| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000879515.1 |
| Isolate | Jamaica |
| Release date | 2015/2/22 |
| Submitter | Collins,A.M., Roye,M.E. |
| Host | |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
| NCBI Accession | YP_001974413.1 |
|---|---|
| Location | 198-953 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGCCTAAGCGGGATGGGTCGTGGCGCACCACTCCTGGAGTCGCAAAGGTGAGTCGCCGTTTGAATTACTCCCCTCGTGGGGGATATGGGCCGAAGTCCAACAAGGCCCAGGAGTGGGTAAACAGGCCTATGTACCGGAAGCCCAGGATATATCGCACGTTGACTAGTCCCGATGTGCCCAGAGGATGTGAAGGCCCATGCAAGGTTCAGTCGTACGAGCAACGCCACGACATCTCACATGTCGGCAAGGTAATGTGTATCTCCGATGTGACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTCTGTGTGAAGTCTGTGTACATTTTAGGGAAGATATGGATGGACGAGAACATCAAGCTCAAGAACCACACCAACAGTGTCATGTTCTGGTTGGTTAGGGACCGTAGACCCTACGGTACTCCCATGGATTTCGGTCAGGTGTTCAACATGTTCGACAACGAGCCTAGTACAGCAACGGTGAAGAACGATCTCCGTGATCGTTACCAAGTCCTGCACAAGTTTTATGGGAAGGTCACCGGTGGACAGTATGCCAGCAACGAGCAGGCAATCGTGAAGCGGTTCTGGAAGGTGAACAACTACGTGGTGTACAATCACCAGGAGGCTGGCAAGTACGAGAACCATACGGAGAACGCTTTATTATTGTACATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACGCTTAAGATTCGGATCTATTTTTATGATTCGATATTAAATTAA |
| Protein Sequence | MPKRDGSWRTTPGVAKVSRRLNYSPRGGYGPKSNKAQEWVNRPMYRKPRIYRTLTSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLHKFYGKVTGGQYASNEQAIVKRFWKVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSILN |
| NCBI Accession | YP_001974414.1 |
|---|---|
| Location | 950-1339 |
| Gene Name | AC3 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTTACGCACAGGGGAACTCATCACTGCACATCAGGCAGAGAGTGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCGAGATCATTTCGGTTGTGGAATTCAACAGAGCGAAGAAGTACCGGTTCCAGATACGATTCAACCACAACCTCAGGAAGAAGCTGGGTCTTCTCATATGCTGGCTGAACCTGATGATCTGGACACCGTCACACTGGAACAGTTCCAGTTTCTACAGGATATTCTGTTCGAGGATTAGGCGTTATTTAGATAGGCTAGGAGTTATTTGTATTAACAATGTAATTAGGGCTGTGACATATGCCGTCGACACGATGGACATCGAATGTAATGAGCTTCCACATGTAATAAAATTCAAGCTTTATTAA |
| Protein Sequence | MDLRTGELITAHQAESGVYIWEIENPLYFEIISVVEFNRAKKYRFQIRFNHNLRKKLGLLICWLNLMIWTPSHWNSSSFYRIFCSRIRRYLDRLGVICINNVIRAVTYAVDTMDIECNELPHVIKFKLY |
| NCBI Accession | YP_001974415.1 |
|---|---|
| Location | 1077-1475 |
| Gene Name | AC2 |
| Protein Name | transcriptional activator protien |
| Coding Region | ATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGCCAGGCCAAGAAGAGAGCGACCAGGAGGAGACGCGTTGATCTAAACTGCGGGTGCTCCATCTACTTCCACATAAGCTGCAGAGGACATGGATTTACGCACAGGGGAACTCATCACTGCACATCAGGCAGAGAGTGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCGAGATCATTTCGGTTGTGGAATTCAACAGAGCGAAGAAGTACCGGTTCCAGATACGATTCAACCACAACCTCAGGAAGAAGCTGGGTCTTCTCATATGCTGGCTGAACCTGATGATCTGGACACCGTCACACTGGAACAGTTCCAGTTTCTACAGGATATTCTGTTCGAGGATTAG |
| Protein Sequence | MRSSSPSQPPSIKKAHSQAKKRATRRRRVDLNCGCSIYFHISCRGHGFTHRGTHHCTSGREWRVYLGDRKSPLFRDHFGCGIQQSEEVPVPDTIQPQPQEEAGSSHMLAEPDDLDTVTLEQFQFLQDILFED |
| NCBI Accession | YP_001974416.1 |
