Ocimum mosaic virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCCCGCAACCACGCCCCGACTCGCGCGTGTCTTACACATCGTACACGTGGCATTTTATGAGGGTTTCTCACGATGTATTTTGGTACGACGGTATTTTATTAGTAAAGTTCGCCATTTTACGTATTTATGTACGATGTGGGACCCCTTGGAGAATGAATTCCCGGATACCGTTCATGGATTCCGGTGTATGCTCGCCGTCAAATATCTTCTTCTGGTGGAGTCTAAGTATGAGCCGGATACTCTAGGTCGTGATCTCATACGTGATCTTATACGTTGTTTGCGTGCATCGAGTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGCTTCCAAAGTTCGGCGTCGTCTGAATTTCGACAGCCCATACTCCGCCCGTGTACCTGTCAGCACTGTCCGTACTTCCAGAAGACGAATATGGGCCTCGCGTCCTATGTACAGAAAGCCCAAGATATACCGGATTTACAGAAGCCCGGATGTTCCAAAGGGCTGTGAAGGTCCGTGTAAAGTTCAATCTTATGAGGCCCGTCATGATGTAAAGCATACTGGTACTGTATTATGTTGCTCCGACGTTACACGTGGTAGTGGTTTGACTCACCGCGTTGGTAAGAGGTTTACTATCAAGTCTATTTACATATTGGGTAAGATCTGGATGGATGAGAATATCAAGAAGAAGAATCACACTAATATTGTCATGTTTTATCTTGTTCGGGATCGTCGGCCGTCTGATAAACCTTATGAATTTGGTTCTGTGTTTAACATGTTTGACAATGAGCCGGCTACTGCGACAGTGAAGATGGATCATCGGGATAGGTTTCAGGTTTTGCATAAGTTTTATGGTTGGGTTACCGGTGGTGAATACGCGTCTAAAGAGCAGGCGATGATTAGGAGGTTTTATAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGGTGCTGAATACAAGAATCATCAGGAGAACGCTTTGTTATTGTATATGGCTTGTACTCATGCTTCTAATCCTGTGTACGCGACTCTTAAATGTCGCATATATTTTTATGACAGTGTGTCGAATTAATAAATTTTGAATTTTATATCATGATCTTCTTGCACTTCAATTGTGCCTTGCATTACATTGTACAATACATGATCAGCAGATCTAATACAAATATTTAAGCTAATAGCCCCTAATTGGTTTACATATTTCATGAACTGATATCTAAATACTCTTAAGAAATGCGATGTCTGAGGTTGTAAACGAGTGAAGATCTTGAAGGTCAGAAAACACTTCAGAATCCCCAACGCCTTCTTGAGGTTGTGGTTGAATCTGACTTGGACCACAATTATGTCGTGTCCCGTCTGGAATGGTCTGCTGTGGTGGTATAGAATTTTGAAATATAGGGGATTCGGCACGTCGGAGGTATAGACGCCACTCATTGACTGAGCTGCAGTGATATTCTCCCCTGTGCGAGAATCCATGGTTGTGGCAGTCAATGCTCAGAAAATAGCTGCAACCGCACCGGAGATCTATCCTCTTCCGCCTGATTGTTGTACGCTTGGTCTGCTTGGCTATCTTGTGTTGTACCTTGATTGGTACCTGCTGAATTGGAGTATAGGGGACTCTCGAGGGTGAAGAACTTGGCATTCTTTTCAGCCCAGGCCTTTAGCTGCTCATTCTTATCCTCATTCAGATATGATTTATAAGAAGAATTATGACCTGGATTGCATAAGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAATCACGTTGGGCCCCCATCAACTCTTTAAAATGCTTTAGGTAGTGGGGGTCAACATCATCAATAATGTTGTACCATGCTGAATTTGAAAATACCTTTGGGGATAGATCGAGGTGCCCACATAGATAATTATGGGGACCCAATCCCCGCGCCCAAATAGTTTTGCCGGTACGACTATCCCCCTCTATTACGATTGAGATTGGTCTCCACGGCCGCGCAGCGGAATCCTTAACATTTTCGTCAACCCAATTCCTTATTTCTTCAGGCACATTGTTGAATGTTGCATTAGCATATGGACTTACATATGGAACAGGTGGCAACTGGAAGATTTTCTCGAGATTTGCTTTCAGATTGTGGTATTGGAATATGTAATCCTTCGGCAGTTTTTCTCGAATTATTGCGAGTGCTGCTTCTGCCGAGTTAGCATTTAATGCATCAGCACATGCATCATTTGCATTTTGACAACCTCCTCTTGCACTTCTACCATCTACTTGGAATTCTCCCCATTTGAGTGTGTCTCCGTCCTTCTCAATGTATGATTTGACATCTGAGCTTGATTTAACTCCCTGAATGTTCGGATGGTAATGTGTTCCCCTGGTTGTGGCTTGAAGATCGAAGAATCGGTTATTCGTGCATGTGAATTTACCTTCGAATTGAATGAGAATGTGGAGATGAGGTTGCCCATCTTCGTGAAGCTCTCTGGCAATTTCTATGAATTTTTTATTCGTGTGTGTTTCAATTGCACGAATTTGAGTGAGGGCTTCTTCTTTAGAGAGGGAACATTTGGGATATGTGAGGAAGTAATTTTTGGCTTGAATTTTGAAGCGACGTGGAGGAGCCATTTATAGAGAGAGAATGTCTCCAATTGCTTTTCAGCTGAAGTCTCTATTGTATTGGAGACAATATATAGTGTCTCCAAATGGCATTATTGTAATTTGTAAAAGTAAGACGCTCCTTCATATCCCATCGTCCACGTGGGATCTTTTGCGGCCATCCGTTTAATATT
Gene Information
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NCBI Accession
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YP_010087830.1
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Location
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145-510 |
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Gene Name
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AV2 |
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Protein Name
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precoat protein |
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Coding Region
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ATGTGGGACCCCTTGGAGAATGAATTCCCGGATACCGTTCATGGATTCCGGTGTATGCTCGCCGTCAAATATCTTCTTCTGGTGGAGTCTAAGTATGAGCCGGATACTCTAGGTCGTGATCTCATACGTGATCTTATACGTTGTTTGCGTGCATCGAGTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGCTTCCAAAGTTCGGCGTCGTCTGAATTTCGACAGCCCATACTCCGCCCGTGTACCTGTCAGCACTGTCCGTACTTCCAGAAGACGAATATGGGCCTCGCGTCCTATGTACAGAAAGCCCAAGATATACCGGATTTACAGAAGCCCGGATGTTCCAAAGGGCTGTGA |
