Ocimum golden mosaic virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCCTTTGCTGCGTGGGCCCCCCTCCTCTTTTATGTCGCCCAATCATATTGGTGCCTGAATGCCTATATACGTCATTTGTCTGTATATACGTGGCGCCCAAGTATTGGTGTATTGTAAGATGTGGGATCCTCTCTTGAATGATTTCCCTGAAACGGCTCATGCCTTCCGTTCTATGCTTGCCGTGAAATACTTGCAGTGTATAGAACAAACGTATGAACCTGGTACATTGGGTCACGATTTAATTCGAGATCTTATTTTGGTTATTCGAGCTAAAGATTATGTCGAAGCGACCAGGAGATATAATCATTTCCACGCCCGTATCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCCTATACCAACCGTGTTGCTGTCCCCACTGCCCGAGGCATAGGCAGACAGCGTCTATGGAAGTATCGGCCCATGTATCGAAAGCCCAGGATGTACAAAATGTACAAAAGTCGTGATGTTCCTATGGGCTGTGAAGGCCCATGTAAGGTTCAGTCTTATGAACAAAGGGATGATGTGAAGCATACTGGTACTGTCCGTTGTGTTAGTGATGTTACTCGTGGAACTGGTGACACTCATCGAGTTGGCAAGAGATTTTGTATTAAATCCATTTACATTTTGGGTAAGATATGGATGGATGAGAACATTAAGAAGCAGAATCACACTAATCAGGTTATTTTCTTTTTAGTCCGTGATAGAAGGCCCAATGGAGCAAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTTGATAATGAGCCTAGTACTGCGACTGTGAAGAACTATCTCCGTGATAGATACCAGGTTGTGAGGAGATTCTATGCAACCGTTGTTGGTGGACCTTCTGGCGTTAGAGAGCAGGCTTTGATCAAGAGATTTGTTCATGTTACTAATCATGTAGTTTATAATAATCAAGTAGAGGCTAAGTATGAGAATCATACTGAGAATGCCTTGTTGTTGTATATGGCGTGTACTCATGCCTCTAATCCAGTGTATGCTACTCTGAAAATACGCATCTATTTTTATGATGCAGTCACGAATTAATAAATATTGAATTTTATTTCATGGTTCTCCTTAACTTGGAGTGTGTTTACAATTACATTGTACAGTACATGATCCACTGCTCTGATGACATTGTTAATTGAAATAACGCCTAAGCTATCTAAATATTTAAGAACTTGAAACTTAAAGACTCTTAAGAAATGACCAATCCGAGGCTGTAAGGTCGTCCAGACCTGGAAATTCAGAAAACATTTGTGAATCCCCAACTCCTTCCTCATGTTGTGGTTGAACCTTATCTGGACTGATATGATGTCGTGGTTGTTGTTGAATGGTCTCTTGTCGTGGTGGGTTATTGTGAAATATAGGGGGTTGTTTATCTGCCAGATAAAAACGCCATTCCTTGCTTGAGGTGCAGTGATGAGTTCCCCTGTGCGTAAATCCATGGTTGATGCAGTCTATGTGTAGGTAGTATGAACAGCCGCAGTGTAGGTCGATACGTTTACGACGGATGGCCTTCTTCTTGGCTATTCTGTGTTGGACCTTGATGGGCACTTGAGTAGAGTGGCTCGTTGAGGGTGACGAAGGTTGCATTCTTGATAGCCCAGGCTTTGAGTGGTGTGTTTTTTTCCTCGTCGAGATATTCTTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAATTGGTTTGCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTCAGATAATGCGGGTCTACGTCATCAATGACGTTGTACCAGGCATCGTTGCTGTAAACCTTCGGACTCAGATCTAAATGGCCACACAAATAATTGTGAGGTCCTAATGACCTCGCCCACATGGTCTTGCCGGTTCGACTATCACCCTCTACTACAATACTAATAGGCCTCCACGGCCGCGCAGCGGGTGTCTTGATATTTTCTGATACCCATTCCTCAAGTTCTTCTGGAACTTGATTAAAAGACGAACATAAAAATGGAGATACATAAGGAGTCGGGGGCTCCTGGAAAATTCTATCTAGATTGCTATTTAAATTATGAAATTGTAAAACAAAATCCTTTGGGGCTAATTCCTTTAATACGTTGAGAGCCTCCGATTTACTTCCTGAGTTAAGAGCTCTGGCGTAAGCGTCATTTGCTGATTGTTGCCCTCCCCTTGCGGATCTTCCATCGATCTGAAACTCGCCCCATTCGATGGTGTCTCCGTCCTTGTCCAGATATGACTTGACATCGGAACTGGACTTAGCGCCCTGTATGTTGGGGTGGAAACAGGTGCTACTGCTTGGGTGTATGTAATCGAACAGCCGATTATTCGTAATCGTAATCTTCCCCTCGAATTGGATGAGGGCGTGCAAATGAGGTTGCCCATCTTGGTGTAATTCTTTGCAGATCTTGATGAATTTTGGGTTTGATGCTAAGGATAACCCTTTTATGAATTGTAACAACAATTCTTTGGGCAATTGGCATTTGGGGTAAGTGAGAAATATGTTTTTCGCTTGAATTTTAAATCTAGGGTTCCTCATTTTGACCTGGTCAATTGGAGACACCCCGCTTCATGTCTCTTGTGTATTGGAGACAATATATAGTGTCTCTAAATGGCATAATTGTAAATATGAAATTATCAACTTTTACTTTAATTCAAATTCAAAAGCGGCCATCCGCATTAATATT
Gene Information
