Ocimum mosaic virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_018589045.1
Isolate Uganda
Release date 2021/6/1
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_055593
ACCGGATGGCCGCCCGCAACCACGCCCCGACTCGCGCGTGTCTTACACATCGTACACGTGGCATTTTATGAGGGTTTCTCACGATGTATTTTGGTACGACGGTATTTTATTAGTAAAGTTCGCCATTTTACGTATTTATGTACGATGTGGGACCCCTTGGAGAATGAATTCCCGGATACCGTTCATGGATTCCGGTGTATGCTCGCCGTCAAATATCTTCTTCTGGTGGAGTCTAAGTATGAGCCGGATACTCTAGGTCGTGATCTCATACGTGATCTTATACGTTGTTTGCGTGCATCGAGTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGCTTCCAAAGTTCGGCGTCGTCTGAATTTCGACAGCCCATACTCCGCCCGTGTACCTGTCAGCACTGTCCGTACTTCCAGAAGACGAATATGGGCCTCGCGTCCTATGTACAGAAAGCCCAAGATATACCGGATTTACAGAAGCCCGGATGTTCCAAAGGGCTGTGAAGGTCCGTGTAAAGTTCAATCTTATGAGGCCCGTCATGATGTAAAGCATACTGGTACTGTATTATGTTGCTCCGACGTTACACGTGGTAGTGGTTTGACTCACCGCGTTGGTAAGAGGTTTACTATCAAGTCTATTTACATATTGGGTAAGATCTGGATGGATGAGAATATCAAGAAGAAGAATCACACTAATATTGTCATGTTTTATCTTGTTCGGGATCGTCGGCCGTCTGATAAACCTTATGAATTTGGTTCTGTGTTTAACATGTTTGACAATGAGCCGGCTACTGCGACAGTGAAGATGGATCATCGGGATAGGTTTCAGGTTTTGCATAAGTTTTATGGTTGGGTTACCGGTGGTGAATACGCGTCTAAAGAGCAGGCGATGATTAGGAGGTTTTATAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGGTGCTGAATACAAGAATCATCAGGAGAACGCTTTGTTATTGTATATGGCTTGTACTCATGCTTCTAATCCTGTGTACGCGACTCTTAAATGTCGCATATATTTTTATGACAGTGTGTCGAATTAATAAATTTTGAATTTTATATCATGATCTTCTTGCACTTCAATTGTGCCTTGCATTACATTGTACAATACATGATCAGCAGATCTAATACAAATATTTAAGCTAATAGCCCCTAATTGGTTTACATATTTCATGAACTGATATCTAAATACTCTTAAGAAATGCGATGTCTGAGGTTGTAAACGAGTGAAGATCTTGAAGGTCAGAAAACACTTCAGAATCCCCAACGCCTTCTTGAGGTTGTGGTTGAATCTGACTTGGACCACAATTATGTCGTGTCCCGTCTGGAATGGTCTGCTGTGGTGGTATAGAATTTTGAAATATAGGGGATTCGGCACGTCGGAGGTATAGACGCCACTCATTGACTGAGCTGCAGTGATATTCTCCCCTGTGCGAGAATCCATGGTTGTGGCAGTCAATGCTCAGAAAATAGCTGCAACCGCACCGGAGATCTATCCTCTTCCGCCTGATTGTTGTACGCTTGGTCTGCTTGGCTATCTTGTGTTGTACCTTGATTGGTACCTGCTGAATTGGAGTATAGGGGACTCTCGAGGGTGAAGAACTTGGCATTCTTTTCAGCCCAGGCCTTTAGCTGCTCATTCTTATCCTCATTCAGATATGATTTATAAGAAGAATTATGACCTGGATTGCATAAGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAATCACGTTGGGCCCCCATCAACTCTTTAAAATGCTTTAGGTAGTGGGGGTCAACATCATCAATAATGTTGTACCATGCTGAATTTGAAAATACCTTTGGGGATAGATCGAGGTGCCCACATAGATAATTATGGGGACCCAATCCCCGCGCCCAAATAGTTTTGCCGGTACGACTATCCCCCTCTATTACGATTGAGATTGGTCTCCACGGCCGCGCAGCGGAATCCTTAACATTTTCGTCAACCCAATTCCTTATTTCTTCAGGCACATTGTTGAATGTTGCATTAGCATATGGACTTACATATGGAACAGGTGGCAACTGGAAGATTTTCTCGAGATTTGCTTTCAGATTGTGGTATTGGAATATGTAATCCTTCGGCAGTTTTTCTCGAATTATTGCGAGTGCTGCTTCTGCCGAGTTAGCATTTAATGCATCAGCACATGCATCATTTGCATTTTGACAACCTCCTCTTGCACTTCTACCATCTACTTGGAATTCTCCCCATTTGAGTGTGTCTCCGTCCTTCTCAATGTATGATTTGACATCTGAGCTTGATTTAACTCCCTGAATGTTCGGATGGTAATGTGTTCCCCTGGTTGTGGCTTGAAGATCGAAGAATCGGTTATTCGTGCATGTGAATTTACCTTCGAATTGAATGAGAATGTGGAGATGAGGTTGCCCATCTTCGTGAAGCTCTCTGGCAATTTCTATGAATTTTTTATTCGTGTGTGTTTCAATTGCACGAATTTGAGTGAGGGCTTCTTCTTTAGAGAGGGAACATTTGGGATATGTGAGGAAGTAATTTTTGGCTTGAATTTTGAAGCGACGTGGAGGAGCCATTTATAGAGAGAGAATGTCTCCAATTGCTTTTCAGCTGAAGTCTCTATTGTATTGGAGACAATATATAGTGTCTCCAAATGGCATTATTGTAATTTGTAAAAGTAAGACGCTCCTTCATATCCCATCGTCCACGTGGGATCTTTTGCGGCCATCCGTTTAATATT

