Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000879515.1 |
Isolate | Jamaica |
Release date | 2015/2/22 |
Submitter | Collins,A.M., Roye,M.E. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_001974413.1 |
---|---|
Location | 198-953 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGGGATGGGTCGTGGCGCACCACTCCTGGAGTCGCAAAGGTGAGTCGCCGTTTGAATTACTCCCCTCGTGGGGGATATGGGCCGAAGTCCAACAAGGCCCAGGAGTGGGTAAACAGGCCTATGTACCGGAAGCCCAGGATATATCGCACGTTGACTAGTCCCGATGTGCCCAGAGGATGTGAAGGCCCATGCAAGGTTCAGTCGTACGAGCAACGCCACGACATCTCACATGTCGGCAAGGTAATGTGTATCTCCGATGTGACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTCTGTGTGAAGTCTGTGTACATTTTAGGGAAGATATGGATGGACGAGAACATCAAGCTCAAGAACCACACCAACAGTGTCATGTTCTGGTTGGTTAGGGACCGTAGACCCTACGGTACTCCCATGGATTTCGGTCAGGTGTTCAACATGTTCGACAACGAGCCTAGTACAGCAACGGTGAAGAACGATCTCCGTGATCGTTACCAAGTCCTGCACAAGTTTTATGGGAAGGTCACCGGTGGACAGTATGCCAGCAACGAGCAGGCAATCGTGAAGCGGTTCTGGAAGGTGAACAACTACGTGGTGTACAATCACCAGGAGGCTGGCAAGTACGAGAACCATACGGAGAACGCTTTATTATTGTACATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACGCTTAAGATTCGGATCTATTTTTATGATTCGATATTAAATTAA |
Protein Sequence | MPKRDGSWRTTPGVAKVSRRLNYSPRGGYGPKSNKAQEWVNRPMYRKPRIYRTLTSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLHKFYGKVTGGQYASNEQAIVKRFWKVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSILN |
NCBI Accession | YP_001974414.1 |
---|---|
Location | 950-1339 |
Gene Name | AC3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTTACGCACAGGGGAACTCATCACTGCACATCAGGCAGAGAGTGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCGAGATCATTTCGGTTGTGGAATTCAACAGAGCGAAGAAGTACCGGTTCCAGATACGATTCAACCACAACCTCAGGAAGAAGCTGGGTCTTCTCATATGCTGGCTGAACCTGATGATCTGGACACCGTCACACTGGAACAGTTCCAGTTTCTACAGGATATTCTGTTCGAGGATTAGGCGTTATTTAGATAGGCTAGGAGTTATTTGTATTAACAATGTAATTAGGGCTGTGACATATGCCGTCGACACGATGGACATCGAATGTAATGAGCTTCCACATGTAATAAAATTCAAGCTTTATTAA |
Protein Sequence | MDLRTGELITAHQAESGVYIWEIENPLYFEIISVVEFNRAKKYRFQIRFNHNLRKKLGLLICWLNLMIWTPSHWNSSSFYRIFCSRIRRYLDRLGVICINNVIRAVTYAVDTMDIECNELPHVIKFKLY |
NCBI Accession | YP_001974415.1 |
---|---|
Location | 1077-1475 |
Gene Name | AC2 |
Protein Name | transcriptional activator protien |
Coding Region | ATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGCCAGGCCAAGAAGAGAGCGACCAGGAGGAGACGCGTTGATCTAAACTGCGGGTGCTCCATCTACTTCCACATAAGCTGCAGAGGACATGGATTTACGCACAGGGGAACTCATCACTGCACATCAGGCAGAGAGTGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCGAGATCATTTCGGTTGTGGAATTCAACAGAGCGAAGAAGTACCGGTTCCAGATACGATTCAACCACAACCTCAGGAAGAAGCTGGGTCTTCTCATATGCTGGCTGAACCTGATGATCTGGACACCGTCACACTGGAACAGTTCCAGTTTCTACAGGATATTCTGTTCGAGGATTAG |
Protein Sequence | MRSSSPSQPPSIKKAHSQAKKRATRRRRVDLNCGCSIYFHISCRGHGFTHRGTHHCTSGREWRVYLGDRKSPLFRDHFGCGIQQSEEVPVPDTIQPQPQEEAGSSHMLAEPDDLDTVTLEQFQFLQDILFED |
NCBI Accession | YP_001974416.1 |
---|---|
