Ludwigia yellow vein virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000865765.1
Isolate China:Guangxi
Release date 2015/2/13
Submitter Huang,J., Jiang,T., Zhou,X.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_007210
ACCGGATGGCCGCGCAAATTTTTGTCCTCTTTTACTTTAGTGGACCCCACGCACTATCTTTGGTCGGCCAATGAGAATGCGCGCTCAAAGCTTAGATATCCTTGTGGTCCCGCCATAAATAACTTCCCCTCGAAGGTAAATTCAAAATGTGGGATCCGTTGGAACACGAGTTTCCGGAAACTCTTCACGGTTTCCGTTGTATGCTCGCTATCAAATACCTGCAGACTGTAGCGGATACGTATGCTCCGGATACGGTAGGTTACGATCTTATTCGTGATTTAATTTCTATTGTACGAGCTGGCAACTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACACCCGTCTCCAAAGTACGTCGCCGGTTGAACTTCGATTCCCCCGGAATGAACCGTGCTGCTGCCCGCACTGTCCTCGGCATAACCCGAAAGAATGCCTGGACGTACAGGCCCACGTATCGCAAGCCCAGACTGTACAGAATGTACAGAAGCCCTGATGTCCCGCGTGGTTGTGAGGGTCCATGTAAGGTTCAGTCTTTCGAGAAAAAGCACGATGTTGGTCATACGGGTACATTATTATGTGTGTCGGATGTTACTCGTGGAAATGGGTTGACTCATCGCACTGGGAAGAGGTTCTGTATTAAGTCTATTTACATTCTGGGTAAGTTATGGATGGATGAGAACATCAAGACGAAGAATCACACGAACACAGTCATGTTCTGGTTAGTTAGGGATAGGCGTCCTGTGACAACGCCCTATGGGTTCGGCGAGGCATTCAACATGTACGACAATGAGCCCAGTACAGCCACTATCAAGAACGATCTTCGTGATCGTCTGCAGGTGCTGCATAGGTTTCAAGCCACGCTCACTGGAGGGCAGTACGCGTGCAAGGAACAGGTCATGGTGAAGAAGTTCTGGAAGATCAACAATCACGTCGTCTACAACCATCAGGAGAAGGCTGCTTACGAGAATCACACTGAGAACGCATTAATATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACACTGAAGATCCGCATCTACTTCTATGATTCAGTCCAGAATTAATAAAGATTATATTTTATTATATGTGTCAATTGAGCATCAATTGTGCCCTCCAGTACATCATACAGTACATGATTTATAGCCCTAATTACATTGTTGACACTAATAATGCCTAATTTATCTAAGTACTGCATACATTGAACTTTAAATACTCTTGAGAAACGCCCAGTCTGAGGACGTAAACGAGTCCAGATCTGGCAGATCAGGAAACACTGGTGCATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAACTGGACCTGGATTGTTATTACGTCGTGGTCCCTCAGGAATGGCCTCTCCAGGTGCTTGGTAATCTTGAAATAGAGGGGATTTCTGACCGTCCAGGTATAGACGCCACTCTCTGCCTGAGTTGCAGTGATGTACTCCCCGGTGCGAAAATCCATGGTTGGCACAGGTTATTGGAAAGAAGTAAGAGCAGCCGCAGGGTAGATCAACTCTCCTCCTGCGGATTGTCCTCTTCTTGGCTATTCTGTGCTGTACTTTGATGGGTACCTGAGTACAGTGGCTCTGAGAGGAAGACGAATTCTGCATTCTTCAGTGCCCAGGACTTCAAAGCTGAATTCTTATCCTCGTCGAGATATTCCTTATATGATGATGTCGGTCCCAGGATTGCATAGGAAGATTGTCGGAATGCCCCCTTTAATTTGAATGGGCTTGCCGTACTTGGTGTTGCTTTGCCAATCCCGTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGGGGGTCAACATCATCGATGACGTTATACCATGCGTCATTTGAGTAGATCTTGGGGCTCAAGTCTAGATGCCCACAAAGGTAATTATGTGGGCCTAGTGATCTGGCCCACATTGTCTTCCCAGTTCTACTCTCTCCCTCTACTACTATACTGACCGGTCGCCAAGGCCGCGCAGCGGCATCCCTGACATTCTCCTCCGCCCAACATTCAAGTTCTTCCGGAACTTGATCGAATGAAGAAGCTAAAAAAGGAGAAACAAAAACCTCTGCAGGAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAACTGAAATATATATTCTTTAGGTAATTTTTCTCTAATAATAGATAAAGCAGCTTCCTTTGAACCTGCATTCAGCGCTTCTGCTGCTGCATCATTAGCCGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAAACACCCCAGTCGACGTAATCACCGTCCTTCTCGATATAGGACTTGACATCAGAACTGGACTTGGCTCCTTGGAAGTTCGGATGGAATTGTGAGGAGGTGTTGGGATGCGTAATGTCAAAATGCCTGGGGTTCCTGAATTGGGCTTTACCTTTGAATTGGATGAGGGCATGGAGATGCAGTGTCCCATCGGAGTGTTTCTCTTGAGCTACTCTGATGAATAATTTATCGGATGGGCAGTGAATAGCCTTTATAAGCTCTAGTGCCTCTTCTTTGGGAATAGGGCATTTGGGATAAGTGAGAAATATGTTTTTGGCTTTTATTTGGAATGAACGAGGACGAGGCATGTTGAGAACTGAATCGGGGGCTCTCAAAACTCTACGGAATGGGGTGCTCGGGGTGCCTATATATGTTGAGCCCCCTAATGGCAGATTTGTAATTTTCAAAGAAAATTTCAAATTCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_271818.1
Location 147-497
Gene Name av2
Protein Name AV2 protein
Coding Region ATGTGGGATCCGTTGGAACACGAGTTTCCGGAAACTCTTCACGGTTTCCGTTGTATGCTCGCTATCAAATACCTGCAGACTGTAGCGGATACGTATGCTCCGGATACGGTAGGTTACGATCTTATTCGTGATTTAATTTCTATTGTACGAGCTGGCAACTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACACCCGTCTCCAAAGTACGTCGCCGGTTGAACTTCGATTCCCCCGGAATGAACCGTGCTGCTGCCCGCACTGTCCTCGGCATAACCCGAAAGAATGCCTGGACGTACAGGCCCACGTATCGCAAGCCCAGACTGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLEHEFPETLHGFRCMLAIKYLQTVADTYAPDTVGYDLIRDLISIVRAGNYVEATRRYSHFNTRLQSTSPVELRFPRNEPCCCPHCPRHNPKECLDVQAHVSQAQTVQNVQKP

