Genus | Begomovirus |
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NCBI Assembly | GCF_000848005.1 |
Isolate | Jamaica |
Release date | 2015/2/12 |
Submitter | Amarakoon,I.I., Roye,M.E., Briddon,R.W., Bedford,I.D., Stanley,J. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_001876449.1 |
---|---|
Location | 208-960 |
Gene Name | CP |
Protein Name | coat protein |
Coding Region | ATGCCCAAGAGGGATGCCCCGTGGCGTTTGATGGCGGGAACCTCAAAGGTTTCCCGCACTGGCAATTATTCTCGAAATGGTGGTTTGGGCCAATCCTCCAACAAAAACGCTTGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATTTATCGGATGTACAGATCATCCGCTGTGCCCAAGGGATGTGAAGGACCTTGCAAGGTCCAATCCTATGAACAACGACATGATATATCTCATGTTGGTAAGGTGATATGTATTTCTGACATTACTCGTGGTAATGGTATTACTCATCGTGTAGGGAAGCGTTTTTGTGTGAAATCTGTGTATATTTTAGGGAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACAAACAGCGTTATTTTTTGGTTGGTGCGTGATCGTCGTCCCTATGGAACACCTATGGACTTTGGACAGGTGTTCAACATGTTTGATAATGAGCCCAGTACAGCTACTGTGAAGAACGATCTTCGTGATCGTTTCCGAGTGATACACAGATTTCATGCTAAGGTGACTGGTGGCCAATATGCAAGTAATGAACAGGCATTGGTAAGGCGATTTTGGAAGGTGAACAACCATGTCGTGTACAACCACCAGGAATCCGGAAAATACGAGAATCATACGGAGAACGCCTTATTATTGTATATGGCATGTACACATGCCTCAAACCCTGTATATGCAACATTGAAAATTCGGATCTATTTCTATGATTCGATAACAAATTAA |
Protein Sequence | MPKRDAPWRLMAGTSKVSRTGNYSRNGGLGQSSNKNAWVNRPMYRKPRIYRMYRSSAVPKGCEGPCKVQSYEQRHDISHVGKVICISDITRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFRVIHRFHAKVTGGQYASNEQALVRRFWKVNNHVVYNHQESGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | YP_001876450.1 |
---|---|
Location | 957-1355 |
Gene Name | REn |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAGAACATCACTGCGCGTCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCCCTATTTCAAGATCATCATGGTGGAGGATCCACCATTCACTCGAACAAGGATCTACCACATACAAGTCAGAGCCAACCACAACGTGCGGAAAGTGTTGGGTCTCCACAAAGCCTTCTTCAACTTCCAAGTCTGGACGACATTAACGACAGCTTCTGGGACGACATATTTAAATAGATTTAAATATCTTGTTCATATGTATCCTGATCAAATAGGGCTTGTCGGAATAAACAATGTAATTAGAGCTGTTCGTTTTGCCACGGACAAATCATATGTAAATTATGTGCTCGAAAGTCATGAAATAAAATTCAAATTTTATTAA |
Protein Sequence | MDSRTGENITARQAENSVFIWEVPNPPYFKIIMVEDPPFTRTRIYHIQVRANHNVRKVLGLHKAFFNFQVWTTLTTASGTTYLNRFKYLVHMYPDQIGLVGINNVIRAVRFATDKSYVNYVLESHEIKFKFY |
NCBI Accession | YP_001876451.1 |
---|---|
Location | 1102-1620 |
Gene Name | TrAP |
Protein Name | transcription activator protein |