Gene Information

NCBI Accession YP_010087830.1
Location 145-510
Gene Name AV2
Protein Name precoat protein
Coding Region ATGTGGGACCCCTTGGAGAATGAATTCCCGGATACCGTTCATGGATTCCGGTGTATGCTCGCCGTCAAATATCTTCTTCTGGTGGAGTCTAAGTATGAGCCGGATACTCTAGGTCGTGATCTCATACGTGATCTTATACGTTGTTTGCGTGCATCGAGTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGCTTCCAAAGTTCGGCGTCGTCTGAATTTCGACAGCCCATACTCCGCCCGTGTACCTGTCAGCACTGTCCGTACTTCCAGAAGACGAATATGGGCCTCGCGTCCTATGTACAGAAAGCCCAAGATATACCGGATTTACAGAAGCCCGGATGTTCCAAAGGGCTGTGA
Protein Sequence MWDPLENEFPDTVHGFRCMLAVKYLLLVESKYEPDTLGRDLIRDLIRCLRASSYNEASWRYSNFHTRFQSSASSEFRQPILRPCTCQHCPYFQKTNMGLASYVQKAQDIPDLQKPGCSKGL

NCBI Accession YP_010087831.1
Location 308-1075
Gene Name AV1
Protein Name coat protein
Coding Region ATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGCTTCCAAAGTTCGGCGTCGTCTGAATTTCGACAGCCCATACTCCGCCCGTGTACCTGTCAGCACTGTCCGTACTTCCAGAAGACGAATATGGGCCTCGCGTCCTATGTACAGAAAGCCCAAGATATACCGGATTTACAGAAGCCCGGATGTTCCAAAGGGCTGTGAAGGTCCGTGTAAAGTTCAATCTTATGAGGCCCGTCATGATGTAAAGCATACTGGTACTGTATTATGTTGCTCCGACGTTACACGTGGTAGTGGTTTGACTCACCGCGTTGGTAAGAGGTTTACTATCAAGTCTATTTACATATTGGGTAAGATCTGGATGGATGAGAATATCAAGAAGAAGAATCACACTAATATTGTCATGTTTTATCTTGTTCGGGATCGTCGGCCGTCTGATAAACCTTATGAATTTGGTTCTGTGTTTAACATGTTTGACAATGAGCCGGCTACTGCGACAGTGAAGATGGATCATCGGGATAGGTTTCAGGTTTTGCATAAGTTTTATGGTTGGGTTACCGGTGGTGAATACGCGTCTAAAGAGCAGGCGATGATTAGGAGGTTTTATAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGGTGCTGAATACAAGAATCATCAGGAGAACGCTTTGTTATTGTATATGGCTTGTACTCATGCTTCTAATCCTGTGTACGCGACTCTTAAATGTCGCATATATTTTTATGACAGTGTGTCGAATTAA
Protein Sequence MKRPGDIVISTPASKVRRRLNFDSPYSARVPVSTVRTSRRRIWASRPMYRKPKIYRIYRSPDVPKGCEGPCKVQSYEARHDVKHTGTVLCCSDVTRGSGLTHRVGKRFTIKSIYILGKIWMDENIKKKNHTNIVMFYLVRDRRPSDKPYEFGSVFNMFDNEPATATVKMDHRDRFQVLHKFYGWVTGGEYASKEQAMIRRFYKIYHPVVYNNQEGAEYKNHQENALLLYMACTHASNPVYATLKCRIYFYDSVSN

