Genus | Begomovirus |
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NCBI Assembly | GCF_000867165.1 |
Isolate | Puerto Rico |
Release date | 2015/2/13 |
Submitter | Brown,J.K., Idris,A.M., Torres-Jerez,I., Banks,G.K., Wyatt,S.D., Baumann,K., Bird,J. |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_579167.1 |
---|---|
Location | 142-888 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGGTTAAGAGGGACGCCCCATGGCGTTTAATGGCGGGGACCACTAAAGTTAGTCGCAACGCCAATTTCTCGCCACGTGGAGGTATGGGCCCTAAGGCCGCTGCTTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAATTTATCGCACTTTGAGAGGGCCTGATGTTCCTAAAGGTTGTGAAGGCCCATGTAAGGTACAGTCTTTCGAGCAGCGTCATGATATTTCTCATGTTGGTAAGGTAATCTGTATATCCGATGTAACTCGTGGTAACGGTATTACCCACCGTGTTGGCAAGCGTTTTTGTGTGAAGTCTGTGTATATTCTAGGTAAAATATGGATGGATGAGAACATAAAGCTGAAGAACCACACGAACAGCGTCATGTTTTGGTTGATTCGTGACAGGAGACCCTATGGTACCCCTATGGATTTTGGTCAGGTGTTTAACATGTATGACAATGAGCCGAGTACTGCTACCGTCAAGAACGATCTTCGCGATCGATTTCAAGTCATGCATAGGTTCTATGCCAAAGTAACTGGTGGTCAGTATGCCAGTAACGAGCAGGCATTGGTTCGGCGATTTTGGAAGGTTAACAACTACGTCGTGTATAACCATCAGGAAGCAGGAAAATACGAGAATCACACGGAGAATGCTCTGTTATTGTATATGGCATCTACTCATGCTTCTAATCCTGTGTATGCTACCTTGAAAATTCGTAGTTATTTTTATGACTCCATTTCGAATTAA |
Protein Sequence | MVKRDAPWRLMAGTTKVSRNANFSPRGGMGPKAAAWVNRPMYRKPRIYRTLRGPDVPKGCEGPCKVQSFEQRHDISHVGKVICISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLIRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAGKYENHTENALLLYMASTHASNPVYATLKIRSYFYDSISN |
NCBI Accession | YP_579168.1 |
---|---|
Location | 885-1283 |
Gene Name | AC3 |
Protein Name | AC3 |
Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCTCATCAAGCAATGAATGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAATCCAAGTGGAGGAGCCAATATACACCACAACCAGAATATACACCATCCAAATACGGTTCAACTACAACCTGAGGAAGGCGTTGAGTCTACACAAAGCATACCTGAACTTCCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAGATTTAAAGATTTAGTTTTAATGTATTTAGATCAATTAGGTGTTGTTTCGCTTAACAATGTCATTAGAGCTGTTCGTTTCGCAACGGATAAACCATATGTAAATTGTGTGCTCGAAAGACATTCAATAAAATTTAATCTTTATTAA |
Protein Sequence | MDSRTGEPITAHQAMNGVFIWEVPNPLYFKIIQVEEPIYTTTRIYTIQIRFNYNLRKALSLHKAYLNFQIWTTSVQASGTTYLNRFKDLVLMYLDQLGVVSLNNVIRAVRFATDKPYVNCVLERHSIKFNLY |
NCBI Accession | YP_579169.1 |
---|---|
Location | 1030-1461 |
Gene Name | AC2 |
Protein Name | AC2 |
Coding Region | ATGAAAACGCATCTCTCAGAGCGTGGACGATCCACAATGCAAAATTCATCTTCCTCAACTCCCCCCTCTATCAAAGCACAGCACAGGAGAGCGAAGAGATCCAAATCTGTCATTAGACGGAGAAGGTTAGACCTGGACTGTGGCTGTTCAATTTACGTACACATCAACTGCAGAAACCATGGATTCACGCACAGGGGAACCCATCACTGCTCATCAAGCAATGAATGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAATCCAAGTGGAGGAGCCAATATACACCACAACCAGAATATACACCATCCAAATACGGTTCAACTACAACCTGAGGAAGGCGTTGAGTCTACACAAAGCATACCTGAACTTCCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAG |
