Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000896915.1 |
Isolate | Brazil |
Release date | 2015/2/22 |
Submitter | Silva,S.J.C., Castillo-Urquiza,G.P., Hora,B.T. Jr., Assuncao,I.P., Lima,G.S.A., Pio-Ribeiro,G., Mizubuti,E.S.G., Zerbini,F.M. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_005352900.1 |
---|---|
Location | 238-993 |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGCGATGCCCCATGGCGCCACATGGCAGGTACCTCAAAGGTTAGCCGTTCTGGTAATTTTTCGCCTCGTGGTGGTAATGGGCCTAAGTTTGATAAGGGTTCTGCTTGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATATATCGGATGTGGAGAACCCCCGATGTTCCCAGGGGGTGTGAAGGCCCGTGTAAGGTTCAATCCTTTGAACAGCGTCATGATGTCTCTCATATTGGCAAAGTTTTGTGTATATCCGACGTGACAAGGGGTAATGGTATTACCCATCGTGTTGGGAAGCGTTTTTGTGTTAAGTCTGTGTATATTTTAGGGAAGATTTGGATGGATGATAATATTAAGTTGAAGAACCATACGAATAGCGTTATGTTCTGGTTAGTTAGGGATAGGAGACCCTATGGTACCCCTATGGATTTTGGACAAGTTTTTAATTTGTTTGATAATGAACCCAGTACTGCGACCGTGAAGAACGATCTTCGTGATCGTTTTCAAGTTATGCATCGGTTCTCGACTAAGGTGACAGGTGGACAATATGCTAGTAATGAGCAGGCCCTGGTGCGGCGTTTTTGGAAGGTCAACAACCATGTGACATACAACCATCAAGAAGCCGCAAAGTACGAGAATCATACGGAGAACGCCTTACTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTCTCAAGATTCGGATCTATTTTTATGATTCGATATCCAATTAA |
Protein Sequence | MPKRDAPWRHMAGTSKVSRSGNFSPRGGNGPKFDKGSAWVNRPMYRKPRIYRMWRTPDVPRGCEGPCKVQSFEQRHDVSHIGKVLCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKNDLRDRFQVMHRFSTKVTGGQYASNEQALVRRFWKVNNHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN |
NCBI Accession | YP_005352901.1 |
---|---|
Location | 990-1388 |
Protein Name | replication-enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATATCAAATCCCCTCTATTTCAAGACGTACAACGTAGAGGATCCCCCACACACAAGGACAAGAATATACCACGTCCAGATAAGGTTCAACCACAACCTCAGGAACAAACTGGATCTTCACAAGGCATTCCTGAACTTCCAAGTCTGGACGATATCACTTCGAGCTTCTGGGACGACATATTTACATAGATTTAAATATTTAGTCATGTTGTATTTAGATCGATTAGGTGTTATTTCCATTAACAATGTAATCAGAGCTGTTCGTTTTGCAACAGACAAAGCATATGTAAATTATGTACTTGAGAATCATGAAATAAAATTCAAAATTTATTAA |
Protein Sequence | MDSRTGELITARQAENGVYIWEISNPLYFKTYNVEDPPHTRTRIYHVQIRFNHNLRNKLDLHKAFLNFQVWTISLRASGTTYLHRFKYLVMLYLDRLGVISINNVIRAVRFATDKAYVNYVLENHEIKFKIY |
NCBI Accession | YP_005352902.1 |
---|---|
Location | 1135-1524 |
Protein Name | transactivating protein |
Coding Region | ATGCAAAATTCGTCTTCCTCAACTCCCCCCTCTATCAAAGTTCAACACAGAGCAGCGAAGAAGAGGGCCGTCAGGAGACGGCGAATTGACATAGAGTGCGGTTGTTCAATTTACGTCCACATAAACTGCGCAGGTCATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATATCAAATCCCCTCTATTTCAAGACGTACAACGTAGAGGATCCCCCACACACAAGGACAAGAATATACCACGTCCAGATAAGGTTCAACCACAACCTCAGGAACAAACTGGATCTTCACAAGGCATTCCTGAACTTCCAAGTCTGGACGATATCACTTCGAGCTTCTGGGACGACATATTTACATAG |
Protein Sequence | MQNSSSSTPPSIKVQHRAAKKRAVRRRRIDIECGCSIYVHINCAGHGFTHRGTHHCTSGREWRVYLGDIKSPLFQDVQRRGSPTHKDKNIPRPDKVQPQPQEQTGSSQGIPELPSLDDITSSFWDDIFT |