Coding Region | ATGGAAAGCCGGTTCAAATTAAAGGAGGTATCCCTTCAATCGTGCTGTGCAATCCTGGTGAGGGTGCCAGTTATAAAGACTTCCTCGGTAAAGAAGAAAACCGAGCTTTACACAACTGGACCATTCATAATGCGCTATTCATCACCTTCACAGCCCCCCTCTATCAAAGCACAGCATCGCCTTGCCAAACGTAGGGCCATCCGTCGACGACGCTTAGACTTGAACTGCGGCTGTTCCATATTTCTCCATATCAATTGCCACGACCATGGATTCACGCACAGGGGAGAACATCACTGCGCGTCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCCCTATTTCAAGATCATCATGGTGGAGGATCCACCATTCACTCGAACAAGGATCTACCACATACAAGTCAGAGCCAACCACAACGTGCGGAAAGTGTTGGGTCTCCACAAAGCCTTCTTCAACTTCCAAGTCTGGACGACATTAACGACAGCTTCTGGGACGACATATTTAAATAG |
Protein Sequence | MESRFKLKEVSLQSCCAILVRVPVIKTSSVKKKTELYTTGPFIMRYSSPSQPPSIKAQHRLAKRRAIRRRRLDLNCGCSIFLHINCHDHGFTHRGEHHCASGREFRFYLGGSKSPLFQDHHGGGSTIHSNKDLPHTSQSQPQRAESVGSPQSLLQLPSLDDINDSFWDDIFK |
NCBI Accession | YP_001876452.1 |
---|---|
Location | 1427-2488 |
Gene Name | Rep |
Protein Name | replication-associated protein |
Coding Region | ATGCCACCACCAAAGAGATTTAGAGTGAGCGCAAAAAACTATTTCCTCACATATCCTCAGTGTTCTCTTTCAAAAGAAGAGGCTCTTTCCCAATTACAAAATATTTTCACTGCCACCAACAAGAAGTTCATCAAGATATGTGAGGAATTACACGAGGATGGGCAGCCTCATCTCCATGTGCTTATCCAGTTCGAAGGAAAATTCGTCCGCACGAATAACAGATTATTCGACCTGGTCTCCCCATCCCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTATCTCGACAAGGATGGAGTCACAGTCGAATGGGGAGAATTCCAGGTCGACGGTCGAAGTGCTAGAGGAGGCTGCCAGAGTGCTAACGACTCATATGCCAAGGCATTGAATGCCTCATCAGTCGAACAGGCACTTCAAATATTAAAGGAGGAGCAGCCCAAGGATTATCTTCTCCAACATCATAACATCCGTTCTAACCTAGAACGGATCTTTACCAAGGTTCCGGAACCATGGGTTCCTCCATTTCACCTCTCCTCCTTTACTCACGTTCCGGCTGAGATGCAAGCGTGGGTCGATGGTTATTTCGGAAGGGGTGCCGCTGCGCGGCCGGAGAGATATATGAGTATCATCGTCGAGGGTGACTCAAGAACAGGCAAAACAATGTGGGCTCGTTCATTGGGACCACACAATTATCTCATGGGTCACCTCGACTTCAATTCGCGTGTCTATTCCAATGCCGCTGAGTACAACGTCATTGATGACATAAGCCCCAATTATTTGAAATTAAAGCATTGGAAAGAGTTAATTGGGGCTCAAAGGGACTGGCAGTCAAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGAGGTATCCCTTCAATCGTGCTGTGCAATCCTGGTGAGGGTGCCAGTTATAAAGACTTCCTCGGTAAAGAAGAAAACCGAGCTTTACACAACTGGACCATTCATAATGCGCTATTCATCACCTTCACAGCCCCCCTCTATCAAAGCACAGCATCGCCTTGCCAAACGTAG |
Protein Sequence | MPPPKRFRVSAKNYFLTYPQCSLSKEEALSQLQNIFTATNKKFIKICEELHEDGQPHLHVLIQFEGKFVRTNNRLFDLVSPSRSAHFHPNIQGAKSSSDVKSYLDKDGVTVEWGEFQVDGRSARGGCQSANDSYAKALNASSVEQALQILKEEQPKDYLLQHHNIRSNLERIFTKVPEPWVPPFHLSSFTHVPAEMQAWVDGYFGRGAAARPERYMSIIVEGDSRTGKTMWARSLGPHNYLMGHLDFNSRVYSNAAEYNVIDDISPNYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLGKEENRALHNWTIHNALFITFTAPLYQSTASPCQT |