Location | 1387-2472 |
Gene Name | AC1 |
Protein Name | replication initiator protien |
Coding Region | ATGCCACGAAAGGGTTCTTTCTCCATAAAAGCCAAAAACTATTTCCTCACATATCCTCAGTGCTCTCTTACCAAAGAAGAAGCACTTTCCCAATTAACAAACCTAAACACTCCGGTTAACAAGAAATTCATCAAAATCTGCAGAGAGTTCCACGAAGATGGGCAGCCTCATCTCCACGTCCTCATCCAGTTCCAAGGGAAATTCAACTGCACGAATAACAGATTGTTCGATCTGGTGTCCCCAAGTAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAGGACGGGGACACCATCGAATGGGGAGTGTTCCAGATCGACGGAAGAAGTGCTCGAGGCGGTCAGCAAACATCTAACGATGCAGCCGCCGAAGCATTAAATTCTGGAACAAAGGAGGCGGCCATGAGAATAGTCAAGGAGAAGTTGCCGGAGAAGTTTCTCTTTCAGTATCACAACCTATCCAGTAACCTGGATAGGATTTTCATGAAGGATCCGGAACCATGGGCTCCTCCGTTTCCCCTCTCCTCTTTCACTAACGTTCCTGACGAGATGCAAGAGTGGGCTGACGATTATTTTGGGAGAGGTTCCGCTGCGCGGCCAGAGAGACCGATGAGTATCATAGTGGAAGGTGATTCGAGAACAGGGAAGACGATGTGGGCTCGTGCCTCAGGCCCACACAATTACCTAAGTGGACATCTGGACTTCAATCCAAGAGTGTTCTCGAACGAGGTGGATTATAACGTCATTGATGACGTTGCACCGCACTACCTAAAGCTAAAGCACTGGAAAGAACTTGTCGGGGCCCAAAAAGACTGGCAGTCAAATTGCAAATACGGGAAGCCAGTCCAAATTAAAGGTGGAATCCCATCAATCGTGCTGTGCAATCCTGGTGAGGGTGCTAGCTATAAAGACTTCCTGAGCAAAGAGGAAAATGTAGGTCTCAGGAACTGGACACTCAAGAATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGCCAGGCCAAGAAGAGAGCGACCAGGAGGAGACGCGTTGA |
Protein Sequence | MPRKGSFSIKAKNYFLTYPQCSLTKEEALSQLTNLNTPVNKKFIKICREFHEDGQPHLHVLIQFQGKFNCTNNRLFDLVSPSRSTHFHPNIQGAKSSSDVKSYVEKDGDTIEWGVFQIDGRSARGGQQTSNDAAAEALNSGTKEAAMRIVKEKLPEKFLFQYHNLSSNLDRIFMKDPEPWAPPFPLSSFTNVPDEMQEWADDYFGRGSAARPERPMSIIVEGDSRTGKTMWARASGPHNYLSGHLDFNPRVFSNEVDYNVIDDVAPHYLKLKHWKELVGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLSKEENVGLRNWTLKNAIFITLTAPLYQEGTQPGQEESDQEETR |
NCBI Accession | YP_001974417.1 |
---|---|
Location | 392-1162 |
Gene Name | BV1 |
Protein Name | nuclear shuttle protein |
Coding Region | ATGTATCCTTTTAGGAGTAAACGTGGTCATTATTTCACTCCACGACGATATTACACACGGAACACTGTGTCTAATCGTGCAGCTATTGGCAAGAGGCAGGATGGGAAACGTCGTGTGGGTAATTCCTCGAAGCCCAATATTGAGCCCAAGATGAAAGCCCAGTGCATACACGAGAATCAGTATGGCCCAGAATTTGTGATGGCCCATAACTCAGCCATTTCGACTTTCATCAGTTATCCCAGCCTCGGTAAGTCCGAGCCTAACCGAAGCAGGTCCTATATTAAGTTGAAACGACTTCGTTTCAAGGGGACCGTTAAGATTGAACGTGTGCAAGCTGATGTGAACATGGACGGCTCCATCCCAAAAGTTGAAGGAGTCTTCTCCCTCGTTGTGGTCGTGGATCGTAAACCCCACTTGGGTTCAACTGGCTGTCTCCACACATTCGACGAGCTGTTCGATGCTAGGATCCACAGCCACGGTAACCTAAACATAACTCCCTCCCTGAAAGACCGGTTCTACATAAAACACGTGTTCAAACGTGTGCTGTCTGTGGAGAAGGATACGCTGATGGTAGACGTGGAAGGATCCACTTGGCTCTCGAACAGACGTTTCAATTCCTGGGCTATGTTTAAGGATCTAGATCATGACTCGTGCAAGGGTGTTTATGACAACATCAGCAAGAACGCCCTTTTAGTTTATTATTGTTGGATGTCAGACACTATGTCTAAGGCGTCTAGTTATGTATCTTTTGATCTCGATTATATCGGGTGA |
Protein Sequence | MYPFRSKRGHYFTPRRYYTRNTVSNRAAIGKRQDGKRRVGNSSKPNIEPKMKAQCIHENQYGPEFVMAHNSAISTFISYPSLGKSEPNRSRSYIKLKRLRFKGTVKIERVQADVNMDGSIPKVEGVFSLVVVVDRKPHLGSTGCLHTFDELFDARIHSHGNLNITPSLKDRFYIKHVFKRVLSVEKDTLMVDVEGSTWLSNRRFNSWAMFKDLDHDSCKGVYDNISKNALLVYYCWMSDTMSKASSYVSFDLDYIG |