NCBI Accession YP_271819.1
Location 307-1080
Gene Name cp
Protein Name CP protein
Coding Region ATGTCGAAGCGACCCGCCGATATAGTCATTTCAACACCCGTCTCCAAAGTACGTCGCCGGTTGAACTTCGATTCCCCCGGAATGAACCGTGCTGCTGCCCGCACTGTCCTCGGCATAACCCGAAAGAATGCCTGGACGTACAGGCCCACGTATCGCAAGCCCAGACTGTACAGAATGTACAGAAGCCCTGATGTCCCGCGTGGTTGTGAGGGTCCATGTAAGGTTCAGTCTTTCGAGAAAAAGCACGATGTTGGTCATACGGGTACATTATTATGTGTGTCGGATGTTACTCGTGGAAATGGGTTGACTCATCGCACTGGGAAGAGGTTCTGTATTAAGTCTATTTACATTCTGGGTAAGTTATGGATGGATGAGAACATCAAGACGAAGAATCACACGAACACAGTCATGTTCTGGTTAGTTAGGGATAGGCGTCCTGTGACAACGCCCTATGGGTTCGGCGAGGCATTCAACATGTACGACAATGAGCCCAGTACAGCCACTATCAAGAACGATCTTCGTGATCGTCTGCAGGTGCTGCATAGGTTTCAAGCCACGCTCACTGGAGGGCAGTACGCGTGCAAGGAACAGGTCATGGTGAAGAAGTTCTGGAAGATCAACAATCACGTCGTCTACAACCATCAGGAGAAGGCTGCTTACGAGAATCACACTGAGAACGCATTAATATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACACTGAAGATCCGCATCTACTTCTATGATTCAGTCCAGAATTAA
Protein Sequence MSKRPADIVISTPVSKVRRRLNFDSPGMNRAAARTVLGITRKNAWTYRPTYRKPRLYRMYRSPDVPRGCEGPCKVQSFEKKHDVGHTGTLLCVSDVTRGNGLTHRTGKRFCIKSIYILGKLWMDENIKTKNHTNTVMFWLVRDRRPVTTPYGFGEAFNMYDNEPSTATIKNDLRDRLQVLHRFQATLTGGQYACKEQVMVKKFWKINNHVVYNHQEKAAYENHTENALILYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession YP_271820.1
Location 1077-1481
Gene Name ac3
Protein Name AC3 protein
Coding Region ATGGATTTTCGCACCGGGGAGTACATCACTGCAACTCAGGCAGAGAGTGGCGTCTATACCTGGACGGTCAGAAATCCCCTCTATTTCAAGATTACCAAGCACCTGGAGAGGCCATTCCTGAGGGACCACGACGTAATAACAATCCAGGTCCAGTTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAGTGTTTCCTGATCTGCCAGATCTGGACTCGTTTACGTCCTCAGACTGGGCGTTTCTCAAGAGTATTTAAAGTTCAATGTATGCAGTACTTAGATAAATTAGGCATTATTAGTGTCAACAATGTAATTAGGGCTATAAATCATGTACTGTATGATGTACTGGAGGGCACAATTGATGCTCAATTGACACATATAATAAAATATAATCTTTATTAA
Protein Sequence MDFRTGEYITATQAESGVYTWTVRNPLYFKITKHLERPFLRDHDVITIQVQFNYNLRKALGMHQCFLICQIWTRLRPQTGRFSRVFKVQCMQYLDKLGIISVNNVIRAINHVLYDVLEGTIDAQLTHIIKYNLY

