Malvastrum yellow vein Cambodia virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000969115.1 |
| Isolate |
Cambodia |
| Release date |
2015/4/6 |
| Submitter |
Tang,Y.F., He,Z.F. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTATTGTGGGTCCCCGCACTATTTTTTGTCTTCCAATAAAAACGCTCCCTCAAAGCTAGTTTAAAAAAAACCCGCTATAAATACTTGGTGGATAAGTAATAAGGATTTAAAATGTGGGATCCACTGTTGAACGAGTTTCCTGAAACTGTTCATGGTCTCCGGTGTATGCTTGCCGTAAAATATTGTCAGTTAATCGAACAGACATATTCTCCGGACACAGTGGGTTACGATCTTATACGAGATTTAATTTCAGTAATTCGTGCTCGCAATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGACGCCGTCTGAACTTCGACACCCCCGTGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAGAAAAAGGACATGGATCAACAGGCCCATGTATCGCAAGCCCAGACTCTTCAGAATGTACAGAAGCCCTGATGTCCCTAAAGGTTGTGAAGGCCCATGTAAAGTCCAATCTTATGAACAAAGGCACGACATATCTCATGTTGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGTAGTGGGCTTACTCATCGTGTTGGCAAGAGATTTTGTGTGAAGTCTGTTTATGTATTGGGTAAAATATGGATGGATGAAAATATAAAAACCAAGAACCATACGAACACTGTCATGTTTTATCTTGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGATTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACGGCTACTATAAAGAACGATCTTCGAGATCGTTATCAAGTTTTAAGGAAGTTCACTTCAACAGTCACAGGTGGTCAATATGCTTGTAAGGAACAAGCGTTGGTTAGGAAATTTATGAAAGTTAATAACCATGTAGTTTATAATCATCAAGAAGCTGCTAAGTATGACAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTTTATGATTCTGTTCAAAATTAATAAAGATTGAATTTTATTATATTATAATGTGTTACATATTCTGTGTGTTCCAATACATCCCATAATACATGATTACATGCTCTAATTACATTGTTAATACTAATTACACCCAATCTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAGGTCTGAGGATGTAAACGAGTCCAGATTCGGAAGATTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGGACCTGGACTTCTATGATGTCGTGGTTCATCAGAAATGGCCTCTCGTGGTGCTGGGTCACTTTGAAATATAGGGGATTGTTGATTGTCCAGATATATACGCCATTCTCTGCTTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATATGATGCGCAATTAATTCCAATATAATATGAGCATCCACAAGGAAGATCAATCCGACGTCTCCGAATTGGCCTCTTCTTGGCTATTTTGTGATGGACTTTGACTGGTACCTGAGTACAATGGCTCTTTGAGGGTGAAAAATTCTGCATTCTTTAATGCCCAGTCTTTTAGTGATGAATTCTTGTCCTCGTCCAAGTACTCTTTATATGATGACGTTGGTCCTGGATTGCATAAGAAGATTGTCGGGATACCGCCTTTAATTTGAATTGGTTTCCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGTTTCAGATAGTGGGGGTCGACGTCATCTATGACGTTATACCATGCGTCGTTGCTGTAGATCTTTGGGCTTAGATCTAGATGTCCGCACAAATAATTATGTGGGCCTAATGATCGAGCCCACATAGTTTTCCCTGTTCTACTCGCACCCTCTATCACTATACTCACGGGTCTCCAGGGCCGCGCAGCGGCATCCCTGACGTTTTCCGCTGCCCAGCATTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAAAGGAAAGGAGAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAATACATAATCTTTGGGTGCTAGTTCTTTGATTACATTAAGAGCCTCCGACTTACTTCCACTGTTAAGTGCTGCTGCGTAAGCGTCGTTGGCTGATTGTTGACCCCCTCTTGCTGATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGAGTGTCTCCGTCCTTGTTGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAACTGTATAAGCACGTGGAGATGAGGGTTCCCATTTTGATGAAGCTCTCGACAGATTTTGATATATTTTTTATTTGTGGGGGTATTGAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTTGAAAGAGAGCATTCTGGATAAGTGAGGAAATAATTTTTGGCTTTTATAGAAAAACGACCTGTTCTAGGCATTGTGAATTGGGGGGCACTAAAAGTCCTATGCAATCGGGGGAACTAGGGGGCAATATATAGTGCCCCCCAAATGGCATTTACGTAAATACCTAAAGAAATTCAAAATTCATTCGCGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009129284.1
|
|
Location
|
133-483 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCACTGTTGAACGAGTTTCCTGAAACTGTTCATGGTCTCCGGTGTATGCTTGCCGTAAAATATTGTCAGTTAATCGAACAGACATATTCTCCGGACACAGTGGGTTACGATCTTATACGAGATTTAATTTCAGTAATTCGTGCTCGCAATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGACGCCGTCTGAACTTCGACACCCCCGTGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAGAAAAAGGACATGGATCAACAGGCCCATGTATCGCAAGCCCAGACTCTTCAGAATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGLRCMLAVKYCQLIEQTYSPDTVGYDLIRDLISVIRARNYVEATRRYSHFHSRLEGTTPSELRHPRDEPCCCPHCPRHQQKKDMDQQAHVSQAQTLQNVQKP |
|
NCBI Accession
|
YP_009129285.1
|
|
Location
|