Protein Sequence | MKTHLSERGRSTMQNSSSSTPPSIKAQHRRAKRSKSVIRRRRLDLDCGCSIYVHINCRNHGFTHRGTHHCSSSNEWRFYLGGSKSPLFQDNPSGGANIHHNQNIHHPNTVQLQPEEGVESTQSIPELPNLDDISSSFWDDIFK |
NCBI Accession | YP_579170.1 |
---|---|
Location | 1346-2422 |
Gene Name | AC1 |
Protein Name | AC1 |
Coding Region | ATGCCACGGAAGGGTTCATTCTCAATAAAAGCCAAAAACTATTTCCTCACATACCCTATATGTTCATTAGCCAAAGAAGAAGCACTGTCCCAAATCAAAGCTCTGCACACCCCTGTAAACAAAAAATTCATCAAGATCTGTAGAGAGCTTCACGATAATGGGGAACCTCATCTTCATGTGCTTATCCAGTTCGAAGGAAAATACAACTGCACGAATAACAGATTCTTCGATTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATCGACAAGGACGGAGATACAATTGAATGGGGACAATTCCAGATCGACGGAAGATCTGCTAGAGGAGGTCAGCAGTCTTCTAACGATACATACGCAAAGGCGTTAAACGCAGCTTCTGCAGAGGAAGCACTGCAAATAATAAAGGAGGAACAACCACAACACTTCTTTCTTCAACATCACAATCTCGTTGCGAACGCAACAAGAATATTTCAGAAGTCTCCAGAACCATGGGTTCCTCCGTTTCAACTCTCCTCCTTCACGAACGTTCCAGATGAGATGCAAGAATGGGCAGACAACTACTTTGGGAGGGGTGCCGCTGCGCGGGCAGATAGACCGATAAGTATCATCATCGAAGGAGATAGTCGAACTGGAAAAACAATGTGGGCCCGTTCATTAGGTAAACATAATTATCTTAGTGGACATCTTGACTTTAATGGCAGAGTCTATTCGAATGACGTCGAATATAACGTCATTGATGACATAAGCCCTAATTATTTGAAATTAAAGCATTGGAAAGAATTGATAGGGGCCCAAAAGGACTGGCAGTCCAACTGTAAATACGGGAAGCCAGTTCAAACTAAAGGAGGAATACCCTCAATCGTGCTGTGCAATCCAGGAGAGGGGGCTAGCTATAAAGACTTCCTCGATAAAGATGAAAACGCATCTCTCAGAGCGTGGACGATCCACAATGCAAAATTCATCTTCCTCAACTCCCCCCTCTATCAAAGCACAGCACAGGAGAGCGAAGAGATCCAAATCTGTCATTAG |
Protein Sequence | MPRKGSFSIKAKNYFLTYPICSLAKEEALSQIKALHTPVNKKFIKICRELHDNGEPHLHVLIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGQFQIDGRSARGGQQSSNDTYAKALNAASAEEALQIIKEEQPQHFFLQHHNLVANATRIFQKSPEPWVPPFQLSSFTNVPDEMQEWADNYFGRGAAARADRPISIIIEGDSRTGKTMWARSLGKHNYLSGHLDFNGRVYSNDVEYNVIDDISPNYLKLKHWKELIGAQKDWQSNCKYGKPVQTKGGIPSIVLCNPGEGASYKDFLDKDENASLRAWTIHNAKFIFLNSPLYQSTAQESEEIQICH |
NCBI Accession | YP_579171.1 |
---|---|
Location | 339-1109 |
Protein Name | BV1 protein |
Coding Region | ATGTATTCTTTTAGATATAGACCGTATCATTTTAATTATCGGAAACGATTTTACACACGTACGCAAGTGTCTAAACGGGTAGCCCCGTTTAAACGAGCTGATGTGAAATGTCGAACGAGGCAGACGACTATCGTTCATGATGAGACTAAGATGTCTTCGCAGCGCATTCATGAGAACCAATTTGGTCCAGAGTTTGTGATGACACATAACTCCGCCATATCCACTTTCATTAATTATCCTACTTTGAGTAAGACCGAGCCTAACAGAAGCAGATCTTACATTAAGTTGAAACGCTTGCGGTTTAAGGGTACTGTTAAAATTGAGCGTGTGTATGCGGATATGAACATGGATGGTTTGAACCCTAAAGTTGAAGGGGTATTCACTCTTGCTGTTGTAGTTGACCGAAAACCTCATTTAAAGCCATCTGGATGTCTGCATACATTTGATGAGGTATTTGGTGCACGGATTCACAGTCATGGTACGTTAGCCATTACTCCGTCACTGACAGATCGTTACTACATTCGCCATGTGTTTAAACGTGTAATGTCTGTTGAGAAGGATACTGCCATGGTTGATGTGGAAGGATCGATGTCTCTCTCTAATAAGCGTTTTAATTGTTGGGCTACGTTTAAGGATCTTGATCATGAATCTTGTAAGGGTGTTTATGACAATATTAGCAAAAACGCCTTGTTAATTTATTATTGTTGGATGTCTGATGTACCATCTAAGGCATCGTCATTTGTATCATTTGATTTGGATTATGTTGGCTAA |
Protein Sequence | MYSFRYRPYHFNYRKRFYTRTQVSKRVAPFKRADVKCRTRQTTIVHDETKMSSQRIHENQFGPEFVMTHNSAISTFINYPTLSKTEPNRSRSYIKLKRLRFKGTVKIERVYADMNMDGLNPKVEGVFTLAVVVDRKPHLKPSGCLHTFDEVFGARIHSHGTLAITPSLTDRYYIRHVFKRVMSVEKDTAMVDVEGSMSLSNKRFNCWATFKDLDHESCKGVYDNISKNALLIYYCWMSDVPSKASSFVSFDLDYVG |