NCBI Accession | YP_005352903.1 |
---|---|
Location | 1436-2521 |
Protein Name | replication-associated protein |
Coding Region | ATGCCACCACCGAAGCGTTTTAAAATAAACGCCAAAAATTATTTCCTCACATATCCCCGATGCTCAATTGCGAAAGAGAGTGCAATTGAACAGCTTCAAAACCTAGACACACCAGTCAACAAGAAATATATCAGAATCTGCAGAGAACTTCACGAGAATGGGGAACCGCATCTGCATGCTCTCATTCAATTCGAAGGAAAGTTCCAGTGCACGAATTGCAGATTCTTCGACCTCAAACATCCAAACACCTCTTCCGTCTCCCATGCCAATATACAGAGTGCAAAATCATCCTCTGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACGTCGAATGGGGTCATTTTCAAGTCGACGGAAGATCTGCTAGAGGAGGTCAGCAGACAGTTAATGATGCAGCCTCCGAGGCGTTAAATGCTTCTTCAAAGGAAGAAGCCATGCAAATAATAAAAGAGAAACTGCCGGAGAAGTTTCTCTTCCAATATCACAACCTCTCTAGCAATCTAGATAGGATTTTCACAAGAGCTCCGGAGCCATGGTCTCCTCCGTTTCAACTCTCCTCATTCACTAACGTGCCCAAGGAGATGCAAGATTGGGCTGATAATTATTTCGGGAGAGGTGCCGCTGCGCGGCCGGAGAGACCTATTAGTATCATCGTCGAAGGTGATTCACGAACGGGGAAGACGATGTGGGCGCGTGCATTGGGGGTCCACAATTATCTGAGTGGACACCTCGATTTCAACTCGCGGGTCTATTCAAACCATGTGCAGTACAACATCATAGACGACATCGCGCCCACCTATCTAAAGCTAAAGCACTGGAAAGAATTGATTGGGGCTCAAAAGGACTGGCAATCAAATTGCAAATACGGCAAGCCTGTTCAAATTAAAGGTGGTATCCCATCAATCGTGCTTTGCAATCCTGGCGAAGGGTCCAGTTATAAAGATTTCCTCGACAAAGAGGAAAACACAGCATTACGAAACTGGACGATACACAATGCAAAATTCGTCTTCCTCAACTCCCCCCTCTATCAAAGTTCAACACAGAGCAGCGAAGAAGAGGGCCGTCAGGAGACGGCGAATTGA |
Protein Sequence | MPPPKRFKINAKNYFLTYPRCSIAKESAIEQLQNLDTPVNKKYIRICRELHENGEPHLHALIQFEGKFQCTNCRFFDLKHPNTSSVSHANIQSAKSSSDVKSYIEKDGDYVEWGHFQVDGRSARGGQQTVNDAASEALNASSKEEAMQIIKEKLPEKFLFQYHNLSSNLDRIFTRAPEPWSPPFQLSSFTNVPKEMQDWADNYFGRGAAARPERPISIIVEGDSRTGKTMWARALGVHNYLSGHLDFNSRVYSNHVQYNIIDDIAPTYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLDKEENTALRNWTIHNAKFVFLNSPLYQSSTQSSEEEGRQETAN |
NCBI Accession | YP_005352904.1 |
---|---|
Location | 2107-2364 |
Protein Name | AC4 protein |
Coding Region | ATGGGGAACCGCATCTGCATGCTCTCATTCAATTCGAAGGAAAGTTCCAGTGCACGAATTGCAGATTCTTCGACCTCAAACATCCAAACACCTCTTCCGTCTCCCATGCCAATATACAGAGTGCAAAATCATCCTCTGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACGTCGAATGGGGTCATTTTCAAGTCGACGGAAGATCTGCTAGAGGAGGTCAGCAGACAGTTAATGATGCAGCCTCCGAGGCGTTAA |
Protein Sequence | MGNRICMLSFNSKESSSARIADSSTSNIQTPLPSPMPIYRVQNHPLMSSPTSRRTVITSNGVIFKSTEDLLEEVSRQLMMQPPRR |
1 |
Macedo MA, et al. Arch Virol. 2018 Mar;163(3):737-743. doi: 10.1007/s00705-017-3662-0. Epub 2017 Dec 9. PMID: 29224131 |
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2 |
Collins A, et al. Virus Res. 2010 Jun;150(1-2):148-52. doi: 10.1016/j.virusres.2010.03.008. Epub 2010 Mar 25. PMID: 20347895 |
3 |
Nanopore sequencing of a novel bipartite New World begomovirus infecting cowpea. Naito FYB, et al. Arch Virol. 2019 Jul;164(7):1907-1910. doi: 10.1007/s00705-019-04254-5. Epub 2019 Apr 10. PMID: 30972591 |