NCBI Accession YP_010087832.1
Location 1072-1476
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAGTGGCGTCTATACCTCCGACGTGCCGAATCCCCTATATTTCAAAATTCTATACCACCACAGCAGACCATTCCAGACGGGACACGACATAATTGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGACCTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAGATATCAGTTCATGAAATATGTAAACCAATTAGGGGCTATTAGCTTAAATATTTGTATTAGATCTGCTGATCATGTATTGTACAATGTAATGCAAGGCACAATTGAAGTGCAAGAAGATCATGATATAAAATTCAAAATTTATTAA
Protein Sequence MDSRTGENITAAQSMSGVYTSDVPNPLYFKILYHHSRPFQTGHDIIVVQVRFNHNLKKALGILKCFLTFKIFTRLQPQTSHFLRVFRYQFMKYVNQLGAISLNICIRSADHVLYNVMQGTIEVQEDHDIKFKIY

NCBI Accession YP_010087833.1
Location 1217-1642
Gene Name AC2
Protein Name transactivator protein
Coding Region ATGCCAAGTTCTTCACCCTCGAGAGTCCCCTATACTCCAATTCAGCAGGTACCAATCAAGGTACAACACAAGATAGCCAAGCAGACCAAGCGTACAACAATCAGGCGGAAGAGGATAGATCTCCGGTGCGGTTGCAGCTATTTTCTGAGCATTGACTGCCACAACCATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAGTGGCGTCTATACCTCCGACGTGCCGAATCCCCTATATTTCAAAATTCTATACCACCACAGCAGACCATTCCAGACGGGACACGACATAATTGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGACCTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAG
Protein Sequence MPSSSPSRVPYTPIQQVPIKVQHKIAKQTKRTTIRRKRIDLRCGCSYFLSIDCHNHGFSHRGEYHCSSVNEWRLYLRRAESPIFQNSIPPQQTIPDGTRHNCGPSQIQPQPQEGVGDSEVFSDLQDLHSFTTSDIAFLKSI

NCBI Accession YP_010087834.1
Location 1488-2630
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGGCTCCTCCACGTCGCTTCAAAATTCAAGCCAAAAATTACTTCCTCACATATCCCAAATGTTCCCTCTCTAAAGAAGAAGCCCTCACTCAAATTCGTGCAATTGAAACACACACGAATAAAAAATTCATAGAAATTGCCAGAGAGCTTCACGAAGATGGGCAACCTCATCTCCACATTCTCATTCAATTCGAAGGTAAATTCACATGCACGAATAACCGATTCTTCGATCTTCAAGCCACAACCAGGGGAACACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCAGATGTCAAATCATACATTGAGAAGGACGGAGACACACTCAAATGGGGAGAATTCCAAGTAGATGGTAGAAGTGCAAGAGGAGGTTGTCAAAATGCAAATGATGCATGTGCTGATGCATTAAATGCTAACTCGGCAGAAGCAGCACTCGCAATAATTCGAGAAAAACTGCCGAAGGATTACATATTCCAATACCACAATCTGAAAGCAAATCTCGAGAAAATCTTCCAGTTGCCACCTGTTCCATATGTAAGTCCATATGCTAATGCAACATTCAACAATGTGCCTGAAGAAATAAGGAATTGGGTTGACGAAAATGTTAAGGATTCCGCTGCGCGGCCGTGGAGACCAATCTCAATCGTAATAGAGGGGGATAGTCGTACCGGCAAAACTATTTGGGCGCGGGGATTGGGTCCCCATAATTATCTATGTGGGCACCTCGATCTATCCCCAAAGGTATTTTCAAATTCAGCATGGTACAACATTATTGATGATGTTGACCCCCACTACCTAAAGCATTTTAAAGAGTTGATGGGGGCCCAACGTGATTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGTGGCATTCCCACTATCTTCTTATGCAATCCAGGTCATAATTCTTCTTATAAATCATATCTGAATGAGGATAAGAATGAGCAGCTAAAGGCCTGGGCTGAAAAGAATGCCAAGTTCTTCACCCTCGAGAGTCCCCTATACTCCAATTCAGCAGGTACCAATCAAGGTACAACACAAGATAGCCAAGCAGACCAAGCGTACAACAATCAGGCGGAAGAGGATAGATCTCCGGTGCGGTTGCAGCTATTTTCTGAGCATTGA
Protein Sequence MAPPRRFKIQAKNYFLTYPKCSLSKEEALTQIRAIETHTNKKFIEIARELHEDGQPHLHILIQFEGKFTCTNNRFFDLQATTRGTHYHPNIQGVKSSSDVKSYIEKDGDTLKWGEFQVDGRSARGGCQNANDACADALNANSAEAALAIIREKLPKDYIFQYHNLKANLEKIFQLPPVPYVSPYANATFNNVPEEIRNWVDENVKDSAARPWRPISIVIEGDSRTGKTIWARGLGPHNYLCGHLDLSPKVFSNSAWYNIIDDVDPHYLKHFKELMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGHNSSYKSYLNEDKNEQLKAWAEKNAKFFTLESPLYSNSAGTNQGTTQDSQADQAYNNQAEEDRSPVRLQLFSEH