NCBI Accession | YP_001974418.1 |
---|---|
Location | 1223-2104 |
Gene Name | BC1 |
Protein Name | cell to cell movement protein |
Coding Region | ATGGATTCTCAGTTGGTCGTTCCTCCAAATGCCTTTAACTACATAGAGTCACACCGTGACGAGTATCAGCTTTCCCATGACCTTTCTGAGATAGTTCTGCAGTTTCCATCGACGGCGTCCCAGTTGACAGCTAGACTCAGTCGTAGTTGCATGAAGATAGATCACTGCGTCATCGAATACAGGCAGCAAGTACCGATCAACGCCACCGGGAGTGTGATAGTGGAGATCCACGACAAAAGAATGACTGACAACGAATCATTACAGGCGTCATGGACATTTCCGATCAGATGCAACATAGATCTCCACTATTTCTCTGCATCGTTCTTTTCGCTCAAGGACCCAATTCCATGGAAATTGTATTACAGGGTATCGGACACGAATGTTCATCAGAGGACCCACTTCGCGAAATTCAAAGGGAAACTGAAATTGTCGACGGCGAAACACTCCGTGGACATCCCCTTCCGGGCACCAACGGTGAAGATTCTTTCCAGGCAGTTCACCGACAAGGATGTGGACTTTAACCACGTCGACTACGGAAGATGGGAAAGGAAGCCCATCAGATGCGCATCTATGTCAAGACTGGGGATCAGAGGCCCAATCGAAATAAGGCCTGGAGAGTCATGGGCTTCCAGGAGCACGATAGGTACAGGCCAATCAGACGCGGACTCGGACATGGAGAACGAACTCCATCCATACAGGCATCTGAGCCGGCTAGGGACCAGCGTCTTAGACCCGGGAGAGTCTGCTTCGATAGTGGGAGCCCAGAGAGCGGAGTCCAACATCACGATGTCAATGGGCCAATTAAACGAACTTGTTAGGAACACGGTCCAACAATGTATCAATAGTAATTGTAGGGCTTCACAGCCCAAATCGTTGCAATAA |
Protein Sequence | MDSQLVVPPNAFNYIESHRDEYQLSHDLSEIVLQFPSTASQLTARLSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSRQFTDKDVDFNHVDYGRWERKPIRCASMSRLGIRGPIEIRPGESWASRSTIGTGQSDADSDMENELHPYRHLSRLGTSVLDPGESASIVGAQRAESNITMSMGQLNELVRNTVQQCINSNCRASQPKSLQ |
1 |
Macroptilium yellow mosaic virus, a New Begomovirus Infecting Macroptilium lathyroides in Cuba. Ramos PL, et al. Plant Dis. 2002 Sep;86(9):1049. doi: 10.1094/PDIS.2002.86.9.1049B. PMID: 30818538 |
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2 |
Bracero V, et al. Plant Dis. 2003 Sep;87(9):1022-1025. doi: 10.1094/PDIS.2003.87.9.1022. PMID: 30812812 |
3 |
Collins A, et al. Virus Res. 2010 Jun;150(1-2):148-52. doi: 10.1016/j.virusres.2010.03.008. Epub 2010 Mar 25. PMID: 20347895 |
4 |
Idris AM, et al. Plant Dis. 1999 Nov;83(11):1071. doi: 10.1094/PDIS.1999.83.11.1071C. PMID: 30841284 |
5 |
Two Newly Described Begomoviruses of Macroptilium lathyroides and Common Bean. Idris AM, et al. Phytopathology. 2003 Jul;93(7):774-83. doi: 10.1094/PHYTO.2003.93.7.774. PMID: 18943157 |
6 |
Batista JG, et al. Arch Virol. 2022 Jul;167(7):1597-1602. doi: 10.1007/s00705-022-05410-0. Epub 2022 May 14. PMID: 35562613 |
7 |
Passos LS, et al. Arch Virol. 2017 Nov;162(11):3551-3554. doi: 10.1007/s00705-017-3522-y. Epub 2017 Aug 4. PMID: 28779234 |
8 |
Nanopore sequencing of a novel bipartite New World begomovirus infecting cowpea. Naito FYB, et al. Arch Virol. 2019 Jul;164(7):1907-1910. doi: 10.1007/s00705-019-04254-5. Epub 2019 Apr 10. PMID: 30972591 |
9 |
Roye ME, et al. Plant Dis. 1997 Nov;81(11):1251-1258. doi: 10.1094/PDIS.1997.81.11.1251. PMID: 30861729 |
10 |
Idris AM, et al. Plant Dis. 2002 May;86(5):558. doi: 10.1094/PDIS.2002.86.5.558C. PMID: 30818684 |