTCGTTCGCTTCGTCTGCTTGGCTATCTTGTGTTGTACCTTGATTGGAACTTGTGGTGGTGGAATATAAGGGACTCTCGAGGGTGAAGAACTTGGCATTCTTTTCAGCCCAGGCCTTTAGCTGTGCATTCTTCTCCTCATTCAAATATGATTTATAAGAAGAATTATGACCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTTTGCCAATCCCTTTGGGCGCCCATCAACTCTTTAAAGTGCTTTAGGTAGTGGGGGTCAACATCATCAATAATGTTGTACCATGCTGAATTTGAAAATACCTTTGGGGATAAGTCGAGGTGTCCACACAGGTAATTATGTGGACCCAGACTCCGCGCCCAAATAGTCTTGCCGGTACGACTATCTCCCTCTATGACTGCTGATATTGGTCTCCATGGCCGCGCAGCGGAATCCTTGATATTTTCGTGAACCCATTGTGTTATCTCTTCAGGCACGTTGCTGTAAGTTGCATTAGCATATGGACTCACGTAAGGAGGAGGTGGAACTTGGAATATCCTCTCGAGATTTGCTTTCAGATTATGATATTGGAATATGTAATCCTTCGGCAGTTTTTCTCTGATTATTGCGAGTGCCGCATCTGCTGTATTTGCATTTAATGCATCTGCACATGCATCGTTTGCATTTTGGCAACCGCCTCTGGCACTTCGTCCATCTACCTGGAATTCTCCCCATTTGAGTGTATCGCCGTCCTTCTCGATGTATGATTTAACGTCCGAGCTTGATTTAACTCCCTGAATGTTCGGATGGTAATGTGATCCCCTGCCTGTGGCCTTAAGATCGAAGAATCTGTTATTCGTGCATGTGAGTTTGCCTTCGAATTGAATGAGAATATGGAGGTGAGGTTGCCCATCTTCGTGAAGCTCTCTGGCAATTTCAATGAATTTTTTATTCGTCTGTGTTTCAATTGCACGAATTTGGGCGAGAGCTTCTTCTTTAGAGAGGGGACATTTTGGATATGTGAGGAAATAATTTTTGGCTTGAATTTTGAAGCGACGTGGAGGAGCCATTTATAGAGAGAGAATGTCTCCAATTGCTTTTCAGCTGAAGTCTCCATTGTATTGGAGACAATATATAGTGTCTCCAAATGGCATTATGGTAATTTTAAAAAGTAATAGGCTCCTTTCAAATCTAGTCGTACACGTGGGCTCATATGCGGCCATCCGTTTAATATT
Gene Information
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NCBI Accession
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YP_010087824.1
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Location
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133-519 |
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Gene Name
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AV2 |
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Protein Name
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precoat protein |
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Coding Region
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ATGTCTTCGTATTTAGGAACGATGTGGGACCCCTTGGAGAATGAGTTCCCGGAGACCGTCCATGGTTTTCGGTGTATGCTAGCCGTGAAATATCTTCTGTTGGTGGAGTCTACGTATGAACCTGATACCCTAGGTCGTGAGCTCATACGCGATCTCATACGTTGTTTGCGTGCTTCGTCTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGA |
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Protein Sequence
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MSSYLGTMWDPLENEFPETVHGFRCMLAVKYLLLVESTYEPDTLGRELIRDLIRCLRASSYNEASWRYSNFHTRFQGSSSSEFRQPVFRPCTCQHCPYFQKTNMGLSSYVQKAQDIPDVQKPGCSKGL |
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NCBI Accession
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YP_010087825.1
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Location
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317-1084 |
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Gene Name
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AV1 |
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Protein Name
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coat protein |
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Coding Region
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ATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGAAGGTCCGTGTAAGGTCCAGTCGTATGAGGCCCGTCATGATGTCAAGCATACTGGAACTGTTTTGTGTTGTTCTGATGTTACACGTGGTACTGGTTTGACTCACCGTGTTGGTAAGAGATTTACTATTAAGTCAATTTACATTCTGGGCAAGATTTGGATGGATGAGAATATTAAGAAGAAGAATCATACGAACATCGTCATGTTCTATCTTGTTCGTGATCGACGACCGTCTGACAAACCTTATGAATTTGGTTCTGTATTTAATATGTTTGATAATGAGCCTGCTACGGCGACAGTTAAGATGGATCATAGGGATAGGTTTCAGGTACTTCATAAATTTTATGCTTGGGTTACTGGTGGTGAATATGGTTCTAAAGAGCAGGCTATGGTACGGAGGTTTCGGAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGCTGCTGAATATAAGAATCATCAGGAGAATGCGTTATTATTGTATATGGCTTGTACTCATGCTTCAAATCCTGTATATGCGACTCTTAAATGTCGTATTTATTTCTATGACAGTGTATCGAATTAA |
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Protein Sequence
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MKRPGDIVISTPVSKVRRRLNFDSPYSARVPANTVRISRKRIWASRPMYRKPKIYRMYRSPDVPKGCEGPCKVQSYEARHDVKHTGTVLCCSDVTRGTGLTHRVGKRFTIKSIYILGKIWMDENIKKKNHTNIVMFYLVRDRRPSDKPYEFGSVFNMFDNEPATATVKMDHRDRFQVLHKFYAWVTGGEYGSKEQAMVRRFRKIYHPVVYNNQEAAEYKNHQENALLLYMACTHASNPVYATLKCRIYFYDSVSN |
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NCBI Accession
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YP_010087826.1
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Location
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1081-1485 |
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Gene Name
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AC3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAATGGCGTCTATATCTCCGACGTACCGAATCCCCTATATTTCAAAATTTTATACCACCACAGCAGACCATTCCGGACGGGACACGACATAGTAGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGAACTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAAATATCAGTTTATTAAATATGTAAACCAGTTGGGTGCTATTAGCTTAAATATTTGTATTAGAGCTGCAGAACATGTACTGTATAATGTATTGGAAGGCACAATTGAAGTGCAAGAAGATCATGATATAAAATTCAAATTTTATTAA |