NCBI Accession YP_271821.1
Location 1222-1629
Gene Name ac2
Protein Name AC2 protein
Coding Region ATGCAGAATTCGTCTTCCTCTCAGAGCCACTGTACTCAGGTACCCATCAAAGTACAGCACAGAATAGCCAAGAAGAGGACAATCCGCAGGAGGAGAGTTGATCTACCCTGCGGCTGCTCTTACTTCTTTCCAATAACCTGTGCCAACCATGGATTTTCGCACCGGGGAGTACATCACTGCAACTCAGGCAGAGAGTGGCGTCTATACCTGGACGGTCAGAAATCCCCTCTATTTCAAGATTACCAAGCACCTGGAGAGGCCATTCCTGAGGGACCACGACGTAATAACAATCCAGGTCCAGTTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAGTGTTTCCTGATCTGCCAGATCTGGACTCGTTTACGTCCTCAGACTGGGCGTTTCTCAAGAGTATTTAA
Protein Sequence MQNSSSSQSHCTQVPIKVQHRIAKKRTIRRRRVDLPCGCSYFFPITCANHGFSHRGVHHCNSGREWRLYLDGQKSPLFQDYQAPGEAIPEGPRRNNNPGPVQLQPEESTGDAPVFPDLPDLDSFTSSDWAFLKSI