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Protein Sequence
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MWDPLENEFPDTVHGFRCMLAVKYLLLVESKYEPDTLGRDLIRDLIRCLRASSYNEASWRYSNFHTRFQSSASSEFRQPILRPCTCQHCPYFQKTNMGLASYVQKAQDIPDLQKPGCSKGL |
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NCBI Accession
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YP_010087831.1
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Location
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308-1075 |
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Gene Name
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AV1 |
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Protein Name
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coat protein |
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Coding Region
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ATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGCTTCCAAAGTTCGGCGTCGTCTGAATTTCGACAGCCCATACTCCGCCCGTGTACCTGTCAGCACTGTCCGTACTTCCAGAAGACGAATATGGGCCTCGCGTCCTATGTACAGAAAGCCCAAGATATACCGGATTTACAGAAGCCCGGATGTTCCAAAGGGCTGTGAAGGTCCGTGTAAAGTTCAATCTTATGAGGCCCGTCATGATGTAAAGCATACTGGTACTGTATTATGTTGCTCCGACGTTACACGTGGTAGTGGTTTGACTCACCGCGTTGGTAAGAGGTTTACTATCAAGTCTATTTACATATTGGGTAAGATCTGGATGGATGAGAATATCAAGAAGAAGAATCACACTAATATTGTCATGTTTTATCTTGTTCGGGATCGTCGGCCGTCTGATAAACCTTATGAATTTGGTTCTGTGTTTAACATGTTTGACAATGAGCCGGCTACTGCGACAGTGAAGATGGATCATCGGGATAGGTTTCAGGTTTTGCATAAGTTTTATGGTTGGGTTACCGGTGGTGAATACGCGTCTAAAGAGCAGGCGATGATTAGGAGGTTTTATAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGGTGCTGAATACAAGAATCATCAGGAGAACGCTTTGTTATTGTATATGGCTTGTACTCATGCTTCTAATCCTGTGTACGCGACTCTTAAATGTCGCATATATTTTTATGACAGTGTGTCGAATTAA |
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Protein Sequence
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MKRPGDIVISTPASKVRRRLNFDSPYSARVPVSTVRTSRRRIWASRPMYRKPKIYRIYRSPDVPKGCEGPCKVQSYEARHDVKHTGTVLCCSDVTRGSGLTHRVGKRFTIKSIYILGKIWMDENIKKKNHTNIVMFYLVRDRRPSDKPYEFGSVFNMFDNEPATATVKMDHRDRFQVLHKFYGWVTGGEYASKEQAMIRRFYKIYHPVVYNNQEGAEYKNHQENALLLYMACTHASNPVYATLKCRIYFYDSVSN |
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NCBI Accession
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YP_010087832.1
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Location
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1072-1476 |
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Gene Name
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AC3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAGTGGCGTCTATACCTCCGACGTGCCGAATCCCCTATATTTCAAAATTCTATACCACCACAGCAGACCATTCCAGACGGGACACGACATAATTGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGACCTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAGATATCAGTTCATGAAATATGTAAACCAATTAGGGGCTATTAGCTTAAATATTTGTATTAGATCTGCTGATCATGTATTGTACAATGTAATGCAAGGCACAATTGAAGTGCAAGAAGATCATGATATAAAATTCAAAATTTATTAA |
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Protein Sequence
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MDSRTGENITAAQSMSGVYTSDVPNPLYFKILYHHSRPFQTGHDIIVVQVRFNHNLKKALGILKCFLTFKIFTRLQPQTSHFLRVFRYQFMKYVNQLGAISLNICIRSADHVLYNVMQGTIEVQEDHDIKFKIY |
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NCBI Accession
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YP_010087833.1
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Location
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1217-1642 |
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Gene Name
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AC2 |
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Protein Name
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transactivator protein |
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Coding Region