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NCBI Accession
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YP_010087818.1
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Location
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74-484 |
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Gene Name
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AV2 |
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Protein Name
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precoat protein |
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Coding Region
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ATGCCTATATACGTCATTTGTCTGTATATACGTGGCGCCCAAGTATTGGTGTATTGTAAGATGTGGGATCCTCTCTTGAATGATTTCCCTGAAACGGCTCATGCCTTCCGTTCTATGCTTGCCGTGAAATACTTGCAGTGTATAGAACAAACGTATGAACCTGGTACATTGGGTCACGATTTAATTCGAGATCTTATTTTGGTTATTCGAGCTAAAGATTATGTCGAAGCGACCAGGAGATATAATCATTTCCACGCCCGTATCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCCTATACCAACCGTGTTGCTGTCCCCACTGCCCGAGGCATAGGCAGACAGCGTCTATGGAAGTATCGGCCCATGTATCGAAAGCCCAGGATGTACAAAATGTACAAAAGTCGTGA |
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Protein Sequence
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MPIYVICLYIRGAQVLVYCKMWDPLLNDFPETAHAFRSMLAVKYLQCIEQTYEPGTLGHDLIRDLILVIRAKDYVEATRRYNHFHARIEGASKAELRQPLYQPCCCPHCPRHRQTASMEVSAHVSKAQDVQNVQKS |
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NCBI Accession
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YP_010087819.1
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Location
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294-1070 |
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Gene Name
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AV1 |
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Protein Name
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coat protein |
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Coding Region
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ATGTCGAAGCGACCAGGAGATATAATCATTTCCACGCCCGTATCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCCTATACCAACCGTGTTGCTGTCCCCACTGCCCGAGGCATAGGCAGACAGCGTCTATGGAAGTATCGGCCCATGTATCGAAAGCCCAGGATGTACAAAATGTACAAAAGTCGTGATGTTCCTATGGGCTGTGAAGGCCCATGTAAGGTTCAGTCTTATGAACAAAGGGATGATGTGAAGCATACTGGTACTGTCCGTTGTGTTAGTGATGTTACTCGTGGAACTGGTGACACTCATCGAGTTGGCAAGAGATTTTGTATTAAATCCATTTACATTTTGGGTAAGATATGGATGGATGAGAACATTAAGAAGCAGAATCACACTAATCAGGTTATTTTCTTTTTAGTCCGTGATAGAAGGCCCAATGGAGCAAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTTGATAATGAGCCTAGTACTGCGACTGTGAAGAACTATCTCCGTGATAGATACCAGGTTGTGAGGAGATTCTATGCAACCGTTGTTGGTGGACCTTCTGGCGTTAGAGAGCAGGCTTTGATCAAGAGATTTGTTCATGTTACTAATCATGTAGTTTATAATAATCAAGTAGAGGCTAAGTATGAGAATCATACTGAGAATGCCTTGTTGTTGTATATGGCGTGTACTCATGCCTCTAATCCAGTGTATGCTACTCTGAAAATACGCATCTATTTTTATGATGCAGTCACGAATTAA |
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Protein Sequence