293-1066 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGACGCCGTCTGAACTTCGACACCCCCGTGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAGAAAAAGGACATGGATCAACAGGCCCATGTATCGCAAGCCCAGACTCTTCAGAATGTACAGAAGCCCTGATGTCCCTAAAGGTTGTGAAGGCCCATGTAAAGTCCAATCTTATGAACAAAGGCACGACATATCTCATGTTGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGTAGTGGGCTTACTCATCGTGTTGGCAAGAGATTTTGTGTGAAGTCTGTTTATGTATTGGGTAAAATATGGATGGATGAAAATATAAAAACCAAGAACCATACGAACACTGTCATGTTTTATCTTGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGATTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACGGCTACTATAAAGAACGATCTTCGAGATCGTTATCAAGTTTTAAGGAAGTTCACTTCAACAGTCACAGGTGGTCAATATGCTTGTAAGGAACAAGCGTTGGTTAGGAAATTTATGAAAGTTAATAACCATGTAGTTTATAATCATCAAGAAGCTGCTAAGTATGACAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTTTATGATTCTGTTCAAAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNRKRTWINRPMYRKPRLFRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYACKEQALVRKFMKVNNHVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
YP_009129286.1
|
|
Location
|
1063-1467 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGTATATATCTGGACAATCAACAATCCCCTATATTTCAAAGTGACCCAGCACCACGAGAGGCCATTTCTGATGAACCACGACATCATAGAAGTCCAGGTCCAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAATCTTCCGAATCTGGACTCGTTTACATCCTCAGACCTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAGATTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTAATCATGTATTATGGGATGTATTGGAACACACAGAATATGTAACACATTATAATATAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDSRTGELITATQAENGVYIWTINNPLYFKVTQHHERPFLMNHDIIEVQVQFNHNLRKALGIHKCFLIFRIWTRLHPQTWRFLRVFRVQCMKYLDRLGVISINNVIRACNHVLWDVLEHTEYVTHYNIIKFNLY |
|
NCBI Accession
|
YP_009129287.1
|
|
Location
|
1208-1615 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCAGAATTTTTCACCCTCAAAGAGCCATTGTACTCAGGTACCAGTCAAAGTCCATCACAAAATAGCCAAGAAGAGGCCAATTCGGAGACGTCGGATTGATCTTCCTTGTGGATGCTCATATTATATTGGAATTAATTGCGCATCATATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGTATATATCTGGACAATCAACAATCCCCTATATTTCAAAGTGACCCAGCACCACGAGAGGCCATTTCTGATGAACCACGACATCATAGAAGTCCAGGTCCAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAATCTTCCGAATCTGGACTCGTTTACATCCTCAGACCTGGCGTTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MQNFSPSKSHCTQVPVKVHHKIAKKRPIRRRRIDLPCGCSYYIGINCASYGFTHRGTHHCNSSREWRIYLDNQQSPIFQSDPAPREAISDEPRHHRSPGPVQSQPEESVGDTQMFSNLPNLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_009129288.1
|
|
Location
|
1515-2603 |
|
Gene Name
|
AC1 |
|
Protein Name
|
rep protein |
|
Coding Region
|
ATGCCTAGAACAGGTCGTTTTTCTATAAAAGCCAAAAATTATTTCCTCACTTATCCAGAATGCTCTCTTTCAAAAGAAGAAGCACTTTCCCAATTACAAAACCTCAATACCCCCACAAATAAAAAATATATCAAAATCTGTCGAGAGCTTCATCAAAATGGGAACCCTCATCTCCACGTGCTTATACAGTTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAAACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCAACAAGGACGGAGACACTCTCGAATGGGGAGAATTCCAGATCGACGGACGATCAGCAAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCAGCAGCACTTAACAGTGGAAGTAAGTCGGAGGCTCTTAATGTAATCAAAGAACTAGCACCCAAAGATTATGTATTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTCTCCTTTCCTTTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAATGCTGGGCAGCGGAAAACGTCAGGGATGCCGCTGCGCGGCCCTGGAGACCCGTGAGTATAGTGATAGAGGGTGCGAGTAGAACAGGGAAAACTATGTGGGCTCGATCATTAGGCCCACATAATTATTTGTGCGGACATCTAGATCTAAGCCCAAAGATCTACAGCAACGACGCATGGTATAACGTCATAGATGACGTCGACCCCCACTATCTGAAACATTTCAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAATACGGGAAACCAATTCAAATTAAAGGCGGTATCCCGACAATCTTCTTATGCAATCCAGGACCAACGTCATCATATAAAGAGTACTTGGACGAGGACAAGAATTCATCACTAAAAGACTGGGCATTAAAGAATGCAGAATTTTTCACCCTCAAAGAGCCATTGTACTCAGGTACCAGTCAAAGTCCATCACAAAATAGCCAAGAAGAGGCCAATTCGGAGACGTCGGATTGA |
|
Protein Sequence
|
MPRTGRFSIKAKNYFLTYPECSLSKEEALSQLQNLNTPTNKKYIKICRELHQNGNPHLHVLIQFEGKYNCTNNRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYINKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALNVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFVSPFLSSSFDQVPEELECWAAENVRDAAARPWRPVSIVIEGASRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSSLKDWALKNAEFFTLKEPLYSGTSQSPSQNSQEEANSETSD |
|
NCBI Accession
|
YP_009129289.1
|
|
Location
|
2156-2446 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGAACCCTCATCTCCACGTGCTTATACAGTTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAAACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCAACAAGGACGGAGACACTCTCGAATGGGGAGAATTCCAGATCGACGGACGATCAGCAAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCAGCAGCACTTAACAGTGGAAGTAAGTCGGAGGCTCTTAATGTAA |
|
Protein Sequence
|
MGTLISTCLYSSKGNTTARITDSSTWYPQTGQHISIRTFRELNPAPTSSPTSTRTETLSNGENSRSTDDQQEGVNNQPTTLTQQHLTVEVSRRLLM |