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ATGCCAAGTTCTTCACCCTCGAGAGTCCCCTATACTCCAATTCAGCAGGTACCAATCAAGGTACAACACAAGATAGCCAAGCAGACCAAGCGTACAACAATCAGGCGGAAGAGGATAGATCTCCGGTGCGGTTGCAGCTATTTTCTGAGCATTGACTGCCACAACCATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAGTGGCGTCTATACCTCCGACGTGCCGAATCCCCTATATTTCAAAATTCTATACCACCACAGCAGACCATTCCAGACGGGACACGACATAATTGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGACCTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAG |
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Protein Sequence
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MPSSSPSRVPYTPIQQVPIKVQHKIAKQTKRTTIRRKRIDLRCGCSYFLSIDCHNHGFSHRGEYHCSSVNEWRLYLRRAESPIFQNSIPPQQTIPDGTRHNCGPSQIQPQPQEGVGDSEVFSDLQDLHSFTTSDIAFLKSI |
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NCBI Accession
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YP_010087834.1
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Location
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1488-2630 |
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Gene Name
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AC1 |
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Protein Name
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replication associated protein |
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Coding Region
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ATGGCTCCTCCACGTCGCTTCAAAATTCAAGCCAAAAATTACTTCCTCACATATCCCAAATGTTCCCTCTCTAAAGAAGAAGCCCTCACTCAAATTCGTGCAATTGAAACACACACGAATAAAAAATTCATAGAAATTGCCAGAGAGCTTCACGAAGATGGGCAACCTCATCTCCACATTCTCATTCAATTCGAAGGTAAATTCACATGCACGAATAACCGATTCTTCGATCTTCAAGCCACAACCAGGGGAACACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCAGATGTCAAATCATACATTGAGAAGGACGGAGACACACTCAAATGGGGAGAATTCCAAGTAGATGGTAGAAGTGCAAGAGGAGGTTGTCAAAATGCAAATGATGCATGTGCTGATGCATTAAATGCTAACTCGGCAGAAGCAGCACTCGCAATAATTCGAGAAAAACTGCCGAAGGATTACATATTCCAATACCACAATCTGAAAGCAAATCTCGAGAAAATCTTCCAGTTGCCACCTGTTCCATATGTAAGTCCATATGCTAATGCAACATTCAACAATGTGCCTGAAGAAATAAGGAATTGGGTTGACGAAAATGTTAAGGATTCCGCTGCGCGGCCGTGGAGACCAATCTCAATCGTAATAGAGGGGGATAGTCGTACCGGCAAAACTATTTGGGCGCGGGGATTGGGTCCCCATAATTATCTATGTGGGCACCTCGATCTATCCCCAAAGGTATTTTCAAATTCAGCATGGTACAACATTATTGATGATGTTGACCCCCACTACCTAAAGCATTTTAAAGAGTTGATGGGGGCCCAACGTGATTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGTGGCATTCCCACTATCTTCTTATGCAATCCAGGTCATAATTCTTCTTATAAATCATATCTGAATGAGGATAAGAATGAGCAGCTAAAGGCCTGGGCTGAAAAGAATGCCAAGTTCTTCACCCTCGAGAGTCCCCTATACTCCAATTCAGCAGGTACCAATCAAGGTACAACACAAGATAGCCAAGCAGACCAAGCGTACAACAATCAGGCGGAAGAGGATAGATCTCCGGTGCGGTTGCAGCTATTTTCTGAGCATTGA |
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Protein Sequence
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MAPPRRFKIQAKNYFLTYPKCSLSKEEALTQIRAIETHTNKKFIEIARELHEDGQPHLHILIQFEGKFTCTNNRFFDLQATTRGTHYHPNIQGVKSSSDVKSYIEKDGDTLKWGEFQVDGRSARGGCQNANDACADALNANSAEAALAIIREKLPKDYIFQYHNLKANLEKIFQLPPVPYVSPYANATFNNVPEEIRNWVDENVKDSAARPWRPISIVIEGDSRTGKTIWARGLGPHNYLCGHLDLSPKVFSNSAWYNIIDDVDPHYLKHFKELMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGHNSSYKSYLNEDKNEQLKAWAEKNAKFFTLESPLYSNSAGTNQGTTQDSQADQAYNNQAEEDRSPVRLQLFSEH |
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NCBI Accession
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YP_010087835.1
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Location
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2276-2473 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGGGCAACCTCATCTCCACATTCTCATTCAATTCGAAGGTAAATTCACATGCACGAATAACCGATTCTTCGATCTTCAAGCCACAACCAGGGGAACACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCAGATGTCAAATCATACATTGAGAAGGACGGAGACACACTCAAATGGGGAGAATTCCAAGTAG |
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Protein Sequence
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MGNLISTFSFNSKVNSHARITDSSIFKPQPGEHITIRTFRELNQAQMSNHTLRRTETHSNGENSK |