NCBI Accession | YP_579172.1 |
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Location | 1165-2046 |
Protein Name | BC1 protein |
Coding Region | ATGGATGCTCAATTGGTTAATCCTCCAAGTGCCTTTAATTATATAGAATCTCACAGAGACGAATATCAGCTATCTCATGATTTAACTGAGATAATACTGCACTTTCCGTCAGCAGCGGCTCAATTATCAGCAAGATTAAGTCGCAGTTGTATGAAAATAGATCACTGCGTCATAGAATACAGGCAACAGGTACCGATAAACGCAATAGGTACTGTAATTGTGGAGATCCACGACAGAAGGATGACGGATAACGAATCATTACAAGCATCATGGACGTTCCCAATCAGATGCAACATAGACCTTCATTACTTTTCCTCGTCTTTCTTCTCACTGAAAGACCCAATCCCGTGGAAACTATACTACAGAGTCTGTGATTCAAACATACACCAACGAACACATTTCGCCAAGTTCAAAGGGAAACTAAAACTGTCGACAGCGAAACATTCTGTAGATATCCCATTCAGAGCTCCGGCGGTGAAGATCCTGTCTAAGCAATTTTCCGAGAAGGATGTCGATTTCTCACATGTGGGCTACGGGAGATGGGAAAGAAAAATGATCCGGTCAATCTCAATGGCAAGAATTGGGCTACCAAGCCCAATAGAATTATTACCAGGCGAGTCATGGGCCTCAAGAAGCACAATCGGTATAGGCCAAACGGACACAGATTCGGAACTGGAAAATGCAATACACCCATACAGGCAACTCAATCGTCTGGGAACCAGTGCGTTGGATCCAGGTGATTCTGCTTCAATCGTAGGGGCTTCAAGGGCCCAATCCAATATAACAATGTCAATGGCCCAATTAAATGATCTTGTACGATCAACGGTCCATGAGTGTATTAATAGTAATTGTACACCGGCTCAGCCGAAATCGTTAAAATAG |
Protein Sequence | MDAQLVNPPSAFNYIESHRDEYQLSHDLTEIILHFPSAAAQLSARLSRSCMKIDHCVIEYRQQVPINAIGTVIVEIHDRRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVCDSNIHQRTHFAKFKGKLKLSTAKHSVDIPFRAPAVKILSKQFSEKDVDFSHVGYGRWERKMIRSISMARIGLPSPIELLPGESWASRSTIGIGQTDTDSELENAIHPYRQLNRLGTSALDPGDSASIVGASRAQSNITMSMAQLNDLVRSTVHECINSNCTPAQPKSLK |
1 |
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2 |
Next-Generation Sequencing and Genome Editing in Plant Virology. Hadidi A, et al. Front Microbiol. 2016 Aug 26;7:1325. doi: 10.3389/fmicb.2016.01325. eCollection 2016. PMID: 27617007 |
3 |
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4 |
Cardin L, et al. Plant Dis. 2009 Feb;93(2):201. doi: 10.1094/PDIS-93-2-0201B. PMID: 30764126 |
5 |
Tropical Whitefly IPM Project. Morales FJ. Adv Virus Res. 2007;69:249-311. doi: 10.1016/S0065-3527(06)69006-4. PMID: 17222696 |
6 |
Fiallo-Olivé E, et al. Arch Virol. 2014 Jul;159(7):1857-60. doi: 10.1007/s00705-014-1996-4. Epub 2014 Jan 25. PMID: 24463954 |
7 |
Whitefly transmission of sweet potato viruses. Valverde RA, et al. Virus Res. 2004 Mar;100(1):123-8. doi: 10.1016/j.virusres.2003.12.020. PMID: 15036843 |
8 |
Targeting of SPCSV-RNase3 via CRISPR-Cas13 confers resistance against sweet potato virus disease. Yu Y, et al. Mol Plant Pathol. 2022 Jan;23(1):104-117. doi: 10.1111/mpp.13146. Epub 2021 Oct 11. PMID: 34633749 |
9 |
Varanda CM, et al. Acta Virol. 2015 Jun;59(2):185-8. doi: 10.4149/av_2015_02_185. PMID: 26104336 |
10 |
David M, et al. Plant Dis. 2023 Jul;107(7):2061-2069. doi: 10.1094/PDIS-08-21-1650-RE. Epub 2023 Jul 6. PMID: 36510429 |