|---|---|
| Location | 1387-2472 |
| Gene Name | AC1 |
| Protein Name | replication initiator protien |
| Coding Region | ATGCCACGAAAGGGTTCTTTCTCCATAAAAGCCAAAAACTATTTCCTCACATATCCTCAGTGCTCTCTTACCAAAGAAGAAGCACTTTCCCAATTAACAAACCTAAACACTCCGGTTAACAAGAAATTCATCAAAATCTGCAGAGAGTTCCACGAAGATGGGCAGCCTCATCTCCACGTCCTCATCCAGTTCCAAGGGAAATTCAACTGCACGAATAACAGATTGTTCGATCTGGTGTCCCCAAGTAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAGGACGGGGACACCATCGAATGGGGAGTGTTCCAGATCGACGGAAGAAGTGCTCGAGGCGGTCAGCAAACATCTAACGATGCAGCCGCCGAAGCATTAAATTCTGGAACAAAGGAGGCGGCCATGAGAATAGTCAAGGAGAAGTTGCCGGAGAAGTTTCTCTTTCAGTATCACAACCTATCCAGTAACCTGGATAGGATTTTCATGAAGGATCCGGAACCATGGGCTCCTCCGTTTCCCCTCTCCTCTTTCACTAACGTTCCTGACGAGATGCAAGAGTGGGCTGACGATTATTTTGGGAGAGGTTCCGCTGCGCGGCCAGAGAGACCGATGAGTATCATAGTGGAAGGTGATTCGAGAACAGGGAAGACGATGTGGGCTCGTGCCTCAGGCCCACACAATTACCTAAGTGGACATCTGGACTTCAATCCAAGAGTGTTCTCGAACGAGGTGGATTATAACGTCATTGATGACGTTGCACCGCACTACCTAAAGCTAAAGCACTGGAAAGAACTTGTCGGGGCCCAAAAAGACTGGCAGTCAAATTGCAAATACGGGAAGCCAGTCCAAATTAAAGGTGGAATCCCATCAATCGTGCTGTGCAATCCTGGTGAGGGTGCTAGCTATAAAGACTTCCTGAGCAAAGAGGAAAATGTAGGTCTCAGGAACTGGACACTCAAGAATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGCCAGGCCAAGAAGAGAGCGACCAGGAGGAGACGCGTTGA |
| Protein Sequence | MPRKGSFSIKAKNYFLTYPQCSLTKEEALSQLTNLNTPVNKKFIKICREFHEDGQPHLHVLIQFQGKFNCTNNRLFDLVSPSRSTHFHPNIQGAKSSSDVKSYVEKDGDTIEWGVFQIDGRSARGGQQTSNDAAAEALNSGTKEAAMRIVKEKLPEKFLFQYHNLSSNLDRIFMKDPEPWAPPFPLSSFTNVPDEMQEWADDYFGRGSAARPERPMSIIVEGDSRTGKTMWARASGPHNYLSGHLDFNPRVFSNEVDYNVIDDVAPHYLKLKHWKELVGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLSKEENVGLRNWTLKNAIFITLTAPLYQEGTQPGQEESDQEETR |
| NCBI Accession | YP_001974417.1 |
|---|---|
| Location | 392-1162 |
| Gene Name | BV1 |
| Protein Name | nuclear shuttle protein |
| Coding Region | ATGTATCCTTTTAGGAGTAAACGTGGTCATTATTTCACTCCACGACGATATTACACACGGAACACTGTGTCTAATCGTGCAGCTATTGGCAAGAGGCAGGATGGGAAACGTCGTGTGGGTAATTCCTCGAAGCCCAATATTGAGCCCAAGATGAAAGCCCAGTGCATACACGAGAATCAGTATGGCCCAGAATTTGTGATGGCCCATAACTCAGCCATTTCGACTTTCATCAGTTATCCCAGCCTCGGTAAGTCCGAGCCTAACCGAAGCAGGTCCTATATTAAGTTGAAACGACTTCGTTTCAAGGGGACCGTTAAGATTGAACGTGTGCAAGCTGATGTGAACATGGACGGCTCCATCCCAAAAGTTGAAGGAGTCTTCTCCCTCGTTGTGGTCGTGGATCGTAAACCCCACTTGGGTTCAACTGGCTGTCTCCACACATTCGACGAGCTGTTCGATGCTAGGATCCACAGCCACGGTAACCTAAACATAACTCCCTCCCTGAAAGACCGGTTCTACATAAAACACGTGTTCAAACGTGTGCTGTCTGTGGAGAAGGATACGCTGATGGTAGACGTGGAAGGATCCACTTGGCTCTCGAACAGACGTTTCAATTCCTGGGCTATGTTTAAGGATCTAGATCATGACTCGTGCAAGGGTGTTTATGACAACATCAGCAAGAACGCCCTTTTAGTTTATTATTGTTGGATGTCAGACACTATGTCTAAGGCGTCTAGTTATGTATCTTTTGATCTCGATTATATCGGGTGA |
| Protein Sequence | MYPFRSKRGHYFTPRRYYTRNTVSNRAAIGKRQDGKRRVGNSSKPNIEPKMKAQCIHENQYGPEFVMAHNSAISTFISYPSLGKSEPNRSRSYIKLKRLRFKGTVKIERVQADVNMDGSIPKVEGVFSLVVVVDRKPHLGSTGCLHTFDELFDARIHSHGNLNITPSLKDRFYIKHVFKRVLSVEKDTLMVDVEGSTWLSNRRFNSWAMFKDLDHDSCKGVYDNISKNALLVYYCWMSDTMSKASSYVSFDLDYIG |
| NCBI Accession | YP_001974418.1 |