NCBI Accession YP_010087835.1
Location 2276-2473
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGCAACCTCATCTCCACATTCTCATTCAATTCGAAGGTAAATTCACATGCACGAATAACCGATTCTTCGATCTTCAAGCCACAACCAGGGGAACACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCAGATGTCAAATCATACATTGAGAAGGACGGAGACACACTCAAATGGGGAGAATTCCAAGTAG
Protein Sequence MGNLISTFSFNSKVNSHARITDSSIFKPQPGEHITIRTFRELNQAQMSNHTLRRTETHSNGENSK

References More References in PubMed

1

Ocimum basilicum-Mediated Synthesis of Silver Nanoparticles Induces Innate Immune Responses against Cucumber Mosaic Virus in Squash.

Abdelkhalek A, et al.  Plants (Basel). 2022 Oct 13;11(20):2707. doi: 10.3390/plants11202707.

PMID: 36297731

2

First report of Cucumber mosaic virus infecting Ocimum gratissimum (L.) in Calabar, Cross River State, Nigeria.

Ekpiken EE, et al.  Virusdisease. 2021 Jun;32(2):375-377. doi: 10.1007/s13337-021-00662-x. Epub 2021 Apr 7.

PMID: 34423102

3

First Report of Alfalfa mosaic virus Infecting Basil (Ocimum basilicum) in California.

Wintermantel WM, et al.  Plant Dis. 2012 Feb;96(2):295. doi: 10.1094/PDIS-06-11-0516.

PMID: 30731822

4

First Record of Alfalfa mosaic virus in Teucrium fruticans in Italy.

Parrella G, et al.  Plant Dis. 2012 Feb;96(2):294. doi: 10.1094/PDIS-08-11-0674.

PMID: 30731813

5

First Report of Cucumber mosaic virus and Turnip vein-clearing virus in Dichondra repens in France, Italy, and China.

Cardin L, et al.  Plant Dis. 2009 Feb;93(2):201. doi: 10.1094/PDIS-93-2-0201B.

PMID: 30764126

6

First Report of a Disease of Peony Caused by Alfalfa mosaic virus.

Bellardi MG, et al.  Plant Dis. 2003 Jan;87(1):99. doi: 10.1094/PDIS.2003.87.1.99C.

PMID: 30812714

7

Araujia sericifera New Host of Alfalfa mosaic virus in Italy.

Parrella G, et al.  Plant Dis. 2013 Oct;97(10):1387. doi: 10.1094/PDIS-03-13-0300-PDN.

PMID: 30722152

8

African Basil (Ocimum gratissimum) Is a Reservoir of Divergent Begomoviruses in Uganda.

Mollel HG, et al.  Plant Dis. 2020 Mar;104(3):853-859. doi: 10.1094/PDIS-08-19-1675-RE. Epub 2020 Jan 7.

PMID: 31910114

9

First Record and Complete Nucleotide Sequence of Alfalfa mosaic virus from Lavandula stoechas in Italy.

Parrella G, et al.  Plant Dis. 2010 Jul;94(7):924. doi: 10.1094/PDIS-94-7-0924A.

PMID: 30743579

10

Natural Infection of Field-Grown Borage (Borago officinalis) by Alfalfa mosaic virus in Spain.

Mallor C, et al.  Plant Dis. 2002 Jun;86(6):698. doi: 10.1094/PDIS.2002.86.6.698A.

PMID: 30823267