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MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVAVPTARGIGRQRLWKYRPMYRKPRMYKMYKSRDVPMGCEGPCKVQSYEQRDDVKHTGTVRCVSDVTRGTGDTHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVIFFLVRDRRPNGASPMDFGQVFNMFDNEPSTATVKNYLRDRYQVVRRFYATVVGGPSGVREQALIKRFVHVTNHVVYNNQVEAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN |
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NCBI Accession
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YP_010087820.1
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Location
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1067-1471 |
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Gene Name
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AC3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTTACGCACAGGGGAACTCATCACTGCACCTCAAGCAAGGAATGGCGTTTTTATCTGGCAGATAAACAACCCCCTATATTTCACAATAACCCACCACGACAAGAGACCATTCAACAACAACCACGACATCATATCAGTCCAGATAAGGTTCAACCACAACATGAGGAAGGAGTTGGGGATTCACAAATGTTTTCTGAATTTCCAGGTCTGGACGACCTTACAGCCTCGGATTGGTCATTTCTTAAGAGTCTTTAAGTTTCAAGTTCTTAAATATTTAGATAGCTTAGGCGTTATTTCAATTAACAATGTCATCAGAGCAGTGGATCATGTACTGTACAATGTAATTGTAAACACACTCCAAGTTAAGGAGAACCATGAAATAAAATTCAATATTTATTAA |
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Protein Sequence
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MDLRTGELITAPQARNGVFIWQINNPLYFTITHHDKRPFNNNHDIISVQIRFNHNMRKELGIHKCFLNFQVWTTLQPRIGHFLRVFKFQVLKYLDSLGVISINNVIRAVDHVLYNVIVNTLQVKENHEIKFNIY |
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NCBI Accession
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YP_010087821.1
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Location
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1212-1619 |
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Gene Name
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AC2 |
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Protein Name
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transactivator protein |
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Coding Region
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ATGCAACCTTCGTCACCCTCAACGAGCCACTCTACTCAAGTGCCCATCAAGGTCCAACACAGAATAGCCAAGAAGAAGGCCATCCGTCGTAAACGTATCGACCTACACTGCGGCTGTTCATACTACCTACACATAGACTGCATCAACCATGGATTTACGCACAGGGGAACTCATCACTGCACCTCAAGCAAGGAATGGCGTTTTTATCTGGCAGATAAACAACCCCCTATATTTCACAATAACCCACCACGACAAGAGACCATTCAACAACAACCACGACATCATATCAGTCCAGATAAGGTTCAACCACAACATGAGGAAGGAGTTGGGGATTCACAAATGTTTTCTGAATTTCCAGGTCTGGACGACCTTACAGCCTCGGATTGGTCATTTCTTAAGAGTCTTTAA |
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Protein Sequence
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MQPSSPSTSHSTQVPIKVQHRIAKKKAIRRKRIDLHCGCSYYLHIDCINHGFTHRGTHHCTSSKEWRFYLADKQPPIFHNNPPRQETIQQQPRHHISPDKVQPQHEEGVGDSQMFSEFPGLDDLTASDWSFLKSL |
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NCBI Accession
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YP_010087822.1