|---|---|
| Location | 1223-2104 |
| Gene Name | BC1 |
| Protein Name | cell to cell movement protein |
| Coding Region | ATGGATTCTCAGTTGGTCGTTCCTCCAAATGCCTTTAACTACATAGAGTCACACCGTGACGAGTATCAGCTTTCCCATGACCTTTCTGAGATAGTTCTGCAGTTTCCATCGACGGCGTCCCAGTTGACAGCTAGACTCAGTCGTAGTTGCATGAAGATAGATCACTGCGTCATCGAATACAGGCAGCAAGTACCGATCAACGCCACCGGGAGTGTGATAGTGGAGATCCACGACAAAAGAATGACTGACAACGAATCATTACAGGCGTCATGGACATTTCCGATCAGATGCAACATAGATCTCCACTATTTCTCTGCATCGTTCTTTTCGCTCAAGGACCCAATTCCATGGAAATTGTATTACAGGGTATCGGACACGAATGTTCATCAGAGGACCCACTTCGCGAAATTCAAAGGGAAACTGAAATTGTCGACGGCGAAACACTCCGTGGACATCCCCTTCCGGGCACCAACGGTGAAGATTCTTTCCAGGCAGTTCACCGACAAGGATGTGGACTTTAACCACGTCGACTACGGAAGATGGGAAAGGAAGCCCATCAGATGCGCATCTATGTCAAGACTGGGGATCAGAGGCCCAATCGAAATAAGGCCTGGAGAGTCATGGGCTTCCAGGAGCACGATAGGTACAGGCCAATCAGACGCGGACTCGGACATGGAGAACGAACTCCATCCATACAGGCATCTGAGCCGGCTAGGGACCAGCGTCTTAGACCCGGGAGAGTCTGCTTCGATAGTGGGAGCCCAGAGAGCGGAGTCCAACATCACGATGTCAATGGGCCAATTAAACGAACTTGTTAGGAACACGGTCCAACAATGTATCAATAGTAATTGTAGGGCTTCACAGCCCAAATCGTTGCAATAA |
| Protein Sequence | MDSQLVVPPNAFNYIESHRDEYQLSHDLSEIVLQFPSTASQLTARLSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSRQFTDKDVDFNHVDYGRWERKPIRCASMSRLGIRGPIEIRPGESWASRSTIGTGQSDADSDMENELHPYRHLSRLGTSVLDPGESASIVGAQRAESNITMSMGQLNELVRNTVQQCINSNCRASQPKSLQ |
| 1 |
Macroptilium yellow mosaic virus, a New Begomovirus Infecting Macroptilium lathyroides in Cuba. Ramos PL, et al. Plant Dis. 2002 Sep;86(9):1049. doi: 10.1094/PDIS.2002.86.9.1049B. PMID: 30818538 |
|---|---|
| 2 |
Idris AM, et al. Plant Dis. 1999 Nov;83(11):1071. doi: 10.1094/PDIS.1999.83.11.1071C. PMID: 30841284 |
| 3 |
Collins A, et al. Virus Res. 2010 Jun;150(1-2):148-52. doi: 10.1016/j.virusres.2010.03.008. Epub 2010 Mar 25. PMID: 20347895 |
| 4 |
Bracero V, et al. Plant Dis. 2003 Sep;87(9):1022-1025. doi: 10.1094/PDIS.2003.87.9.1022. PMID: 30812812 |
| 5 |
Idris AM, et al. Plant Dis. 2002 May;86(5):558. doi: 10.1094/PDIS.2002.86.5.558C. PMID: 30818684 |
| 6 |
Two Newly Described Begomoviruses of Macroptilium lathyroides and Common Bean. Idris AM, et al. Phytopathology. 2003 Jul;93(7):774-83. doi: 10.1094/PHYTO.2003.93.7.774. PMID: 18943157 |
| 7 |
Batista JG, et al. Arch Virol. 2022 Jul;167(7):1597-1602. doi: 10.1007/s00705-022-05410-0. Epub 2022 May 14. PMID: 35562613 |
| 8 |
Contrasting genetic structure between two begomoviruses infecting the same leguminous hosts. Sobrinho RR, et al. J Gen Virol. 2014 Nov;95(Pt 11):2540-2552. doi: 10.1099/vir.0.067009-0. Epub 2014 Jul 15. PMID: 25028472 |
| 9 |
Nanopore sequencing of a novel bipartite New World begomovirus infecting cowpea. Naito FYB, et al. Arch Virol. 2019 Jul;164(7):1907-1910. doi: 10.1007/s00705-019-04254-5. Epub 2019 Apr 10. PMID: 30972591 |
| 10 |
Roye ME, et al. Plant Dis. 1997 Nov;81(11):1251-1258. doi: 10.1094/PDIS.1997.81.11.1251. PMID: 30861729 |