NCBI Accession YP_271822.1
Location 1683-2618
Gene Name ac1
Protein Name AC1 protein
Coding Region ATGCCTCGTCCTCGTTCATTCCAAATAAAAGCCAAAAACATATTTCTCACTTATCCCAAATGCCCTATTCCCAAAGAAGAGGCACTAGAGCTTATAAAGGCTATTCACTGCCCATCCGATAAATTATTCATCAGAGTAGCTCAAGAGAAACACTCCGATGGGACACTGCATCTCCATGCCCTCATCCAATTCAAAGGTAAAGCCCAATTCAGGAACCCCAGGCATTTTGACATTACGCATCCCAACACCTCCTCACAATTCCATCCGAACTTCCAAGGAGCCAAGTCCAGTTCTGATGTCAAGTCCTATATCGAGAAGGACGGTGATTACGTCGACTGGGGTGTTTTTCAAGTCGACGGAAGATCTGCTAGAGGAGGTCAGCAGACGGCTAATGATGCAGCAGCAGAAGCGCTGAATGCAGGTTCAAAGGAAGCTGCTTTATCTATTATTAGAGAAAAATTACCTAAAGAATATATATTTCAGTTTCACAATTTAAATTCTAATTTAGATAGGATTTTTGCACCTCCTGCAGAGGTTTTTGTTTCTCCTTTTTTAGCTTCTTCATTCGATCAAGTTCCGGAAGAACTTGAATGTTGGGCGGAGGAGAATGTCAGGGATGCCGCTGCGCGGCCTTGGCGACCGGTCAGTATAGTAGTAGAGGGAGAGAGTAGAACTGGGAAGACAATGTGGGCCAGATCACTAGGCCCACATAATTACCTTTGTGGGCATCTAGACTTGAGCCCCAAGATCTACTCAAATGACGCATGGTATAACGTCATCGATGATGTTGACCCCCACTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAACGGGATTGGCAAAGCAACACCAAGTACGGCAAGCCCATTCAAATTAAAGGGGGCATTCCGACAATCTTCCTATGCAATCCTGGGACCGACATCATCATATAA
Protein Sequence MPRPRSFQIKAKNIFLTYPKCPIPKEEALELIKAIHCPSDKLFIRVAQEKHSDGTLHLHALIQFKGKAQFRNPRHFDITHPNTSSQFHPNFQGAKSSSDVKSYIEKDGDYVDWGVFQVDGRSARGGQQTANDAAAEALNAGSKEAALSIIREKLPKEYIFQFHNLNSNLDRIFAPPAEVFVSPFLASSFDQVPEELECWAEENVRDAAARPWRPVSIVVEGESRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGTDIII

NCBI Accession YP_271823.1
Location 2204-2461
Gene Name ac4
Protein Name AC4 protein
Coding Region ATGGGACACTGCATCTCCATGCCCTCATCCAATTCAAAGGTAAAGCCCAATTCAGGAACCCCAGGCATTTTGACATTACGCATCCCAACACCTCCTCACAATTCCATCCGAACTTCCAAGGAGCCAAGTCCAGTTCTGATGTCAAGTCCTATATCGAGAAGGACGGTGATTACGTCGACTGGGGTGTTTTTCAAGTCGACGGAAGATCTGCTAGAGGAGGTCAGCAGACGGCTAATGATGCAGCAGCAGAAGCGCTGA
Protein Sequence MGHCISMPSSNSKVKPNSGTPGILTLRIPTPPHNSIRTSKEPSPVLMSSPISRRTVITSTGVFFKSTEDLLEEVSRRLMMQQQKR

References More References in PubMed

1

Association of a distinct strain of hollyhock yellow vein mosaic virus and Ludwigia leaf distortion betasatellite with yellow vein mosaic disease of hollyhock (Alcea rosea) in India.

Srivastava A, et al.  Arch Virol. 2014 Oct;159(10):2711-5. doi: 10.1007/s00705-014-2108-1. Epub 2014 May 9.

PMID: 24810100
2

Distribution, epidemiology and molecular variability of the begomovirus complexes associated with yellow vein mosaic disease of mesta in India.

Roy A, et al.  Virus Res. 2009 May;141(2):237-46. doi: 10.1016/j.virusres.2008.11.022. Epub 2009 Jan 31.

PMID: 19428737
3

Sequence variability and phylogenetic relationship of betasatellite isolates associated with yellow vein mosaic disease of mesta in India.

Das S, et al.  Virus Genes. 2008 Dec;37(3):414-24. doi: 10.1007/s11262-008-0287-0. Epub 2008 Sep 20.

PMID: 18807163
4

Molecular characterization of a distinct monopartite begomovirus associated with betasatellites and alphasatellites infecting Pisum sativum in Nepal.

Shahid MS, et al.  Virus Genes. 2017 Apr;53(2):300-306. doi: 10.1007/s11262-016-1424-9. Epub 2016 Dec 23.

PMID: 28012011