NCBI Accession | YP_001876453.1 |
---|---|
Location | 2074-2331 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGGGCAGCCTCATCTCCATGTGCTTATCCAGTTCGAAGGAAAATTCGTCCGCACGAATAACAGATTATTCGACCTGGTCTCCCCATCCCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTATCTCGACAAGGATGGAGTCACAGTCGAATGGGGAGAATTCCAGGTCGACGGTCGAAGTGCTAGAGGAGGCTGCCAGAGTGCTAACGACTCATATGCCAAGGCATTGA |
Protein Sequence | MGSLISMCLSSSKENSSARITDYSTWSPHPGQHISIRTFRELNRAPTSSPISTRMESQSNGENSRSTVEVLEEAARVLTTHMPRH |
NCBI Accession | YP_001876454.1 |
---|---|
Location | 361-1128 |
Gene Name | NSP |
Protein Name | nuclear shuttle protein |
Coding Region | ATGTCTTTTGTAAAATACAGGTATGGTGCATCATATACGACAAGACGTTTTTTACGTCAACAGGCTACTAAGAAAAGGAGTGCTGTTAAACGCAATGATTTTAAGCGTGGTTACAGACAAGTGAGCAAGTCTAATGAAGAGGCAAAGATGATTAGCCAATCATTGCATGAAAATCAGCTTGGTCCTGATTTTGTTATGACTCACAATAACGCTCTATCTACGTTCATTAATTTTCCATGTTTGGGTAAGACTTTACCCAACCGAAACAGGTCATATATTAAGTTGAAACGCTTGCGTTTCAAAGGTACGGTGAAGATAGAGCGTGTTCATGTGGATGTTAATATGGATGGTTTATCCCCTAAGATTGAAGGCGTATTTTCGCTTGTTATCGTCATCGACCGGAAACCACATCTTAACCCGAATGGCTGTCTACACTCATTTGATGAACTATTTGGAGCAAGGATACACAGCCATGGAAATCTTGCCATTACGTCGTCATTGAAAGATCGTTACTACATTCGTCATGTGTTCAAGAGTGTTATTTCTGTGATCAAAGACACTACAATGATCGACGTTGAGGGTTCCACTTTGTTGTCTAATAGGCGTTCGAACATGTGGTCGAGTTTTAAGGATCATGATCATGACTCTTGTAATGGTGTTTATGACAATATTAGCAAGAACGCCATATTAGTTTATTATTGTTGGATGTCCGACACCAACTCCAAGGCTTCCACTTTTGTATCGTTTGACCTTGACTATGTTGGATGA |
Protein Sequence | MSFVKYRYGASYTTRRFLRQQATKKRSAVKRNDFKRGYRQVSKSNEEAKMISQSLHENQLGPDFVMTHNNALSTFINFPCLGKTLPNRNRSYIKLKRLRFKGTVKIERVHVDVNMDGLSPKIEGVFSLVIVIDRKPHLNPNGCLHSFDELFGARIHSHGNLAITSSLKDRYYIRHVFKSVISVIKDTTMIDVEGSTLLSNRRSNMWSSFKDHDHDSCNGVYDNISKNAILVYYCWMSDTNSKASTFVSFDLDYVG |
NCBI Accession | YP_001876455.1 |
---|---|
Location | 1196-2077 |
Gene Name | MP |
Protein Name | movement protein |
Coding Region | ATGGATTCTCAGTTAGCTTGTCCACCGAGTGCCTTTAATTATATTGAGTCTCATAGGGATGAATATCAGCTGTCTCATGATCTAACTGAGATAGTCCTTCAATTTCCTTCCACCGCTTCACAATTAACAGCTAGACTCAGTCGTAGTTGTATGAAAATCGACCATTGCGTCATAGAATATAGGCAACAGGTGCCTATCAACGCCACTGGAGCAGTCATAGTGGAGATTCATGACAAGAGAATGACGGACAACGAGTCCTTACAAGCTTCATGGACTTTTCCCATCCGGTGCAACATCGATCTCCACTATTTTTCATCGTCTTTCTTCTCGTTAAAAGACCCAATACCATGGAAACTCTATTACAGAGTTTCCGATACGAATGTCCATCAGAGAACACATTTCGCCAAATTCAAGGGAAAACTGAAATTATCAACGGCCAAACATTCAGTTGATATCCCATTCAGGGCTCCAACAGTCAAGATCCTCTCAAAACAGTTTTCCAATAGAGATGTCGATTTTTCTCATGTGGACTATGGGCGGTGGGAAAGGAAATTGATCAGGTCCGCATCGACTAACCAGTTTGGACTACATGGCCCAATTGAATTAAAACCAGGAGAGTCTTGGGCCACAAAAAGTTCAATAGGAGTGTCTCATACCGATGCGGACTCTGAATTAGAAAACGCAATACACCCATACAGACAACTAAACAGGCTCGGAACAAGCGTCCTAGACCCGGGAGATTCAGCATCAATTGTAGGAGCACAGAGGGCCCAATCAAACATAACAATGTCAATGACCCAATTAAGCGAGATTGTTAAGGCGACAGTTCAAGAATGTATTAACAGTAATTGTATCCCTTCTCAGCCAAAGTCGTTGAAATAA |
Protein Sequence | MDSQLACPPSAFNYIESHRDEYQLSHDLTEIVLQFPSTASQLTARLSRSCMKIDHCVIEYRQQVPINATGAVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFSNRDVDFSHVDYGRWERKLIRSASTNQFGLHGPIELKPGESWATKSSIGVSHTDADSELENAIHPYRQLNRLGTSVLDPGDSASIVGAQRAQSNITMSMTQLSEIVKATVQECINSNCIPSQPKSLK |
1 |
Macroptilium yellow mosaic virus, a New Begomovirus Infecting Macroptilium lathyroides in Cuba. Ramos PL, et al. Plant Dis. 2002 Sep;86(9):1049. doi: 10.1094/PDIS.2002.86.9.1049B. PMID: 30818538 |
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2 |
Bracero V, et al. Plant Dis. 2003 Sep;87(9):1022-1025. doi: 10.1094/PDIS.2003.87.9.1022. PMID: 30812812 |
3 |
Collins A, et al. Virus Res. 2010 Jun;150(1-2):148-52. doi: 10.1016/j.virusres.2010.03.008. Epub 2010 Mar 25. PMID: 20347895 |
4 |
Idris AM, et al. Plant Dis. 1999 Nov;83(11):1071. doi: 10.1094/PDIS.1999.83.11.1071C. PMID: 30841284 |
5 |
Batista JG, et al. Arch Virol. 2022 Jul;167(7):1597-1602. doi: 10.1007/s00705-022-05410-0. Epub 2022 May 14. PMID: 35562613 |
6 |
Two Newly Described Begomoviruses of Macroptilium lathyroides and Common Bean. Idris AM, et al. Phytopathology. 2003 Jul;93(7):774-83. doi: 10.1094/PHYTO.2003.93.7.774. PMID: 18943157 |
7 |
Passos LS, et al. Arch Virol. 2017 Nov;162(11):3551-3554. doi: 10.1007/s00705-017-3522-y. Epub 2017 Aug 4. PMID: 28779234 |
8 |
Nanopore sequencing of a novel bipartite New World begomovirus infecting cowpea. Naito FYB, et al. Arch Virol. 2019 Jul;164(7):1907-1910. doi: 10.1007/s00705-019-04254-5. Epub 2019 Apr 10. PMID: 30972591 |
9 |
Roye ME, et al. Plant Dis. 1997 Nov;81(11):1251-1258. doi: 10.1094/PDIS.1997.81.11.1251. PMID: 30861729 |
10 |
First Report of Bean common mosaic virus in Cudrania tricuspidata in Korea. Seo JK, et al. Plant Dis. 2015 Feb;99(2):292. doi: 10.1094/PDIS-07-14-0678-PDN. PMID: 30699581 |