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Protein Sequence
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MDSRTGENITAAQSMNGVYISDVPNPLYFKILYHHSRPFRTGHDIVVVQVRFNHNLKKALGILKCFLNFKIFTRLQPQTSHFLRVFKYQFIKYVNQLGAISLNICIRAAEHVLYNVLEGTIEVQEDHDIKFKFY |
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NCBI Accession
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YP_010087827.1
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Location
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1226-1651 |
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Gene Name
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AC2 |
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Protein Name
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transactivator protein |
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Coding Region
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ATGCCAAGTTCTTCACCCTCGAGAGTCCCTTATATTCCACCACCACAAGTTCCAATCAAGGTACAACACAAGATAGCCAAGCAGACGAAGCGAACGACAATCAGGAGGAAGAGAATAGATCTCCGGTGCGGTTGCAGCTACTATCTGAGCATTGACTGCCATAATCATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAATGGCGTCTATATCTCCGACGTACCGAATCCCCTATATTTCAAAATTTTATACCACCACAGCAGACCATTCCGGACGGGACACGACATAGTAGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGAACTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAA |
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Protein Sequence
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MPSSSPSRVPYIPPPQVPIKVQHKIAKQTKRTTIRRKRIDLRCGCSYYLSIDCHNHGFSHRGEYHCSSVNEWRLYLRRTESPIFQNFIPPQQTIPDGTRHSSGPSQIQPQPQEGVGDSEVFSELQDLHSFTTSDIAFLKSI |
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NCBI Accession
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YP_010087828.1
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Location
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1497-2639 |
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Gene Name
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AC1 |
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Protein Name
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replication associated protein |
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Coding Region
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ATGGCTCCTCCACGTCGCTTCAAAATTCAAGCCAAAAATTATTTCCTCACATATCCAAAATGTCCCCTCTCTAAAGAAGAAGCTCTCGCCCAAATTCGTGCAATTGAAACACAGACGAATAAAAAATTCATTGAAATTGCCAGAGAGCTTCACGAAGATGGGCAACCTCACCTCCATATTCTCATTCAATTCGAAGGCAAACTCACATGCACGAATAACAGATTCTTCGATCTTAAGGCCACAGGCAGGGGATCACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCGGACGTTAAATCATACATCGAGAAGGACGGCGATACACTCAAATGGGGAGAATTCCAGGTAGATGGACGAAGTGCCAGAGGCGGTTGCCAAAATGCAAACGATGCATGTGCAGATGCATTAAATGCAAATACAGCAGATGCGGCACTCGCAATAATCAGAGAAAAACTGCCGAAGGATTACATATTCCAATATCATAATCTGAAAGCAAATCTCGAGAGGATATTCCAAGTTCCACCTCCTCCTTACGTGAGTCCATATGCTAATGCAACTTACAGCAACGTGCCTGAAGAGATAACACAATGGGTTCACGAAAATATCAAGGATTCCGCTGCGCGGCCATGGAGACCAATATCAGCAGTCATAGAGGGAGATAGTCGTACCGGCAAGACTATTTGGGCGCGGAGTCTGGGTCCACATAATTACCTGTGTGGACACCTCGACTTATCCCCAAAGGTATTTTCAAATTCAGCATGGTACAACATTATTGATGATGTTGACCCCCACTACCTAAAGCACTTTAAAGAGTTGATGGGCGCCCAAAGGGATTGGCAAAGCAACACAAAATACGGGAAACCAATTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCAGGTCATAATTCTTCTTATAAATCATATTTGAATGAGGAGAAGAATGCACAGCTAAAGGCCTGGGCTGAAAAGAATGCCAAGTTCTTCACCCTCGAGAGTCCCTTATATTCCACCACCACAAGTTCCAATCAAGGTACAACACAAGATAGCCAAGCAGACGAAGCGAACGACAATCAGGAGGAAGAGAATAGATCTCCGGTGCGGTTGCAGCTACTATCTGAGCATTGA |
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Protein Sequence
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MAPPRRFKIQAKNYFLTYPKCPLSKEEALAQIRAIETQTNKKFIEIARELHEDGQPHLHILIQFEGKLTCTNNRFFDLKATGRGSHYHPNIQGVKSSSDVKSYIEKDGDTLKWGEFQVDGRSARGGCQNANDACADALNANTADAALAIIREKLPKDYIFQYHNLKANLERIFQVPPPPYVSPYANATYSNVPEEITQWVHENIKDSAARPWRPISAVIEGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFSNSAWYNIIDDVDPHYLKHFKELMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGHNSSYKSYLNEEKNAQLKAWAEKNAKFFTLESPLYSTTTSSNQGTTQDSQADEANDNQEEENRSPVRLQLLSEH |
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NCBI Accession
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YP_010087829.1
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Location
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2285-2482 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGGGCAACCTCACCTCCATATTCTCATTCAATTCGAAGGCAAACTCACATGCACGAATAACAGATTCTTCGATCTTAAGGCCACAGGCAGGGGATCACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCGGACGTTAAATCATACATCGAGAAGGACGGCGATACACTCAAATGGGGAGAATTCCAGGTAG |
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Protein Sequence
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MGNLTSIFSFNSKANSHARITDSSILRPQAGDHITIRTFRELNQARTLNHTSRRTAIHSNGENSR |