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Location
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1528-2604 |
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Gene Name
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AC1 |
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Protein Name
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replication associated protein |
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Coding Region
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ATGAGGAACCCTAGATTTAAAATTCAAGCGAAAAACATATTTCTCACTTACCCCAAATGCCAATTGCCCAAAGAATTGTTGTTACAATTCATAAAAGGGTTATCCTTAGCATCAAACCCAAAATTCATCAAGATCTGCAAAGAATTACACCAAGATGGGCAACCTCATTTGCACGCCCTCATCCAATTCGAGGGGAAGATTACGATTACGAATAATCGGCTGTTCGATTACATACACCCAAGCAGTAGCACCTGTTTCCACCCCAACATACAGGGCGCTAAGTCCAGTTCCGATGTCAAGTCATATCTGGACAAGGACGGAGACACCATCGAATGGGGCGAGTTTCAGATCGATGGAAGATCCGCAAGGGGAGGGCAACAATCAGCAAATGACGCTTACGCCAGAGCTCTTAACTCAGGAAGTAAATCGGAGGCTCTCAACGTATTAAAGGAATTAGCCCCAAAGGATTTTGTTTTACAATTTCATAATTTAAATAGCAATCTAGATAGAATTTTCCAGGAGCCCCCGACTCCTTATGTATCTCCATTTTTATGTTCGTCTTTTAATCAAGTTCCAGAAGAACTTGAGGAATGGGTATCAGAAAATATCAAGACACCCGCTGCGCGGCCGTGGAGGCCTATTAGTATTGTAGTAGAGGGTGATAGTCGAACCGGCAAGACCATGTGGGCGAGGTCATTAGGACCTCACAATTATTTGTGTGGCCATTTAGATCTGAGTCCGAAGGTTTACAGCAACGATGCCTGGTACAACGTCATTGATGACGTAGACCCGCATTATCTGAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGCAAACCAATTCAAATTAAAGGGGGCATTCCCACTATCTTCCTCTGCAATCCAGGACCAACATCATCATATAAAGAATATCTCGACGAGGAAAAAAACACACCACTCAAAGCCTGGGCTATCAAGAATGCAACCTTCGTCACCCTCAACGAGCCACTCTACTCAAGTGCCCATCAAGGTCCAACACAGAATAGCCAAGAAGAAGGCCATCCGTCGTAA |
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Protein Sequence
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MRNPRFKIQAKNIFLTYPKCQLPKELLLQFIKGLSLASNPKFIKICKELHQDGQPHLHALIQFEGKITITNNRLFDYIHPSSSTCFHPNIQGAKSSSDVKSYLDKDGDTIEWGEFQIDGRSARGGQQSANDAYARALNSGSKSEALNVLKELAPKDFVLQFHNLNSNLDRIFQEPPTPYVSPFLCSSFNQVPEELEEWVSENIKTPAARPWRPISIVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNTPLKAWAIKNATFVTLNEPLYSSAHQGPTQNSQEEGHPS |
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NCBI Accession
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YP_010087823.1
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Location
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2157-2450 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGGGCAACCTCATTTGCACGCCCTCATCCAATTCGAGGGGAAGATTACGATTACGAATAATCGGCTGTTCGATTACATACACCCAAGCAGTAGCACCTGTTTCCACCCCAACATACAGGGCGCTAAGTCCAGTTCCGATGTCAAGTCATATCTGGACAAGGACGGAGACACCATCGAATGGGGCGAGTTTCAGATCGATGGAAGATCCGCAAGGGGAGGGCAACAATCAGCAAATGACGCTTACGCCAGAGCTCTTAACTCAGGAAGTAAATCGGAGGCTCTCAACGTATTAA |
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Protein Sequence
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MGNLICTPSSNSRGRLRLRIIGCSITYTQAVAPVSTPTYRALSPVPMSSHIWTRTETPSNGASFRSMEDPQGEGNNQQMTLTPELLTQEVNRRLSTY |